Wall clock time and date at job start Tue Mar 31 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 110.91731 * 2 1 4 4 C 1.54910 * 111.00621 * 236.09215 * 2 1 3 5 5 N 1.47424 * 104.83696 * 278.93571 * 4 2 1 6 6 C 1.36928 * 125.64769 * 155.91350 * 5 4 2 7 7 H 1.08002 * 120.00555 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99591 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00229 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46938 * 60.00478 * 10 8 6 12 12 H 1.48497 * 109.46831 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47251 * 300.00037 * 10 8 6 14 14 C 1.47024 * 108.70048 * 335.87338 * 5 4 2 15 15 C 1.54325 * 107.27277 * 1.05312 * 14 5 4 16 16 H 1.09002 * 110.86998 * 140.62739 * 15 14 5 17 17 N 1.46496 * 110.72309 * 263.83521 * 15 14 5 18 18 C 1.34776 * 119.99846 * 268.51934 * 17 15 14 19 19 O 1.21282 * 119.99940 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00035 * 179.97438 * 18 17 15 21 21 C 1.50706 * 109.47294 * 180.02562 * 20 18 17 22 22 N 1.33240 * 125.52803 * 269.69583 * 21 20 18 23 23 C 1.30826 * 109.82707 * 179.85181 * 22 21 20 24 24 N 1.34424 * 108.08028 * 0.40435 * 23 22 21 25 25 H 0.97002 * 126.83204 * 179.71407 * 24 23 22 26 26 N 1.30714 * 125.52159 * 89.99986 * 21 20 18 27 27 H 1.08996 * 109.46912 * 296.09906 * 1 2 3 28 28 H 1.08999 * 109.46985 * 56.10528 * 1 2 3 29 29 H 1.09007 * 109.46632 * 176.10254 * 1 2 3 30 30 H 1.09000 * 109.47471 * 183.90357 * 3 2 1 31 31 H 1.09008 * 109.47026 * 303.89829 * 3 2 1 32 32 H 1.08994 * 109.47406 * 63.89614 * 3 2 1 33 33 H 1.09004 * 110.36267 * 37.77809 * 4 2 1 34 34 H 1.09004 * 110.36886 * 159.98203 * 4 2 1 35 35 H 0.96997 * 119.99472 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.87896 * 241.64264 * 14 5 4 37 37 H 1.08995 * 109.88237 * 120.47607 * 14 5 4 38 38 H 0.97002 * 120.00387 * 88.52480 * 17 15 14 39 39 H 1.09001 * 109.46665 * 60.00498 * 20 18 17 40 40 H 1.09000 * 109.47722 * 300.00830 * 20 18 17 41 41 H 1.07997 * 125.96318 * 180.19545 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 2.0140 -2.2160 -0.7732 6 6 1.9463 -3.3000 -1.6070 7 1 1.9426 -3.1585 -2.6777 8 6 1.8825 -4.5811 -1.0761 9 7 1.8866 -4.7536 0.2288 10 14 1.7895 -6.0600 -2.2136 11 1 2.9925 -6.0918 -3.0835 12 1 1.7301 -7.3037 -1.4044 13 1 0.5713 -5.9601 -3.0568 14 6 2.0285 -2.2646 0.6962 15 6 2.0862 -0.8079 1.2023 16 1 1.4541 -0.6766 2.0806 17 7 3.4667 -0.4155 1.4962 18 6 3.9655 -0.5839 2.7369 19 8 3.2715 -1.0606 3.6099 20 6 5.3857 -0.1808 3.0392 21 6 5.6935 -0.4713 4.4856 22 7 5.5172 0.3746 5.4998 23 6 5.8805 -0.1942 6.6204 24 7 6.3125 -1.4353 6.3374 25 1 6.6484 -2.0919 6.9674 26 7 6.1818 -1.5922 4.9478 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5731 -0.8530 29 1 -0.3633 -1.0254 -0.0699 30 1 3.1636 1.4025 -0.0700 31 1 1.6705 1.9732 -0.8531 32 1 1.7836 1.9300 0.9228 33 1 1.4672 -0.6462 -2.0836 34 1 3.1176 -0.5220 -1.4037 35 1 1.8416 -5.6487 0.5997 36 1 2.9064 -2.8116 1.0402 37 1 1.1219 -2.7479 1.0600 38 1 4.0218 -0.0345 0.7979 39 1 5.5093 0.8852 2.8481 40 1 6.0670 -0.7453 2.4026 41 1 5.8434 0.2560 7.6014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977483479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:10 Heat of formation + Delta-G solvation = 77.216823 kcal Electronic energy + Delta-G solvation = -24039.406165 eV Core-core repulsion = 20571.039507 eV Total energy + Delta-G solvation = -3468.366659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11372 -39.66033 -37.85015 -33.80982 -33.28107 -32.91747 -31.68044 -30.65429 -29.33841 -27.70518 -26.61178 -25.57668 -23.46982 -22.83012 -21.28967 -20.12091 -19.71571 -18.68024 -18.30514 -16.90848 -16.60209 -15.77614 -15.49429 -15.19610 -14.71520 -14.24032 -13.93549 -13.88235 -13.64645 -13.28473 -13.10086 -12.48387 -12.26595 -12.11687 -11.92123 -11.80624 -11.61547 -11.31212 -11.01461 -10.93739 -10.72890 -10.35439 -10.21313 -10.19619 -10.07556 -9.96267 -9.83730 -9.81315 -9.59000 -9.33526 -8.58453 -8.36877 -6.78012 -5.64374 -2.99320 1.59345 2.61176 2.80017 3.06883 3.43654 3.47713 3.49836 3.68313 4.08946 4.54109 4.60538 4.85208 4.99678 5.18888 5.33730 5.36887 5.39977 5.51512 5.58232 5.69557 5.87172 5.98193 6.08682 6.16262 6.21732 6.25976 6.29989 6.35261 6.45225 6.63637 6.66437 6.72876 6.80857 6.96925 7.01713 7.60418 7.70218 7.87573 7.99866 8.04308 8.30898 8.68236 9.26739 9.87658 10.53310 11.46103 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.004543 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.723411 B = 6161.719310 C = 7484.371091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.175 3.825 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.708 5.708 18 C 0.521 3.479 19 O -0.533 6.533 20 C -0.051 4.051 21 C 0.253 3.747 22 N -0.535 5.535 23 C 0.258 3.742 24 N -0.485 5.485 25 H 0.440 0.560 26 N -0.299 5.299 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.016 0.984 35 H 0.253 0.747 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.396 0.604 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 13.262 8.656 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.050 3.950 15 C 0.021 3.979 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.305 3.695 19 O -0.410 6.410 20 C -0.093 4.093 21 C -0.030 4.030 22 N -0.264 5.264 23 C -0.041 4.041 24 N -0.203 5.203 25 H 0.286 0.714 26 N -0.128 5.128 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.231 0.769 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.995 12.409 8.795 16.741 hybrid contribution 0.471 -1.129 -0.149 1.232 sum 7.466 11.281 8.645 16.054 Atomic orbital electron populations 1.21596 0.93381 1.02884 1.00473 1.22022 0.96309 0.94201 0.96641 1.21667 1.00288 0.95516 1.01306 1.21627 0.96540 0.85753 0.94317 1.44429 1.86923 0.99709 1.01838 1.18976 1.44032 0.84026 0.88872 0.90543 1.24807 1.02226 0.97355 0.95906 1.69962 1.56548 1.20894 1.09170 0.86231 0.77836 0.82399 0.79459 1.21247 1.21680 1.21214 1.21517 1.01571 0.88628 0.83304 1.22468 0.81051 0.97405 0.97022 0.89370 1.45897 1.14933 1.64319 1.10783 1.19987 0.88102 0.78679 0.82758 1.90723 1.60424 1.43698 1.46121 1.19923 0.96365 1.04842 0.88215 1.23321 0.96156 0.87404 0.96154 1.70332 1.24760 1.33735 0.97524 1.26011 0.94479 0.83734 0.99896 1.48084 1.50658 1.14380 1.07197 0.71432 1.78061 1.24764 1.21921 0.88063 0.93365 0.92926 0.91257 0.92965 0.92755 0.92835 0.94184 0.96681 0.93671 0.93400 0.92959 0.76903 0.86315 0.86535 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.57 37.16 0.32 -1.72 16 2 C -0.09 -1.50 0.83 -152.36 -0.13 -1.63 16 3 C -0.13 -1.67 8.22 37.16 0.31 -1.37 16 4 C 0.14 2.84 6.12 -2.53 -0.02 2.83 16 5 N -0.60 -15.12 3.38 -170.07 -0.57 -15.70 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.83 10.31 55.49 0.57 -27.26 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.18 4.37 4.79 -3.06 -0.01 4.36 16 15 C 0.13 2.43 2.59 -66.09 -0.17 2.26 16 16 H 0.09 1.81 7.45 -51.93 -0.39 1.43 16 17 N -0.71 -11.77 4.45 -52.03 -0.23 -12.00 16 18 C 0.52 9.19 7.82 -10.99 -0.09 9.10 16 19 O -0.53 -11.87 15.68 5.56 0.09 -11.78 16 20 C -0.05 -0.69 6.33 -29.03 -0.18 -0.87 16 21 C 0.25 3.91 6.63 -156.85 -1.04 2.87 16 22 N -0.54 -7.59 11.19 -11.98 -0.13 -7.73 16 23 C 0.26 2.58 13.13 -90.66 -1.19 1.39 16 24 N -0.49 -5.19 7.45 29.53 0.22 -4.97 16 25 H 0.44 2.89 8.96 -182.33 -1.63 1.26 16 26 N -0.30 -4.67 12.80 32.42 0.41 -4.26 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 30 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.02 0.29 7.98 -51.93 -0.41 -0.12 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 36 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 37 H 0.05 1.48 7.38 -51.93 -0.38 1.10 16 38 H 0.40 5.50 7.11 -40.82 -0.29 5.21 16 39 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -37.99 338.72 -9.19 -47.18 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.16 Total: 3.65 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -2.45 Total: 10.35 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: 0.27 Total: -71.92 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.99 -9.19 -47.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977483479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.396 kcal (2) G-P(sol) polarization free energy of solvation -37.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds