Wall clock time and date at job start Tue Mar 31 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.77947 * 2 1 4 4 C 1.54332 * 110.85189 * 236.93130 * 2 1 3 5 5 N 1.47027 * 107.26234 * 219.67262 * 4 2 1 6 6 C 1.36939 * 125.64619 * 178.85252 * 5 4 2 7 7 H 1.07993 * 119.99853 * 191.31084 * 6 5 4 8 8 C 1.38811 * 119.99987 * 11.30898 * 6 5 4 9 9 N 1.31619 * 120.00045 * 206.02419 * 8 6 5 10 10 Si 1.86801 * 120.00159 * 26.29166 * 8 6 5 11 11 H 1.48506 * 109.47248 * 275.47175 * 10 8 6 12 12 H 1.48502 * 109.47108 * 35.47334 * 10 8 6 13 13 H 1.48494 * 109.47241 * 155.47150 * 10 8 6 14 14 C 1.47421 * 108.70320 * 358.58441 * 5 4 2 15 15 C 1.54909 * 104.83323 * 24.35752 * 14 5 4 16 16 H 1.09000 * 111.00454 * 204.91637 * 15 14 5 17 17 N 1.46500 * 111.00541 * 81.06422 * 15 14 5 18 18 C 1.34776 * 119.99968 * 86.45369 * 17 15 14 19 19 O 1.21280 * 120.00152 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99884 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47156 * 179.97438 * 20 18 17 22 22 N 1.33241 * 125.52815 * 269.69497 * 21 20 18 23 23 C 1.30834 * 109.82865 * 179.85113 * 22 21 20 24 24 N 1.34431 * 108.07597 * 0.40612 * 23 22 21 25 25 H 0.97001 * 126.82190 * 179.78692 * 24 23 22 26 26 N 1.30715 * 125.52525 * 89.99793 * 21 20 18 27 27 H 1.08999 * 109.47153 * 296.76511 * 1 2 3 28 28 H 1.08999 * 109.46923 * 56.76154 * 1 2 3 29 29 H 1.08994 * 109.46641 * 176.76022 * 1 2 3 30 30 H 1.08997 * 109.47599 * 183.23411 * 3 2 1 31 31 H 1.09005 * 109.46978 * 303.23697 * 3 2 1 32 32 H 1.09006 * 109.47398 * 63.23182 * 3 2 1 33 33 H 1.09001 * 109.98941 * 100.19840 * 4 2 1 34 34 H 1.08998 * 109.77772 * 339.02685 * 4 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36316 * 143.19908 * 14 5 4 37 37 H 1.09005 * 110.36825 * 265.40524 * 14 5 4 38 38 H 0.97003 * 119.99810 * 266.45180 * 17 15 14 39 39 H 1.09000 * 109.47343 * 300.00216 * 20 18 17 40 40 H 1.09008 * 109.47087 * 59.99925 * 20 18 17 41 41 H 1.07993 * 125.96447 * 180.12027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5507 -0.7388 6 6 4.0045 -2.3968 -1.5016 7 1 4.7237 -3.0500 -1.0299 8 6 3.8503 -2.4151 -2.8810 9 7 4.1488 -3.5009 -3.5623 10 14 3.2262 -0.8961 -3.7713 11 1 1.7417 -0.8779 -3.7383 12 1 3.7512 0.3209 -3.1015 13 1 3.6897 -0.9236 -5.1818 14 6 3.4633 -1.2497 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 2.1849 -0.1517 2.0871 17 7 1.2271 -1.9487 1.5145 18 6 1.2971 -2.5413 2.7230 19 8 2.0656 -2.1201 3.5614 20 6 0.4213 -3.7281 3.0321 21 6 0.6917 -4.1995 4.4376 22 7 1.5977 -5.1116 4.7875 23 6 1.5755 -5.2846 6.0842 24 7 0.6306 -4.4772 6.5966 25 1 0.3843 -4.3903 7.5308 26 7 0.0716 -3.7839 5.5107 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3632 -1.0260 -0.0581 30 1 3.1610 1.4063 -0.0580 31 1 1.6751 1.9700 -0.8596 32 1 1.7690 1.9345 0.9176 33 1 2.3815 -0.0969 -1.9964 34 1 1.3157 -1.4687 -1.5828 35 1 4.0415 -3.5136 -4.5262 36 1 3.7961 -2.1425 1.2170 37 1 4.1946 -0.4490 0.7987 38 1 0.6127 -2.2858 0.8438 39 1 -0.6261 -3.4406 2.9400 40 1 0.6399 -4.5335 2.3307 41 1 2.2031 -5.9615 6.6446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977483486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:12 Heat of formation + Delta-G solvation = 85.038275 kcal Electronic energy + Delta-G solvation = -24105.267773 eV Core-core repulsion = 20637.240278 eV Total energy + Delta-G solvation = -3468.027495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19358 -39.94416 -38.16220 -33.95712 -33.38064 -33.05977 -31.77524 -31.36037 -29.48448 -28.08918 -26.83258 -25.91402 -23.65812 -22.90415 -21.42120 -20.43192 -19.75977 -19.01267 -18.43221 -17.25298 -16.75338 -16.05173 -15.49007 -15.28431 -15.15874 -14.67582 -14.15431 -13.81803 -13.73839 -13.29451 -13.19934 -12.95445 -12.69034 -12.29262 -12.23930 -12.03400 -12.00486 -11.58810 -11.43132 -11.16501 -10.83378 -10.75734 -10.41447 -10.27913 -10.19190 -10.12530 -9.92396 -9.77966 -9.51977 -9.23386 -8.82472 -8.50847 -7.05513 -5.90696 -3.14672 1.49453 2.51438 2.72851 2.87842 3.35809 3.49608 3.50784 3.52603 4.02329 4.51584 4.57796 4.73417 4.80367 4.92026 5.04394 5.13775 5.17173 5.30902 5.46832 5.47237 5.58161 5.69778 5.81407 5.91093 5.98295 6.08147 6.08908 6.19562 6.24888 6.27859 6.40499 6.42778 6.57509 6.66046 6.77382 6.88409 6.94492 7.68606 7.79602 7.97903 8.34166 8.47232 8.87687 9.73804 10.20710 11.25439 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004283 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.138978 B = 6535.615828 C = 7295.976507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.125 3.875 5 N -0.606 5.606 6 C -0.238 4.238 7 H 0.094 0.906 8 C 0.020 3.980 9 N -0.905 5.905 10 Si 0.882 3.118 11 H -0.287 1.287 12 H -0.281 1.281 13 H -0.306 1.306 14 C 0.126 3.874 15 C 0.143 3.857 16 H 0.093 0.907 17 N -0.704 5.704 18 C 0.525 3.475 19 O -0.538 6.538 20 C -0.052 4.052 21 C 0.255 3.745 22 N -0.530 5.530 23 C 0.261 3.739 24 N -0.487 5.487 25 H 0.440 0.560 26 N -0.308 5.308 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.402 0.598 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 1.384 16.891 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.000 4.000 5 N -0.333 5.333 6 C -0.364 4.364 7 H 0.112 0.888 8 C -0.178 4.178 9 N -0.549 5.549 10 Si 0.715 3.285 11 H -0.214 1.214 12 H -0.208 1.208 13 H -0.234 1.234 14 C 0.000 4.000 15 C 0.037 3.963 16 H 0.111 0.889 17 N -0.356 5.356 18 C 0.309 3.691 19 O -0.415 6.415 20 C -0.095 4.095 21 C -0.028 4.028 22 N -0.258 5.258 23 C -0.038 4.038 24 N -0.205 5.205 25 H 0.285 0.715 26 N -0.137 5.137 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.238 0.762 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.795 1.885 16.987 20.215 hybrid contribution -0.432 0.551 -0.264 0.749 sum -11.228 2.436 16.723 20.289 Atomic orbital electron populations 1.21729 0.93936 1.01685 1.01694 1.21867 0.95586 0.95774 0.95569 1.21737 1.01847 0.94054 1.01342 1.21798 0.90512 0.93625 0.94019 1.44788 1.30384 1.51808 1.06319 1.18666 1.17639 1.11811 0.88322 0.88827 1.24785 0.99839 0.97202 0.96018 1.69901 1.52212 1.25418 1.07416 0.87014 0.78010 0.85577 0.77938 1.21446 1.20781 1.23417 1.21978 0.93403 0.98681 0.85980 1.22122 0.91181 0.86399 0.96568 0.88876 1.45772 1.42596 1.32573 1.14647 1.20024 0.83280 0.83676 0.82127 1.90705 1.39049 1.64452 1.47285 1.19923 1.01634 0.98314 0.89585 1.23306 0.91631 0.92733 0.95121 1.70400 1.23260 1.20387 1.11749 1.26081 0.92303 0.94643 0.90781 1.48070 1.29678 1.32386 1.10343 0.71504 1.77948 1.23082 1.18736 0.93947 0.92425 0.92361 0.92506 0.91811 0.92378 0.92647 0.95192 0.94184 0.92843 0.92772 0.94980 0.76190 0.86635 0.85686 0.76159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.08 37.16 0.30 -1.39 16 2 C -0.09 -1.39 0.81 -152.67 -0.12 -1.51 16 3 C -0.13 -1.93 8.39 37.16 0.31 -1.62 16 4 C 0.13 2.63 4.12 -3.06 -0.01 2.62 16 5 N -0.61 -14.51 3.28 -170.07 -0.56 -15.06 16 6 C -0.24 -6.76 10.57 -15.06 -0.16 -6.92 16 7 H 0.09 2.86 8.06 -52.49 -0.42 2.43 16 8 C 0.02 0.57 5.43 -17.43 -0.09 0.48 16 9 N -0.91 -27.98 13.97 55.49 0.78 -27.20 16 10 Si 0.88 22.65 24.30 -169.99 -4.13 18.52 16 11 H -0.29 -7.03 6.74 56.52 0.38 -6.65 16 12 H -0.28 -7.12 6.74 56.52 0.38 -6.74 16 13 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 14 C 0.13 2.61 6.61 -2.53 -0.02 2.59 16 15 C 0.14 2.40 2.56 -65.78 -0.17 2.23 16 16 H 0.09 1.54 7.63 -51.93 -0.40 1.14 16 17 N -0.70 -10.70 4.69 -51.73 -0.24 -10.95 16 18 C 0.52 8.34 7.82 -10.99 -0.09 8.25 16 19 O -0.54 -10.59 15.78 5.56 0.09 -10.50 16 20 C -0.05 -0.66 6.33 -29.04 -0.18 -0.84 16 21 C 0.26 3.68 6.63 -156.85 -1.04 2.64 16 22 N -0.53 -7.55 11.19 -11.98 -0.13 -7.69 16 23 C 0.26 2.49 13.13 -90.65 -1.19 1.30 16 24 N -0.49 -4.54 7.45 29.53 0.22 -4.32 16 25 H 0.44 2.22 8.96 -182.34 -1.63 0.59 16 26 N -0.31 -4.17 12.80 32.42 0.41 -3.75 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 30 H 0.06 1.02 7.58 -51.93 -0.39 0.63 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.70 3.42 -51.93 -0.18 0.52 16 34 H 0.04 0.87 7.49 -51.93 -0.39 0.48 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.66 7.81 -51.93 -0.41 0.26 16 38 H 0.40 5.44 6.88 -40.82 -0.28 5.16 16 39 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 41 H 0.22 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -38.08 332.07 -8.01 -46.09 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.99 Total: 2.02 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -2.46 Total: 7.83 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: 0.48 Total: -68.97 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.08 -8.01 -46.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977483486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.130 kcal (2) G-P(sol) polarization free energy of solvation -38.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds