Wall clock time and date at job start Tue Mar 31 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.77947 * 2 1 4 4 C 1.54332 * 110.85189 * 236.93130 * 2 1 3 5 5 N 1.47027 * 107.26234 * 219.67262 * 4 2 1 6 6 C 1.36939 * 125.64619 * 178.85252 * 5 4 2 7 7 H 1.07993 * 119.99853 * 191.31084 * 6 5 4 8 8 C 1.38811 * 119.99987 * 11.30898 * 6 5 4 9 9 N 1.31619 * 120.00045 * 206.02419 * 8 6 5 10 10 Si 1.86801 * 120.00159 * 26.29166 * 8 6 5 11 11 H 1.48506 * 109.47248 * 275.47175 * 10 8 6 12 12 H 1.48502 * 109.47108 * 35.47334 * 10 8 6 13 13 H 1.48494 * 109.47241 * 155.47150 * 10 8 6 14 14 C 1.47421 * 108.70320 * 358.58441 * 5 4 2 15 15 C 1.54909 * 104.83323 * 24.35752 * 14 5 4 16 16 H 1.09000 * 111.00454 * 204.91637 * 15 14 5 17 17 N 1.46500 * 111.00541 * 81.06422 * 15 14 5 18 18 C 1.34776 * 119.99968 * 86.45369 * 17 15 14 19 19 O 1.21280 * 120.00152 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99884 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47156 * 179.97438 * 20 18 17 22 22 N 1.33241 * 125.52815 * 269.69497 * 21 20 18 23 23 C 1.30834 * 109.82865 * 179.85113 * 22 21 20 24 24 N 1.34431 * 108.07597 * 0.40612 * 23 22 21 25 25 H 0.97001 * 126.82190 * 179.78692 * 24 23 22 26 26 N 1.30715 * 125.52525 * 89.99793 * 21 20 18 27 27 H 1.08999 * 109.47153 * 296.76511 * 1 2 3 28 28 H 1.08999 * 109.46923 * 56.76154 * 1 2 3 29 29 H 1.08994 * 109.46641 * 176.76022 * 1 2 3 30 30 H 1.08997 * 109.47599 * 183.23411 * 3 2 1 31 31 H 1.09005 * 109.46978 * 303.23697 * 3 2 1 32 32 H 1.09006 * 109.47398 * 63.23182 * 3 2 1 33 33 H 1.09001 * 109.98941 * 100.19840 * 4 2 1 34 34 H 1.08998 * 109.77772 * 339.02685 * 4 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36316 * 143.19908 * 14 5 4 37 37 H 1.09005 * 110.36825 * 265.40524 * 14 5 4 38 38 H 0.97003 * 119.99810 * 266.45180 * 17 15 14 39 39 H 1.09000 * 109.47343 * 300.00216 * 20 18 17 40 40 H 1.09008 * 109.47087 * 59.99925 * 20 18 17 41 41 H 1.07993 * 125.96447 * 180.12027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5507 -0.7388 6 6 4.0045 -2.3968 -1.5016 7 1 4.7237 -3.0500 -1.0299 8 6 3.8503 -2.4151 -2.8810 9 7 4.1488 -3.5009 -3.5623 10 14 3.2262 -0.8961 -3.7713 11 1 1.7417 -0.8779 -3.7383 12 1 3.7512 0.3209 -3.1015 13 1 3.6897 -0.9236 -5.1818 14 6 3.4633 -1.2497 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 2.1849 -0.1517 2.0871 17 7 1.2271 -1.9487 1.5145 18 6 1.2971 -2.5413 2.7230 19 8 2.0656 -2.1201 3.5614 20 6 0.4213 -3.7281 3.0321 21 6 0.6917 -4.1995 4.4376 22 7 1.5977 -5.1116 4.7875 23 6 1.5755 -5.2846 6.0842 24 7 0.6306 -4.4772 6.5966 25 1 0.3843 -4.3903 7.5308 26 7 0.0716 -3.7839 5.5107 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3632 -1.0260 -0.0581 30 1 3.1610 1.4063 -0.0580 31 1 1.6751 1.9700 -0.8596 32 1 1.7690 1.9345 0.9176 33 1 2.3815 -0.0969 -1.9964 34 1 1.3157 -1.4687 -1.5828 35 1 4.0415 -3.5136 -4.5262 36 1 3.7961 -2.1425 1.2170 37 1 4.1946 -0.4490 0.7987 38 1 0.6127 -2.2858 0.8438 39 1 -0.6261 -3.4406 2.9400 40 1 0.6399 -4.5335 2.3307 41 1 2.2031 -5.9615 6.6446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977483486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:12 Heat of formation + Delta-G solvation = 55.740280 kcal Electronic energy + Delta-G solvation = -24106.538229 eV Core-core repulsion = 20637.240278 eV Total energy + Delta-G solvation = -3469.297952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.05808 -41.31328 -39.57100 -35.71622 -34.53245 -34.21495 -33.34894 -32.68270 -30.70360 -29.44182 -27.98630 -27.62730 -25.29400 -23.76105 -22.82695 -21.85124 -20.99640 -20.31977 -19.28015 -19.04004 -18.11840 -17.50697 -16.98326 -16.48773 -16.23036 -15.91430 -15.65098 -15.35240 -15.08245 -14.87638 -14.46140 -14.31428 -14.12148 -13.73381 -13.35054 -13.22014 -13.17373 -13.04923 -12.91669 -12.88006 -12.53684 -12.29139 -11.80643 -11.73403 -11.62067 -11.25535 -11.13363 -11.05042 -10.94936 -10.77528 -10.57834 -10.06079 -9.08784 -8.16265 -5.37248 0.65291 1.29932 1.40149 1.49417 1.62589 1.74114 1.87508 2.38895 2.41997 3.01528 3.19538 3.33235 3.41869 3.67833 3.75164 3.89015 3.95585 4.18057 4.27745 4.34423 4.45045 4.53698 4.59445 4.67953 4.75129 4.84439 4.86800 4.94179 5.02710 5.06290 5.19485 5.25580 5.31209 5.35099 5.45358 5.56503 5.64473 6.09786 6.28970 6.56179 6.75968 7.12941 7.25031 7.55461 8.09730 9.03508 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004283 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.138978 B = 6535.615828 C = 7295.976507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.133 4.133 4 C 0.119 3.881 5 N -0.619 5.619 6 C -0.235 4.235 7 H 0.054 0.946 8 C -0.035 4.035 9 N -0.952 5.952 10 Si 0.950 3.050 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.313 1.313 14 C 0.123 3.877 15 C 0.156 3.844 16 H 0.103 0.897 17 N -0.698 5.698 18 C 0.524 3.476 19 O -0.579 6.579 20 C -0.048 4.048 21 C 0.235 3.765 22 N -0.581 5.581 23 C 0.274 3.726 24 N -0.474 5.474 25 H 0.458 0.542 26 N -0.333 5.333 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.412 0.588 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 2.925 18.166 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C -0.190 4.190 4 C -0.005 4.005 5 N -0.345 5.345 6 C -0.364 4.364 7 H 0.072 0.928 8 C -0.229 4.229 9 N -0.599 5.599 10 Si 0.780 3.220 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.242 1.242 14 C -0.003 4.003 15 C 0.049 3.951 16 H 0.121 0.879 17 N -0.350 5.350 18 C 0.311 3.689 19 O -0.459 6.459 20 C -0.090 4.090 21 C -0.049 4.049 22 N -0.310 5.310 23 C -0.024 4.024 24 N -0.194 5.194 25 H 0.307 0.693 26 N -0.164 5.164 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.250 0.750 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -13.338 3.446 18.312 22.915 hybrid contribution 0.446 -0.032 -0.504 0.673 sum -12.893 3.414 17.808 22.249 Atomic orbital electron populations 1.21749 0.90716 1.02785 1.03492 1.21865 0.97973 0.95611 0.92035 1.21772 1.00501 0.93276 1.03487 1.21972 0.89101 0.93363 0.96102 1.44794 1.30922 1.51618 1.07193 1.18544 1.17192 1.11699 0.88914 0.92849 1.25409 1.01274 0.99616 0.96636 1.70021 1.54884 1.27424 1.07604 0.85925 0.78807 0.81426 0.75822 1.18923 1.20268 1.24216 1.22078 0.96387 0.97523 0.84302 1.21934 0.88997 0.86967 0.97158 0.87906 1.45738 1.42212 1.32202 1.14848 1.20583 0.82858 0.83950 0.81549 1.90679 1.40847 1.65791 1.48552 1.19980 1.02684 0.96874 0.89425 1.23554 0.92185 0.93316 0.95813 1.70372 1.24581 1.21756 1.14328 1.26980 0.91620 0.93969 0.89880 1.48000 1.29158 1.31538 1.10666 0.69293 1.77822 1.24065 1.19804 0.94669 0.90118 0.91159 0.91806 0.93940 0.91142 0.89745 0.96318 0.94637 0.92896 0.95559 0.94843 0.75043 0.83314 0.84984 0.71324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.08 71.98 0.58 -2.16 16 2 C -0.07 -2.15 0.81 -50.99 -0.04 -2.19 16 3 C -0.13 -3.43 8.39 71.98 0.60 -2.83 16 4 C 0.12 4.79 4.12 86.73 0.36 5.15 16 5 N -0.62 -29.92 3.28 -691.97 -2.27 -32.19 16 6 C -0.24 -13.86 10.57 84.03 0.89 -12.97 16 7 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 8 C -0.03 -2.07 5.43 84.86 0.46 -1.61 16 9 N -0.95 -60.68 13.97 21.65 0.30 -60.37 16 10 Si 0.95 47.15 24.30 68.60 1.67 48.82 16 11 H -0.26 -11.96 6.74 99.48 0.67 -11.29 16 12 H -0.28 -13.35 6.74 99.48 0.67 -12.68 16 13 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 14 C 0.12 5.18 6.61 86.86 0.57 5.75 16 15 C 0.16 4.99 2.56 46.38 0.12 5.11 16 16 H 0.10 3.19 7.63 -2.39 -0.02 3.17 16 17 N -0.70 -20.21 4.69 -435.97 -2.05 -22.26 16 18 C 0.52 16.25 7.82 87.66 0.69 16.94 16 19 O -0.58 -22.73 15.78 -3.03 -0.05 -22.78 16 20 C -0.05 -1.15 6.33 29.10 0.18 -0.97 16 21 C 0.23 6.57 6.63 138.63 0.92 7.49 16 22 N -0.58 -16.13 11.19 -191.81 -2.15 -18.27 16 23 C 0.27 4.68 13.13 180.36 2.37 7.05 16 24 N -0.47 -7.93 7.45 -60.49 -0.45 -8.38 16 25 H 0.46 3.59 8.96 -213.10 -1.91 1.68 16 26 N -0.33 -8.60 12.80 -51.33 -0.66 -9.26 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.27 6.36 -2.39 -0.02 1.25 16 30 H 0.04 1.27 7.58 -2.39 -0.02 1.25 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.02 0.83 3.42 -2.39 -0.01 0.83 16 34 H 0.04 1.47 7.49 -2.39 -0.02 1.45 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.03 1.40 7.81 -2.38 -0.02 1.38 16 38 H 0.41 10.31 6.88 -92.71 -0.64 9.67 16 39 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.27 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -86.40 332.07 0.50 -85.90 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -1.55 Total: 14.06 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 7.70 Total: 24.75 kcal Atomic # 7 Polarization: -143.48 SS G_CDS: -7.27 Total: -150.74 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -86.40 0.50 -85.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977483486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.637 kcal (2) G-P(sol) polarization free energy of solvation -86.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds