Wall clock time and date at job start Tue Mar 31 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.77885 * 2 1 4 4 C 1.54326 * 110.71960 * 236.76292 * 2 1 3 5 5 N 1.47020 * 107.27002 * 219.44526 * 4 2 1 6 6 C 1.36940 * 125.64793 * 178.98706 * 5 4 2 7 7 H 1.07991 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99886 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00309 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00012 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47044 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47033 * 120.00126 * 10 8 6 13 13 H 1.48500 * 109.46861 * 240.00562 * 10 8 6 14 14 C 1.47423 * 108.70434 * 358.93439 * 5 4 2 15 15 C 1.54915 * 104.83122 * 24.13584 * 14 5 4 16 16 H 1.08992 * 111.03715 * 204.90129 * 15 14 5 17 17 N 1.46494 * 111.00555 * 81.05979 * 15 14 5 18 18 C 1.34780 * 120.00098 * 92.80912 * 17 15 14 19 19 O 1.21273 * 119.99743 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00004 * 179.97438 * 18 17 15 21 21 N 1.46505 * 109.46931 * 179.97438 * 20 18 17 22 22 C 1.34428 * 126.82137 * 125.02213 * 21 20 18 23 23 N 1.30829 * 108.07758 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.82920 * 0.02562 * 23 22 21 25 25 N 1.30714 * 108.94945 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47268 * 296.75846 * 1 2 3 27 27 H 1.09001 * 109.47525 * 56.76493 * 1 2 3 28 28 H 1.09003 * 109.47415 * 176.75945 * 1 2 3 29 29 H 1.08993 * 109.47036 * 183.24230 * 3 2 1 30 30 H 1.09002 * 109.47011 * 303.24099 * 3 2 1 31 31 H 1.08992 * 109.47022 * 63.23723 * 3 2 1 32 32 H 1.08999 * 109.88045 * 338.85738 * 4 2 1 33 33 H 1.08996 * 109.88497 * 100.02390 * 4 2 1 34 34 H 0.96992 * 120.00127 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.37114 * 265.29466 * 14 5 4 36 36 H 1.09002 * 110.36293 * 142.96531 * 14 5 4 37 37 H 0.97002 * 120.00345 * 272.80429 * 17 15 14 38 38 H 1.09005 * 109.46920 * 60.00018 * 20 18 17 39 39 H 1.08994 * 109.47333 * 299.99855 * 20 18 17 40 40 H 1.08003 * 125.95916 * 0.03061 * 22 21 20 41 41 H 1.08002 * 125.53210 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2444 -1.5507 -0.7391 6 6 4.0044 -2.3968 -1.5019 7 1 3.7613 -2.5505 -2.5428 8 6 5.0871 -3.0568 -0.9372 9 7 5.3831 -2.8699 0.3316 10 14 6.1233 -4.2115 -1.9776 11 1 5.5856 -4.2480 -3.3614 12 1 7.5270 -3.7278 -2.0051 13 1 6.0812 -5.5762 -1.3936 14 6 3.4633 -1.2497 0.6874 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2272 -1.9488 1.5144 18 6 1.2025 -2.4618 2.7605 19 8 1.8859 -1.9689 3.6328 20 6 0.3259 -3.6479 3.0699 21 7 0.4770 -4.0120 4.4809 22 6 -0.5042 -4.1300 5.3921 23 7 0.0394 -4.4706 6.5323 24 6 1.3597 -4.5784 6.3893 25 7 1.6759 -4.3073 5.1503 26 1 -0.3634 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8596 28 1 -0.3634 -1.0260 -0.0581 29 1 3.1609 1.4062 -0.0581 30 1 1.6750 1.9700 -0.8595 31 1 1.7690 1.9343 0.9175 32 1 1.3129 -1.4758 -1.5776 33 1 2.3740 -0.1024 -1.9978 34 1 6.1394 -3.3313 0.7262 35 1 4.1932 -0.4478 0.7984 36 1 3.7960 -2.1426 1.2168 37 1 0.6808 -2.3433 0.8167 38 1 0.6203 -4.4904 2.4440 39 1 -0.7147 -3.3927 2.8697 40 1 -1.5577 -3.9722 5.2137 41 1 2.0558 -4.8464 7.1703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977555680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:14 Heat of formation + Delta-G solvation = 66.485293 kcal Electronic energy + Delta-G solvation = -24288.675595 eV Core-core repulsion = 20819.843583 eV Total energy + Delta-G solvation = -3468.832013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.96568 -41.16481 -39.43550 -35.68160 -34.95592 -34.49900 -32.60867 -32.13877 -30.29785 -28.85041 -27.85148 -27.33387 -25.09995 -23.39785 -22.84507 -22.20761 -21.35458 -20.13956 -18.72840 -18.37197 -18.27463 -17.20828 -16.81332 -16.44696 -16.07585 -15.69566 -15.60016 -15.25047 -14.99138 -14.80085 -14.60261 -14.21956 -13.79595 -13.66704 -13.56934 -13.05105 -13.00915 -12.86606 -12.73996 -12.63914 -12.55536 -12.06111 -11.79852 -11.76295 -11.45659 -11.35557 -11.27590 -10.97757 -10.80864 -10.74803 -10.47036 -9.96159 -8.85729 -7.76907 -5.22147 0.74697 1.35302 1.43389 1.44174 1.54575 1.60013 2.05483 2.27240 2.47570 3.33311 3.55050 3.56310 3.61294 3.67983 3.78152 3.97733 4.08219 4.10581 4.17069 4.43109 4.45137 4.52615 4.74087 4.84152 4.90202 4.94513 5.04851 5.11938 5.21493 5.26185 5.30631 5.35437 5.49007 5.50986 5.55032 5.68005 5.82320 5.94171 6.29848 6.60136 7.07995 7.15393 7.30157 7.78811 8.41907 9.23396 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005277 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.956520 B = 5304.641127 C = 6827.214301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.229 4.229 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.950 5.950 10 Si 0.974 3.026 11 H -0.260 1.260 12 H -0.299 1.299 13 H -0.296 1.296 14 C 0.154 3.846 15 C 0.140 3.860 16 H 0.075 0.925 17 N -0.688 5.688 18 C 0.493 3.507 19 O -0.573 6.573 20 C 0.115 3.885 21 N -0.375 5.375 22 C 0.266 3.734 23 N -0.574 5.574 24 C 0.183 3.817 25 N -0.345 5.345 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.022 0.978 34 H 0.241 0.759 35 H -0.022 1.022 36 H 0.066 0.934 37 H 0.413 0.587 38 H 0.128 0.872 39 H 0.195 0.805 40 H 0.275 0.725 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.265 1.495 2.221 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.186 4.186 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.358 4.358 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.804 3.196 11 H -0.184 1.184 12 H -0.226 1.226 13 H -0.224 1.224 14 C 0.027 3.973 15 C 0.034 3.966 16 H 0.093 0.907 17 N -0.339 5.339 18 C 0.279 3.721 19 O -0.452 6.452 20 C -0.010 4.010 21 N -0.167 5.167 22 C -0.030 4.030 23 N -0.302 5.302 24 C -0.120 4.120 25 N -0.172 5.172 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.050 0.950 35 H -0.004 1.004 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.146 0.854 39 H 0.212 0.788 40 H 0.290 0.710 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.070 1.675 2.747 18.354 hybrid contribution 1.455 -0.617 -0.738 1.745 sum -16.615 1.058 2.009 16.769 Atomic orbital electron populations 1.21681 0.90470 1.02851 1.02958 1.21839 0.97876 0.95029 0.92699 1.21700 0.99808 0.94135 1.02922 1.21673 0.88869 0.93121 0.95029 1.44701 1.31872 1.50412 1.07338 1.19487 1.06355 1.16452 0.93505 0.89527 1.25610 1.00462 1.02752 0.97309 1.70131 1.30080 1.47210 1.12587 0.85055 0.78093 0.77982 0.78500 1.18366 1.22645 1.22355 1.21928 0.91911 0.97970 0.85453 1.22078 0.90885 0.86865 0.96796 0.90738 1.45537 1.45300 1.32509 1.10595 1.21137 0.83187 0.85177 0.82625 1.90763 1.44287 1.62084 1.48018 1.21917 1.04542 0.96578 0.77930 1.50101 1.04719 1.51223 1.10612 1.27118 0.98599 0.94175 0.83078 1.70511 1.08034 1.25608 1.26071 1.26452 0.92887 0.98428 0.94255 1.78251 1.06976 1.22858 1.09149 0.91586 0.90632 0.91334 0.95230 0.90113 0.91472 0.93926 0.95948 0.94964 1.00425 0.91589 0.74981 0.85439 0.78840 0.70992 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.07 71.98 0.58 -1.71 16 2 C -0.07 -2.13 0.80 -50.99 -0.04 -2.17 16 3 C -0.13 -3.54 8.41 71.98 0.61 -2.94 16 4 C 0.14 4.99 6.41 86.73 0.56 5.54 16 5 N -0.62 -30.22 3.39 -691.99 -2.35 -32.57 16 6 C -0.23 -12.45 10.27 84.03 0.86 -11.59 16 7 H 0.09 4.45 7.83 -2.92 -0.02 4.42 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 9 N -0.95 -59.15 10.09 21.65 0.22 -58.94 16 10 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 14 C 0.15 7.77 5.27 86.86 0.46 8.23 16 15 C 0.14 5.15 2.67 46.39 0.12 5.28 16 16 H 0.07 2.95 7.44 -2.39 -0.02 2.93 16 17 N -0.69 -20.53 4.55 -435.98 -1.98 -22.51 16 18 C 0.49 15.69 7.87 87.66 0.69 16.38 16 19 O -0.57 -25.13 15.38 -3.01 -0.05 -25.17 16 20 C 0.12 2.27 7.03 85.63 0.60 2.87 16 21 N -0.38 -9.71 3.41 -355.80 -1.21 -10.93 16 22 C 0.27 5.21 12.63 180.36 2.28 7.49 16 23 N -0.57 -15.12 11.19 -204.00 -2.28 -17.40 16 24 C 0.18 5.38 13.03 180.77 2.36 7.73 16 25 N -0.35 -12.17 11.82 -61.24 -0.72 -12.90 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.08 6.48 -2.39 -0.02 1.07 16 29 H 0.03 1.00 7.57 -2.39 -0.02 0.99 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.40 7.76 -2.39 -0.02 1.38 16 33 H 0.02 0.83 7.84 -2.39 -0.02 0.81 16 34 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 35 H -0.02 -1.26 7.80 -2.39 -0.02 -1.28 16 36 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 37 H 0.41 9.59 7.18 -92.71 -0.67 8.93 16 38 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.19 1.07 8.09 -2.39 -0.02 1.05 16 40 H 0.27 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.23 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -88.67 337.65 3.56 -85.11 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.38 Total: 15.41 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 9.54 Total: 31.64 kcal Atomic # 7 Polarization: -146.91 SS G_CDS: -8.33 Total: -155.24 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -88.67 3.56 -85.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977555680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.593 kcal (2) G-P(sol) polarization free energy of solvation -88.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds