Wall clock time and date at job start Tue Mar 31 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.52997 * 109.47165 * 59.99819 * 12 10 9 14 14 C 1.53004 * 109.47119 * 60.00284 * 13 12 10 15 15 C 1.52998 * 109.46870 * 299.99896 * 14 13 12 16 16 H 1.08998 * 109.47555 * 300.00080 * 15 14 13 17 17 N 1.46505 * 109.46914 * 179.97438 * 15 14 13 18 18 C 1.34770 * 119.99809 * 85.00401 * 17 15 14 19 19 O 1.21283 * 120.00323 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00069 * 180.02562 * 18 17 15 21 21 N 1.46501 * 109.47353 * 179.97438 * 20 18 17 22 22 N 1.28595 * 124.62191 * 269.69793 * 21 20 18 23 23 C 1.31374 * 108.71973 * 179.82991 * 22 21 20 24 24 C 1.39674 * 105.90278 * 0.41018 * 23 22 21 25 25 N 1.28604 * 124.61417 * 89.99784 * 21 20 18 26 26 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 30 30 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 31 31 H 1.09000 * 109.47117 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.47227 * 299.99980 * 13 12 10 33 33 H 1.08998 * 109.47097 * 60.00257 * 14 13 12 34 34 H 1.08997 * 109.46784 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99949 * 265.00581 * 17 15 14 36 36 H 1.09004 * 109.47236 * 299.99907 * 20 18 17 37 37 H 1.08996 * 109.47506 * 59.99464 * 20 18 17 38 38 H 1.08007 * 127.05189 * 180.16160 * 23 22 21 39 39 H 1.08000 * 127.05286 * 179.72052 * 24 23 22 40 40 H 1.09000 * 109.46894 * 59.99595 * 26 10 9 41 41 H 1.08998 * 109.47683 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 1.1420 -4.1857 2.2619 14 6 0.2652 -5.2808 1.6512 15 6 -0.0977 -4.9013 0.2141 16 1 -0.6427 -3.9573 0.2141 17 7 -0.9368 -5.9502 -0.3708 18 6 -2.2692 -5.9384 -0.1684 19 8 -2.7735 -5.0598 0.4985 20 6 -3.1323 -7.0175 -0.7696 21 7 -4.5319 -6.7826 -0.4061 22 7 -5.1038 -7.2573 0.6433 23 6 -6.3528 -6.8504 0.6633 24 6 -6.5212 -6.0751 -0.4863 25 7 -5.3574 -6.0780 -1.0960 26 6 1.1812 -4.7519 -0.6123 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.9654 -4.9805 1.4355 30 1 3.0455 -3.2562 1.8706 31 1 1.4006 -4.4557 3.2858 32 1 0.5971 -3.2418 2.2620 33 1 0.8101 -6.2248 1.6512 34 1 -0.6461 -5.3869 2.2397 35 1 -0.5334 -6.6531 -0.9038 36 1 -3.0307 -7.0016 -1.8547 37 1 -2.8167 -7.9891 -0.3894 38 1 -7.0979 -7.0732 1.4127 39 1 -7.4233 -5.5761 -0.8082 40 1 0.9227 -4.4816 -1.6361 41 1 1.7263 -5.6958 -0.6127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981115669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:57 Heat of formation + Delta-G solvation = 83.104162 kcal Electronic energy + Delta-G solvation = -23741.589737 eV Core-core repulsion = 20273.478372 eV Total energy + Delta-G solvation = -3468.111365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.62039 -40.07882 -38.19530 -34.75554 -33.91789 -33.29943 -32.48696 -30.97045 -29.88811 -28.18343 -27.62364 -23.52912 -22.97496 -22.85696 -22.05273 -21.48746 -20.56161 -18.97525 -17.80491 -17.69919 -17.22613 -16.06817 -15.85118 -15.78596 -14.87587 -14.79579 -14.53643 -14.35355 -13.92590 -13.84082 -13.58840 -13.41625 -12.86746 -12.37714 -12.17888 -11.76211 -11.72682 -11.51446 -11.02011 -10.87982 -10.75991 -10.67368 -10.44767 -10.38995 -10.22067 -10.11544 -9.95863 -9.78762 -9.34078 -9.12777 -9.06188 -8.83199 -7.00930 -6.05937 -3.06711 1.63184 2.03599 2.39823 2.43392 3.07201 3.53098 3.58184 3.72156 4.02391 4.38488 4.56978 4.68184 4.69085 4.95754 4.97491 5.08633 5.25181 5.34720 5.53121 5.57430 5.63283 5.71074 5.77166 5.88922 5.96382 5.98233 6.05752 6.08374 6.20409 6.31300 6.43628 6.46833 6.54009 6.67764 6.74030 6.90814 6.98934 7.34211 7.84057 8.04792 8.23375 8.78617 9.25454 10.11810 10.26323 11.41781 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.003744 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.787222 B = 7477.548044 C = 8401.912921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.733 5.733 10 C 0.185 3.815 11 H 0.053 0.947 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.121 4.121 15 C 0.148 3.852 16 H 0.094 0.906 17 N -0.718 5.718 18 C 0.497 3.503 19 O -0.512 6.512 20 C 0.123 3.877 21 N -0.144 5.144 22 N -0.283 5.283 23 C -0.026 4.026 24 C -0.025 4.025 25 N -0.279 5.279 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.367 0.633 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.068 0.932 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -19.411 -1.571 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.224 1.224 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.377 5.377 10 C 0.074 3.926 11 H 0.071 0.929 12 C -0.176 4.176 13 C -0.147 4.147 14 C -0.159 4.159 15 C 0.044 3.956 16 H 0.112 0.888 17 N -0.370 5.370 18 C 0.279 3.721 19 O -0.386 6.386 20 C -0.002 4.002 21 N -0.044 5.044 22 N -0.123 5.123 23 C -0.209 4.209 24 C -0.208 4.208 25 N -0.120 5.120 26 C -0.168 4.168 27 H 0.067 0.933 28 H 0.201 0.799 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.215 0.785 39 H 0.215 0.785 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.506 -17.294 -1.461 17.931 hybrid contribution -0.817 -1.837 0.109 2.014 sum -5.323 -19.132 -1.351 19.904 Atomic orbital electron populations 1.70842 1.06050 1.28542 1.53301 1.25741 0.97028 1.00955 1.00509 0.83214 0.73832 0.75489 0.76197 1.22385 1.22212 1.21452 1.20043 0.91940 0.85782 1.48572 0.91756 1.42517 1.04762 1.00635 1.89780 1.20087 0.93896 0.85417 0.93159 0.92918 1.22171 0.96858 0.99593 0.98935 1.21348 0.96714 0.99001 0.97661 1.21852 0.99726 0.98929 0.95429 1.21095 0.91024 0.90854 0.92597 0.88765 1.46039 1.06133 1.30510 1.54332 1.20429 0.83249 0.86691 0.81720 1.90846 1.73027 1.36491 1.38194 1.21698 0.74298 1.00533 1.03671 1.47290 1.10038 1.33497 1.13593 1.74017 1.09183 1.21085 1.08060 1.24773 0.93632 1.01576 1.00879 1.24800 0.96891 1.03662 0.95443 1.74076 1.00947 1.13210 1.23721 1.22110 0.95302 0.99851 0.99517 0.93319 0.79859 0.93705 0.91874 0.93025 0.90763 0.92456 0.92290 0.76776 0.84574 0.84654 0.78546 0.78507 0.91359 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.84 13.70 55.49 0.76 -29.08 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 26.33 29.92 -169.99 -5.09 21.24 16 4 H -0.30 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.30 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.33 -9.26 9.93 -15.06 -0.15 -9.41 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.73 -17.96 4.27 -53.43 -0.23 -18.19 16 10 C 0.19 3.52 3.10 -67.94 -0.21 3.31 16 11 H 0.05 1.03 8.08 -51.92 -0.42 0.61 16 12 C -0.14 -2.35 5.61 -26.73 -0.15 -2.50 16 13 C -0.11 -1.89 5.77 -26.73 -0.15 -2.05 16 14 C -0.12 -1.84 5.49 -26.73 -0.15 -1.99 16 15 C 0.15 2.30 2.28 -67.93 -0.16 2.15 16 16 H 0.09 1.92 5.94 -51.93 -0.31 1.61 16 17 N -0.72 -8.51 5.08 -53.80 -0.27 -8.79 16 18 C 0.50 6.93 7.86 -10.99 -0.09 6.85 16 19 O -0.51 -10.17 16.09 5.55 0.09 -10.08 16 20 C 0.12 1.21 7.02 -5.19 -0.04 1.17 16 21 N -0.14 -1.95 3.44 -11.66 -0.04 -1.99 16 22 N -0.28 -3.86 12.05 30.67 0.37 -3.49 16 23 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 24 C -0.02 -0.28 12.20 -17.21 -0.21 -0.49 16 25 N -0.28 -3.96 12.05 30.68 0.37 -3.59 16 26 C -0.13 -1.93 5.08 -26.73 -0.14 -2.07 16 27 H 0.26 8.10 6.77 -40.82 -0.28 7.83 16 28 H 0.37 9.54 4.89 -40.82 -0.20 9.34 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.57 7.60 -51.93 -0.39 1.18 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.01 8.60 -40.82 -0.35 2.66 16 36 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.20 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -38.23 339.06 -6.48 -44.70 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.81 Total: 11.07 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.74 Total: -6.92 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.96 Total: -65.13 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.09 Total: 21.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.23 -6.48 -44.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981115669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.808 kcal (2) G-P(sol) polarization free energy of solvation -38.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds