Wall clock time and date at job start Tue Mar 31 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 110.91731 * 2 1 4 4 C 1.54910 * 111.00621 * 236.09215 * 2 1 3 5 5 N 1.47424 * 104.83696 * 278.93571 * 4 2 1 6 6 C 1.36928 * 125.64769 * 155.91350 * 5 4 2 7 7 H 1.08002 * 120.00555 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99591 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00229 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46938 * 60.00478 * 10 8 6 12 12 H 1.48497 * 109.46831 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47251 * 300.00037 * 10 8 6 14 14 C 1.47024 * 108.70048 * 335.87338 * 5 4 2 15 15 C 1.54325 * 107.27277 * 1.05312 * 14 5 4 16 16 H 1.09002 * 110.86998 * 140.62739 * 15 14 5 17 17 N 1.46496 * 110.72309 * 263.83521 * 15 14 5 18 18 C 1.34776 * 119.99846 * 268.51934 * 17 15 14 19 19 O 1.21282 * 119.99940 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00035 * 179.97438 * 18 17 15 21 21 C 1.50706 * 109.47294 * 180.02562 * 20 18 17 22 22 N 1.33240 * 125.52803 * 269.69583 * 21 20 18 23 23 C 1.30826 * 109.82707 * 179.85181 * 22 21 20 24 24 N 1.34424 * 108.08028 * 0.40435 * 23 22 21 25 25 H 0.97002 * 126.83204 * 179.71407 * 24 23 22 26 26 N 1.30714 * 125.52159 * 89.99986 * 21 20 18 27 27 H 1.08996 * 109.46912 * 296.09906 * 1 2 3 28 28 H 1.08999 * 109.46985 * 56.10528 * 1 2 3 29 29 H 1.09007 * 109.46632 * 176.10254 * 1 2 3 30 30 H 1.09000 * 109.47471 * 183.90357 * 3 2 1 31 31 H 1.09008 * 109.47026 * 303.89829 * 3 2 1 32 32 H 1.08994 * 109.47406 * 63.89614 * 3 2 1 33 33 H 1.09004 * 110.36267 * 37.77809 * 4 2 1 34 34 H 1.09004 * 110.36886 * 159.98203 * 4 2 1 35 35 H 0.96997 * 119.99472 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.87896 * 241.64264 * 14 5 4 37 37 H 1.08995 * 109.88237 * 120.47607 * 14 5 4 38 38 H 0.97002 * 120.00387 * 88.52480 * 17 15 14 39 39 H 1.09001 * 109.46665 * 60.00498 * 20 18 17 40 40 H 1.09000 * 109.47722 * 300.00830 * 20 18 17 41 41 H 1.07997 * 125.96318 * 180.19545 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 2.0140 -2.2160 -0.7732 6 6 1.9463 -3.3000 -1.6070 7 1 1.9426 -3.1585 -2.6777 8 6 1.8825 -4.5811 -1.0761 9 7 1.8866 -4.7536 0.2288 10 14 1.7895 -6.0600 -2.2136 11 1 2.9925 -6.0918 -3.0835 12 1 1.7301 -7.3037 -1.4044 13 1 0.5713 -5.9601 -3.0568 14 6 2.0285 -2.2646 0.6962 15 6 2.0862 -0.8079 1.2023 16 1 1.4541 -0.6766 2.0806 17 7 3.4667 -0.4155 1.4962 18 6 3.9655 -0.5839 2.7369 19 8 3.2715 -1.0606 3.6099 20 6 5.3857 -0.1808 3.0392 21 6 5.6935 -0.4713 4.4856 22 7 5.5172 0.3746 5.4998 23 6 5.8805 -0.1942 6.6204 24 7 6.3125 -1.4353 6.3374 25 1 6.6484 -2.0919 6.9674 26 7 6.1818 -1.5922 4.9478 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5731 -0.8530 29 1 -0.3633 -1.0254 -0.0699 30 1 3.1636 1.4025 -0.0700 31 1 1.6705 1.9732 -0.8531 32 1 1.7836 1.9300 0.9228 33 1 1.4672 -0.6462 -2.0836 34 1 3.1176 -0.5220 -1.4037 35 1 1.8416 -5.6487 0.5997 36 1 2.9064 -2.8116 1.0402 37 1 1.1219 -2.7479 1.0600 38 1 4.0218 -0.0345 0.7979 39 1 5.5093 0.8852 2.8481 40 1 6.0670 -0.7453 2.4026 41 1 5.8434 0.2560 7.6014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977483479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:08 Heat of formation + Delta-G solvation = 48.778114 kcal Electronic energy + Delta-G solvation = -24040.639360 eV Core-core repulsion = 20571.039507 eV Total energy + Delta-G solvation = -3469.599854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05217 -41.16956 -39.40385 -35.67014 -34.53144 -34.20185 -32.66679 -32.58704 -30.61743 -29.22881 -27.94790 -27.34731 -25.16506 -23.76129 -22.71321 -21.77338 -21.04765 -20.06261 -19.23596 -18.67076 -18.18381 -17.31597 -16.69888 -16.46663 -16.20689 -15.69305 -15.56480 -15.40695 -14.97769 -14.75321 -14.31989 -13.98446 -13.75797 -13.42606 -13.19252 -13.11538 -13.04550 -12.89839 -12.76477 -12.63212 -12.54952 -12.16472 -11.83329 -11.71228 -11.50108 -11.28276 -11.23168 -11.07365 -10.94757 -10.74261 -10.57597 -9.95105 -8.87670 -7.82445 -5.19071 0.67708 1.43841 1.47687 1.54034 1.66496 1.75215 1.88150 2.42805 2.50692 3.18654 3.35928 3.53292 3.70080 3.74628 3.92874 4.00298 4.11914 4.20047 4.43825 4.45937 4.53716 4.60152 4.73653 4.88582 4.93062 5.00006 5.09324 5.17591 5.20655 5.26550 5.33498 5.37154 5.39751 5.47524 5.60520 5.73535 5.78126 6.18826 6.29052 6.62428 7.09176 7.11204 7.32840 7.79780 8.44094 9.26701 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.004543 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.723411 B = 6161.719310 C = 7484.371091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.956 5.956 10 Si 0.977 3.023 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.274 1.274 14 C 0.194 3.806 15 C 0.139 3.861 16 H 0.073 0.927 17 N -0.696 5.696 18 C 0.518 3.482 19 O -0.586 6.586 20 C -0.043 4.043 21 C 0.234 3.766 22 N -0.569 5.569 23 C 0.274 3.726 24 N -0.477 5.477 25 H 0.457 0.543 26 N -0.348 5.348 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.242 0.758 36 H -0.001 1.001 37 H 0.001 0.999 38 H 0.413 0.587 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 16.082 7.966 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.606 5.606 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.228 1.228 13 H -0.200 1.200 14 C 0.068 3.932 15 C 0.033 3.967 16 H 0.091 0.909 17 N -0.347 5.347 18 C 0.304 3.696 19 O -0.466 6.466 20 C -0.085 4.085 21 C -0.049 4.049 22 N -0.298 5.298 23 C -0.024 4.024 24 N -0.197 5.197 25 H 0.305 0.695 26 N -0.178 5.178 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.251 0.749 39 H 0.175 0.825 40 H 0.150 0.850 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 8.079 15.279 8.065 19.072 hybrid contribution 0.142 -1.995 0.134 2.005 sum 8.221 13.283 8.199 17.642 Atomic orbital electron populations 1.21595 0.93129 1.00893 1.02543 1.22000 0.96499 0.96083 0.93049 1.21646 1.01335 0.92114 1.02939 1.21913 0.97903 0.83095 0.95752 1.44678 1.86591 1.01696 1.01664 1.19472 1.42182 0.85063 0.89847 0.89366 1.25684 1.02977 1.00429 0.97202 1.70250 1.58603 1.20471 1.11239 0.85162 0.78428 0.78325 0.77513 1.19989 1.22778 1.20021 1.21063 0.96873 0.91576 0.83737 1.22032 0.82790 0.94472 0.97440 0.90865 1.45706 1.14009 1.63741 1.11288 1.20765 0.89438 0.77282 0.82113 1.90696 1.62174 1.45992 1.47733 1.19985 0.93107 1.07288 0.88098 1.23622 0.96458 0.87693 0.97124 1.70319 1.26453 1.34636 0.98434 1.27068 0.91544 0.82873 1.00909 1.48011 1.50379 1.15312 1.05970 0.69497 1.77936 1.26285 1.22914 0.90685 0.91816 0.90218 0.95374 0.91273 0.90405 0.91843 0.93401 0.94625 0.94881 0.98302 0.98115 0.74878 0.82534 0.84986 0.70848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.57 71.98 0.62 -3.26 16 2 C -0.07 -2.36 0.83 -50.79 -0.04 -2.41 16 3 C -0.12 -2.63 8.22 71.98 0.59 -2.04 16 4 C 0.14 5.22 6.12 86.86 0.53 5.75 16 5 N -0.62 -31.79 3.38 -691.98 -2.34 -34.13 16 6 C -0.24 -13.38 10.28 84.04 0.86 -12.52 16 7 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 8 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 9 N -0.96 -61.43 10.31 21.65 0.22 -61.20 16 10 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.19 10.25 4.79 86.73 0.42 10.66 16 15 C 0.14 5.47 2.59 46.18 0.12 5.59 16 16 H 0.07 3.13 7.45 -2.39 -0.02 3.11 16 17 N -0.70 -22.67 4.45 -436.91 -1.95 -24.62 16 18 C 0.52 18.31 7.82 87.66 0.69 19.00 16 19 O -0.59 -27.06 15.68 -3.04 -0.05 -27.11 16 20 C -0.04 -1.11 6.33 29.10 0.18 -0.93 16 21 C 0.23 7.10 6.63 138.63 0.92 8.02 16 22 N -0.57 -15.33 11.19 -191.81 -2.15 -17.48 16 23 C 0.27 4.87 13.13 180.36 2.37 7.24 16 24 N -0.48 -9.68 7.45 -60.50 -0.45 -10.13 16 25 H 0.46 5.45 8.96 -213.09 -1.91 3.54 16 26 N -0.35 -10.88 12.80 -51.33 -0.66 -11.54 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 1.09 7.91 -2.38 -0.02 1.07 16 30 H 0.07 1.27 6.48 -2.39 -0.02 1.25 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.75 8.05 -2.39 -0.02 1.74 16 34 H 0.04 1.24 7.98 -2.39 -0.02 1.22 16 35 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.00 -0.08 7.41 -2.38 -0.02 -0.09 16 37 H 0.00 0.04 7.38 -2.39 -0.02 0.03 16 38 H 0.41 10.52 7.11 -92.71 -0.66 9.86 16 39 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.28 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -90.16 338.72 0.88 -89.29 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -1.51 Total: 16.16 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 7.72 Total: 31.43 kcal Atomic # 7 Polarization: -151.77 SS G_CDS: -7.31 Total: -159.09 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -90.16 0.88 -89.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977483479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.064 kcal (2) G-P(sol) polarization free energy of solvation -90.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds