Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.52997 * 109.47165 * 59.99819 * 12 10 9 14 14 C 1.53004 * 109.47119 * 60.00284 * 13 12 10 15 15 C 1.52998 * 109.46870 * 299.99896 * 14 13 12 16 16 H 1.08998 * 109.47555 * 300.00080 * 15 14 13 17 17 N 1.46505 * 109.46914 * 179.97438 * 15 14 13 18 18 C 1.34770 * 119.99809 * 85.00401 * 17 15 14 19 19 O 1.21283 * 120.00323 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00069 * 180.02562 * 18 17 15 21 21 N 1.46501 * 109.47353 * 179.97438 * 20 18 17 22 22 N 1.28595 * 124.62191 * 269.69793 * 21 20 18 23 23 C 1.31374 * 108.71973 * 179.82991 * 22 21 20 24 24 C 1.39674 * 105.90278 * 0.41018 * 23 22 21 25 25 N 1.28604 * 124.61417 * 89.99784 * 21 20 18 26 26 C 1.53002 * 109.47363 * 204.99585 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47555 * 179.97438 * 12 10 9 30 30 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 31 31 H 1.09000 * 109.47117 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.47227 * 299.99980 * 13 12 10 33 33 H 1.08998 * 109.47097 * 60.00257 * 14 13 12 34 34 H 1.08997 * 109.46784 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99949 * 265.00581 * 17 15 14 36 36 H 1.09004 * 109.47236 * 299.99907 * 20 18 17 37 37 H 1.08996 * 109.47506 * 59.99464 * 20 18 17 38 38 H 1.08007 * 127.05189 * 180.16160 * 23 22 21 39 39 H 1.08000 * 127.05286 * 179.72052 * 24 23 22 40 40 H 1.09000 * 109.46894 * 59.99595 * 26 10 9 41 41 H 1.08998 * 109.47683 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 1.1420 -4.1857 2.2619 14 6 0.2652 -5.2808 1.6512 15 6 -0.0977 -4.9013 0.2141 16 1 -0.6427 -3.9573 0.2141 17 7 -0.9368 -5.9502 -0.3708 18 6 -2.2692 -5.9384 -0.1684 19 8 -2.7735 -5.0598 0.4985 20 6 -3.1323 -7.0175 -0.7696 21 7 -4.5319 -6.7826 -0.4061 22 7 -5.1038 -7.2573 0.6433 23 6 -6.3528 -6.8504 0.6633 24 6 -6.5212 -6.0751 -0.4863 25 7 -5.3574 -6.0780 -1.0960 26 6 1.1812 -4.7519 -0.6123 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 2.9654 -4.9805 1.4355 30 1 3.0455 -3.2562 1.8706 31 1 1.4006 -4.4557 3.2858 32 1 0.5971 -3.2418 2.2620 33 1 0.8101 -6.2248 1.6512 34 1 -0.6461 -5.3869 2.2397 35 1 -0.5334 -6.6531 -0.9038 36 1 -3.0307 -7.0016 -1.8547 37 1 -2.8167 -7.9891 -0.3894 38 1 -7.0979 -7.0732 1.4127 39 1 -7.4233 -5.5761 -0.8082 40 1 0.9227 -4.4816 -1.6361 41 1 1.7263 -5.6958 -0.6127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981115669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = 52.909241 kcal Electronic energy + Delta-G solvation = -23742.899087 eV Core-core repulsion = 20273.478372 eV Total energy + Delta-G solvation = -3469.420715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.50019 -41.27776 -39.58456 -36.33541 -35.06865 -34.69982 -33.40805 -32.70140 -31.10796 -29.73269 -28.76903 -25.62053 -24.02227 -23.83976 -23.46326 -22.62078 -21.67299 -20.42605 -19.33947 -18.81676 -18.57041 -17.42371 -16.91007 -16.73342 -16.41345 -15.94253 -15.75788 -15.72035 -15.33041 -15.29918 -15.14849 -14.76331 -13.99777 -13.61119 -13.39570 -13.34089 -12.99522 -12.69718 -12.60008 -12.57428 -12.27428 -11.90318 -11.82356 -11.75749 -11.66609 -11.46049 -11.34739 -11.31269 -11.09090 -10.87257 -10.27094 -10.20387 -9.09420 -8.38160 -5.30833 0.70755 1.25124 1.35114 1.54873 1.59477 1.66335 1.79813 2.07021 2.71320 3.28969 3.40879 3.44658 3.63394 3.79339 3.87367 3.94749 4.00750 4.04462 4.15181 4.23674 4.32685 4.45241 4.56143 4.57644 4.64462 4.69671 4.88562 4.99363 5.03872 5.05997 5.18639 5.29714 5.32080 5.33074 5.47677 5.52515 5.64772 5.65016 6.37700 6.46745 7.08212 7.10783 7.33992 8.01808 8.14531 9.12844 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.003744 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.787222 B = 7477.548044 C = 8401.912921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.113 4.113 3 Si 1.129 2.871 4 H -0.288 1.288 5 H -0.268 1.268 6 H -0.297 1.297 7 C -0.320 4.320 8 H 0.070 0.930 9 N -0.747 5.747 10 C 0.171 3.829 11 H 0.053 0.947 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.109 4.109 15 C 0.155 3.845 16 H 0.035 0.965 17 N -0.697 5.697 18 C 0.493 3.507 19 O -0.581 6.581 20 C 0.124 3.876 21 N -0.158 5.158 22 N -0.310 5.310 23 C -0.026 4.026 24 C -0.028 4.028 25 N -0.316 5.316 26 C -0.115 4.115 27 H 0.237 0.763 28 H 0.355 0.645 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.019 0.981 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.425 0.575 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.232 0.768 39 H 0.229 0.771 40 H 0.061 0.939 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -22.378 -2.115 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.303 4.303 3 Si 0.954 3.046 4 H -0.215 1.215 5 H -0.193 1.193 6 H -0.224 1.224 7 C -0.452 4.452 8 H 0.088 0.912 9 N -0.390 5.390 10 C 0.063 3.937 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.147 4.147 15 C 0.049 3.951 16 H 0.053 0.947 17 N -0.350 5.350 18 C 0.278 3.722 19 O -0.460 6.460 20 C 0.001 3.999 21 N -0.058 5.058 22 N -0.150 5.150 23 C -0.209 4.209 24 C -0.211 4.211 25 N -0.156 5.156 26 C -0.153 4.153 27 H 0.048 0.952 28 H 0.188 0.812 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.264 0.736 36 H 0.186 0.814 37 H 0.194 0.806 38 H 0.249 0.751 39 H 0.246 0.754 40 H 0.080 0.920 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.044 -20.366 -2.039 20.693 hybrid contribution -1.239 -0.990 0.311 1.616 sum -4.283 -21.356 -1.728 21.850 Atomic orbital electron populations 1.70977 1.07460 1.27447 1.57094 1.27178 0.96970 1.04873 1.01255 0.82609 0.73689 0.71631 0.76660 1.21547 1.19257 1.22375 1.20434 0.92341 0.87092 1.45315 0.91184 1.42784 1.04459 1.01973 1.89795 1.20457 0.94161 0.84474 0.94637 0.92895 1.22047 0.96533 1.00951 0.97002 1.21290 0.96663 0.97339 0.99199 1.21747 0.98869 0.99729 0.94388 1.20728 0.91090 0.89632 0.93608 0.94681 1.45721 1.05463 1.30018 1.53797 1.21232 0.83796 0.86629 0.80552 1.90824 1.74308 1.39433 1.41413 1.22039 0.72356 1.00195 1.05352 1.47603 1.10879 1.33733 1.13620 1.73969 1.10367 1.22119 1.08580 1.25455 0.93557 1.00565 1.01297 1.25454 0.97223 1.03153 0.95279 1.74027 1.02207 1.14297 1.25117 1.21977 0.94496 1.00554 0.98281 0.95246 0.81244 0.89068 0.94444 0.91260 0.96171 0.88202 0.94256 0.73629 0.81382 0.80607 0.75124 0.75448 0.91991 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.26 13.70 21.65 0.30 -64.96 16 2 C -0.11 -6.78 5.50 84.86 0.47 -6.31 16 3 Si 1.13 53.98 29.92 68.60 2.05 56.03 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.32 -18.22 9.93 84.03 0.83 -17.39 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.75 -37.85 4.27 -322.95 -1.38 -39.23 16 10 C 0.17 6.34 3.10 44.99 0.14 6.48 16 11 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 12 C -0.13 -4.14 5.61 30.59 0.17 -3.97 16 13 C -0.11 -3.68 5.77 30.59 0.18 -3.51 16 14 C -0.11 -3.18 5.49 30.59 0.17 -3.01 16 15 C 0.15 4.74 2.28 44.99 0.10 4.84 16 16 H 0.03 1.53 5.94 -2.39 -0.01 1.52 16 17 N -0.70 -15.23 5.08 -442.53 -2.25 -17.48 16 18 C 0.49 13.55 7.86 87.66 0.69 14.24 16 19 O -0.58 -24.23 16.09 -3.04 -0.05 -24.28 16 20 C 0.12 2.20 7.02 85.63 0.60 2.80 16 21 N -0.16 -4.15 3.44 -190.81 -0.66 -4.81 16 22 N -0.31 -8.18 12.05 -56.86 -0.69 -8.87 16 23 C -0.03 -0.54 12.20 85.11 1.04 0.49 16 24 C -0.03 -0.62 12.20 85.11 1.04 0.42 16 25 N -0.32 -8.86 12.05 -56.86 -0.69 -9.55 16 26 C -0.11 -3.16 5.08 30.60 0.16 -3.01 16 27 H 0.24 16.14 6.77 -92.71 -0.63 15.51 16 28 H 0.35 19.73 4.89 -92.71 -0.45 19.28 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.02 0.89 7.60 -2.39 -0.02 0.87 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.42 4.72 8.60 -92.71 -0.80 3.92 16 36 H 0.17 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.18 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.23 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -91.46 339.06 2.17 -89.29 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.05 Total: 31.77 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.58 Total: -7.91 kcal Atomic # 7 Polarization: -139.55 SS G_CDS: -5.36 Total: -144.90 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 2.05 Total: 56.03 kcal Total: -91.46 2.17 -89.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981115669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.197 kcal (2) G-P(sol) polarization free energy of solvation -91.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds