Wall clock time and date at job start Tue Mar 31 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.77885 * 2 1 4 4 C 1.54326 * 110.71960 * 236.76292 * 2 1 3 5 5 N 1.47020 * 107.27002 * 219.44526 * 4 2 1 6 6 C 1.36940 * 125.64793 * 178.98706 * 5 4 2 7 7 H 1.07991 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99886 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00309 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00012 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47044 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47033 * 120.00126 * 10 8 6 13 13 H 1.48500 * 109.46861 * 240.00562 * 10 8 6 14 14 C 1.47423 * 108.70434 * 358.93439 * 5 4 2 15 15 C 1.54915 * 104.83122 * 24.13584 * 14 5 4 16 16 H 1.08992 * 111.03715 * 204.90129 * 15 14 5 17 17 N 1.46494 * 111.00555 * 81.05979 * 15 14 5 18 18 C 1.34780 * 120.00098 * 92.80912 * 17 15 14 19 19 O 1.21273 * 119.99743 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00004 * 179.97438 * 18 17 15 21 21 N 1.46505 * 109.46931 * 179.97438 * 20 18 17 22 22 C 1.34428 * 126.82137 * 125.02213 * 21 20 18 23 23 N 1.30829 * 108.07758 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.82920 * 0.02562 * 23 22 21 25 25 N 1.30714 * 108.94945 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47268 * 296.75846 * 1 2 3 27 27 H 1.09001 * 109.47525 * 56.76493 * 1 2 3 28 28 H 1.09003 * 109.47415 * 176.75945 * 1 2 3 29 29 H 1.08993 * 109.47036 * 183.24230 * 3 2 1 30 30 H 1.09002 * 109.47011 * 303.24099 * 3 2 1 31 31 H 1.08992 * 109.47022 * 63.23723 * 3 2 1 32 32 H 1.08999 * 109.88045 * 338.85738 * 4 2 1 33 33 H 1.08996 * 109.88497 * 100.02390 * 4 2 1 34 34 H 0.96992 * 120.00127 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.37114 * 265.29466 * 14 5 4 36 36 H 1.09002 * 110.36293 * 142.96531 * 14 5 4 37 37 H 0.97002 * 120.00345 * 272.80429 * 17 15 14 38 38 H 1.09005 * 109.46920 * 60.00018 * 20 18 17 39 39 H 1.08994 * 109.47333 * 299.99855 * 20 18 17 40 40 H 1.08003 * 125.95916 * 0.03061 * 22 21 20 41 41 H 1.08002 * 125.53210 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2444 -1.5507 -0.7391 6 6 4.0044 -2.3968 -1.5019 7 1 3.7613 -2.5505 -2.5428 8 6 5.0871 -3.0568 -0.9372 9 7 5.3831 -2.8699 0.3316 10 14 6.1233 -4.2115 -1.9776 11 1 5.5856 -4.2480 -3.3614 12 1 7.5270 -3.7278 -2.0051 13 1 6.0812 -5.5762 -1.3936 14 6 3.4633 -1.2497 0.6874 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2272 -1.9488 1.5144 18 6 1.2025 -2.4618 2.7605 19 8 1.8859 -1.9689 3.6328 20 6 0.3259 -3.6479 3.0699 21 7 0.4770 -4.0120 4.4809 22 6 -0.5042 -4.1300 5.3921 23 7 0.0394 -4.4706 6.5323 24 6 1.3597 -4.5784 6.3893 25 7 1.6759 -4.3073 5.1503 26 1 -0.3634 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8596 28 1 -0.3634 -1.0260 -0.0581 29 1 3.1609 1.4062 -0.0581 30 1 1.6750 1.9700 -0.8595 31 1 1.7690 1.9343 0.9175 32 1 1.3129 -1.4758 -1.5776 33 1 2.3740 -0.1024 -1.9978 34 1 6.1394 -3.3313 0.7262 35 1 4.1932 -0.4478 0.7984 36 1 3.7960 -2.1426 1.2168 37 1 0.6808 -2.3433 0.8167 38 1 0.6203 -4.4904 2.4440 39 1 -0.7147 -3.3927 2.8697 40 1 -1.5577 -3.9722 5.2137 41 1 2.0558 -4.8464 7.1703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977555680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:15 Heat of formation + Delta-G solvation = 91.909578 kcal Electronic energy + Delta-G solvation = -24287.573116 eV Core-core repulsion = 20819.843583 eV Total energy + Delta-G solvation = -3467.729533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97351 -39.76697 -37.99517 -33.90827 -33.88483 -33.12330 -31.10418 -30.74778 -28.88823 -27.65183 -26.58618 -25.64862 -23.51358 -22.20742 -21.89714 -20.62111 -19.90760 -18.79929 -17.34181 -17.13001 -16.71835 -15.78746 -15.63274 -14.92553 -14.76472 -14.46312 -14.00341 -13.93438 -13.79608 -13.56761 -13.25126 -12.90562 -12.63072 -12.19256 -11.96882 -11.83740 -11.71401 -11.34567 -11.22600 -11.03170 -10.82191 -10.48082 -10.23392 -10.09415 -10.03298 -9.94027 -9.84854 -9.73073 -9.67554 -9.30921 -8.72689 -8.45412 -6.85303 -5.66136 -3.09880 1.70705 2.24707 2.83754 3.06350 3.37544 3.42587 3.45336 3.46075 4.31307 4.44311 4.45745 4.80772 4.91172 4.93034 5.00022 5.18097 5.23065 5.33911 5.48984 5.57134 5.73499 5.81792 5.96242 6.04411 6.11587 6.18469 6.25350 6.34214 6.44081 6.51834 6.54054 6.63845 6.66100 6.77278 6.91430 7.43745 7.59395 7.79146 7.89930 8.14602 8.35232 8.52572 9.18661 9.80305 10.43798 11.36412 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005277 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.956520 B = 5304.641127 C = 6827.214301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.087 0.913 17 N -0.698 5.698 18 C 0.500 3.500 19 O -0.516 6.516 20 C 0.109 3.891 21 N -0.364 5.364 22 C 0.247 3.753 23 N -0.548 5.548 24 C 0.185 3.815 25 N -0.277 5.277 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.253 0.747 35 H 0.020 0.980 36 H 0.113 0.887 37 H 0.397 0.603 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.217 0.783 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 1.494 3.657 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.349 5.349 18 C 0.283 3.717 19 O -0.390 6.390 20 C -0.017 4.017 21 N -0.155 5.155 22 C -0.050 4.050 23 N -0.276 5.276 24 C -0.118 4.118 25 N -0.104 5.104 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.131 0.869 37 H 0.232 0.768 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.233 0.767 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.900 1.673 4.247 14.630 hybrid contribution 0.198 -0.674 -1.160 1.356 sum -13.702 0.999 3.086 14.081 Atomic orbital electron populations 1.21706 0.94601 1.01145 1.01262 1.21858 0.94847 0.95774 0.96415 1.21685 1.01971 0.94090 1.00882 1.21408 0.90304 0.92947 0.93632 1.44475 1.30689 1.50266 1.07314 1.19058 1.06510 1.17117 0.92895 0.90507 1.24798 0.98710 1.00553 0.96318 1.69802 1.29878 1.45873 1.10767 0.86054 0.80229 0.80476 0.79031 1.20579 1.21738 1.21792 1.22312 0.89139 1.01418 0.85121 1.22535 0.93223 0.85871 0.96324 0.89452 1.45678 1.46049 1.33192 1.09981 1.20162 0.83532 0.84574 0.83426 1.90781 1.41816 1.60095 1.46333 1.21622 1.02156 0.99133 0.78807 1.49988 1.05198 1.50734 1.09616 1.25991 0.96993 0.97398 0.84587 1.70484 1.08407 1.24182 1.24506 1.26012 0.91935 0.99478 0.94410 1.78344 1.03954 1.20424 1.07640 0.92908 0.92720 0.92941 0.91738 0.92664 0.93096 0.96073 0.95870 0.93643 0.96175 0.86916 0.76827 0.86291 0.85602 0.76688 0.76877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.07 37.16 0.30 -1.22 16 2 C -0.09 -1.36 0.80 -152.67 -0.12 -1.49 16 3 C -0.13 -1.87 8.41 37.16 0.31 -1.56 16 4 C 0.14 2.72 6.41 -3.06 -0.02 2.70 16 5 N -0.60 -14.51 3.39 -170.07 -0.58 -15.09 16 6 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 10 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.15 3.49 5.27 -2.53 -0.01 3.47 16 15 C 0.13 2.30 2.67 -65.78 -0.18 2.12 16 16 H 0.09 1.68 7.44 -51.93 -0.39 1.29 16 17 N -0.70 -10.91 4.55 -51.73 -0.24 -11.15 16 18 C 0.50 8.17 7.87 -10.98 -0.09 8.08 16 19 O -0.52 -10.98 15.38 5.56 0.09 -10.89 16 20 C 0.11 1.24 7.03 -5.19 -0.04 1.20 16 21 N -0.36 -5.04 3.41 -63.81 -0.22 -5.26 16 22 C 0.25 2.82 12.63 -90.66 -1.14 1.67 16 23 N -0.55 -7.62 11.19 -15.83 -0.18 -7.80 16 24 C 0.18 2.70 13.03 -91.81 -1.20 1.50 16 25 N -0.28 -4.80 11.82 29.29 0.35 -4.46 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 29 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.39 7.76 -51.93 -0.40 -0.02 16 33 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.02 0.53 7.80 -51.93 -0.41 0.13 16 36 H 0.11 3.18 5.87 -51.93 -0.31 2.88 16 37 H 0.40 5.24 7.18 -40.82 -0.29 4.95 16 38 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.13 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.22 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.21 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -36.63 337.65 -8.44 -45.07 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.86 Total: 4.03 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -2.43 Total: 9.89 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.30 Total: -70.14 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.63 -8.44 -45.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977555680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.976 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds