Wall clock time and date at job start Tue Mar 31 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30835 * 125.95792 * 2 1 4 4 C 1.33240 * 109.83045 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.53026 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47153 * 89.99266 * 5 4 3 7 7 O 1.21280 * 119.99787 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99676 * 179.72250 * 6 5 4 9 9 C 1.48216 * 119.96965 * 180.02562 * 8 6 5 10 10 C 1.47606 * 110.03660 * 102.55196 * 9 8 6 11 11 C 1.53799 * 111.84063 * 58.43944 * 10 9 8 12 12 N 1.43457 * 107.95972 * 281.53997 * 11 10 9 13 13 C 1.36937 * 118.93890 * 273.63021 * 12 11 10 14 14 H 1.08003 * 120.00206 * 24.94557 * 13 12 11 15 15 C 1.38810 * 120.00132 * 204.93789 * 13 12 11 16 16 N 1.31620 * 119.99973 * 14.62423 * 15 13 12 17 17 Si 1.86801 * 120.00180 * 194.61829 * 15 13 12 18 18 H 1.48497 * 109.47319 * 90.00431 * 17 15 13 19 19 H 1.48504 * 109.47213 * 210.00481 * 17 15 13 20 20 H 1.48504 * 109.47061 * 330.00319 * 17 15 13 21 21 C 1.48861 * 122.12235 * 93.61059 * 12 11 10 22 22 C 1.43618 * 119.96942 * 0.28317 * 8 6 5 23 23 N 1.30716 * 108.94747 * 0.25960 * 4 3 2 24 24 N 1.34424 * 125.96891 * 180.02562 * 2 1 3 25 25 H 0.97011 * 126.81870 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47181 * 89.98009 * 1 2 3 27 27 H 1.09000 * 109.46946 * 209.97551 * 1 2 3 28 28 H 1.09000 * 109.47883 * 329.97508 * 1 2 3 29 29 H 1.09001 * 109.46452 * 329.99490 * 5 4 3 30 30 H 1.08996 * 109.47200 * 209.99667 * 5 4 3 31 31 H 1.09005 * 109.32715 * 222.78574 * 9 8 6 32 32 H 1.09000 * 109.32422 * 342.25126 * 9 8 6 33 33 H 1.08992 * 109.10607 * 297.76290 * 10 9 8 34 34 H 1.09007 * 108.83956 * 178.93324 * 10 9 8 35 35 H 1.09004 * 109.76204 * 161.92190 * 11 10 9 36 36 H 1.09007 * 109.80901 * 41.18202 * 11 10 9 37 37 H 0.97000 * 120.00224 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47677 * 200.65768 * 21 12 11 39 39 H 1.09000 * 109.48731 * 80.63448 * 21 12 11 40 40 H 1.09003 * 108.87912 * 31.42065 * 22 8 6 41 41 H 1.09005 * 108.87352 * 149.85333 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6889 -0.0006 5 6 4.7372 1.6238 -0.0002 6 6 5.1314 1.9346 1.4208 7 8 4.5137 1.4448 2.3424 8 7 6.1742 2.7520 1.6673 9 6 6.5617 3.0569 3.0650 10 6 7.7526 2.2707 3.4425 11 6 8.9446 2.5559 2.5133 12 7 8.7397 1.8272 1.2947 13 6 9.1636 0.5272 1.2208 14 1 9.2632 -0.0604 2.1215 15 6 9.4652 -0.0355 -0.0118 16 7 9.6252 0.7361 -1.0660 17 14 9.6442 -1.8878 -0.1743 18 1 8.3252 -2.4857 -0.5030 19 1 10.6121 -2.1986 -1.2568 20 1 10.1377 -2.4518 1.1078 21 6 8.0808 2.4385 0.1081 22 6 6.9054 3.3314 0.5753 23 7 3.6195 -0.6166 -0.0065 24 7 2.2965 -1.0879 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3635 0.8897 0.5142 29 1 4.4698 2.5475 -0.5134 30 1 5.5741 1.1516 -0.5145 31 1 6.7855 4.1200 3.1537 32 1 5.7354 2.8081 3.7309 33 1 7.5099 1.2093 3.3930 34 1 8.0316 2.5236 4.4655 35 1 9.8690 2.2273 2.9884 36 1 8.9993 3.6234 2.2997 37 1 9.8363 0.3429 -1.9273 38 1 7.7024 1.6509 -0.5435 39 1 8.8040 3.0451 -0.4371 40 1 6.2253 3.4851 -0.2625 41 1 7.2999 4.2981 0.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981116044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:44 Heat of formation + Delta-G solvation = 81.210381 kcal Electronic energy + Delta-G solvation = -24567.769218 eV Core-core repulsion = 21099.575733 eV Total energy + Delta-G solvation = -3468.193485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01371 -39.60762 -36.91264 -34.18010 -33.64457 -32.64630 -32.26366 -30.85499 -29.62097 -27.78458 -27.32811 -25.32907 -23.62871 -22.48613 -21.26733 -20.36456 -19.70366 -18.41734 -17.70771 -17.09805 -16.25919 -15.88988 -15.42964 -15.18882 -14.53940 -14.14900 -13.84773 -13.71746 -13.58936 -13.27914 -13.04862 -12.87319 -12.57254 -12.47217 -12.17582 -11.89449 -11.73997 -11.58271 -11.29396 -10.93878 -10.72686 -10.49819 -10.19619 -10.13545 -10.01974 -9.89262 -9.80221 -9.65878 -9.47546 -9.12087 -8.43517 -7.98639 -6.66692 -5.76098 -3.17357 1.71680 2.71733 2.91414 3.18624 3.42285 3.48549 3.51038 3.66021 4.05045 4.54701 4.65474 4.79114 5.07520 5.17689 5.23896 5.33831 5.44311 5.55566 5.59981 5.68335 5.73162 5.84846 5.85924 5.97933 6.13953 6.18480 6.33388 6.40172 6.49156 6.54167 6.59951 6.86191 6.97185 7.10243 7.13087 7.41165 7.52308 7.84404 8.01934 8.23398 8.47377 8.72444 9.24547 9.92084 10.36717 11.31897 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005811 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.325540 B = 4817.504897 C = 6003.883139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.274 3.726 3 N -0.532 5.532 4 C 0.258 3.742 5 C -0.051 4.051 6 C 0.533 3.467 7 O -0.550 6.550 8 N -0.583 5.583 9 C 0.131 3.869 10 C -0.170 4.170 11 C 0.163 3.837 12 N -0.591 5.591 13 C -0.250 4.250 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.909 5.909 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.163 3.837 22 C 0.076 3.924 23 N -0.295 5.295 24 N -0.485 5.485 25 H 0.437 0.563 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 3.378 0.763 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 N -0.262 5.262 4 C -0.025 4.025 5 C -0.093 4.093 6 C 0.319 3.681 7 O -0.428 6.428 8 N -0.315 5.315 9 C 0.010 3.990 10 C -0.211 4.211 11 C 0.035 3.965 12 N -0.312 5.312 13 C -0.379 4.379 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.555 5.555 17 Si 0.727 3.273 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.037 3.963 22 C -0.050 4.050 23 N -0.123 5.123 24 N -0.204 5.204 25 H 0.282 0.718 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.234 3.093 1.068 14.605 hybrid contribution -0.095 -1.760 -0.204 1.775 sum -14.330 1.332 0.863 14.417 Atomic orbital electron populations 1.20337 0.83912 1.04824 1.04222 1.24305 0.96451 0.83037 0.96628 1.70267 1.01391 1.29534 1.25012 1.23365 0.92423 0.89790 0.96961 1.20000 0.93834 0.98302 0.97141 1.19933 0.79883 0.78165 0.90100 1.90642 1.54495 1.51444 1.46268 1.47291 1.29718 1.47264 1.07222 1.20636 0.97852 0.98396 0.82124 1.21969 0.97916 1.01860 0.99326 1.20275 0.94296 0.94347 0.87595 1.43637 1.66710 1.10954 1.09924 1.19185 1.38232 0.87514 0.93014 0.91844 1.24915 0.99822 0.97752 0.96749 1.70002 1.52364 1.33112 0.99997 0.86366 0.77558 0.86074 0.77303 1.21334 1.21806 1.20578 1.21935 0.89969 0.95399 0.88974 1.22262 0.96022 0.97763 0.88905 1.78150 0.95978 1.12439 1.25776 1.47968 1.04490 1.09833 1.58071 0.71772 0.89215 0.90091 0.88501 0.86578 0.85760 0.92050 0.90596 0.91358 0.92785 0.93660 0.94792 0.93718 0.90507 0.93877 0.91468 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.27 3.65 8.24 -155.70 -1.28 2.37 16 3 N -0.53 -9.10 11.19 -8.16 -0.09 -9.19 16 4 C 0.26 4.86 6.63 -156.85 -1.04 3.82 16 5 C -0.05 -0.90 4.88 -29.03 -0.14 -1.05 16 6 C 0.53 10.74 7.66 -10.99 -0.08 10.66 16 7 O -0.55 -12.82 15.47 5.56 0.09 -12.73 16 8 N -0.58 -10.78 2.45 -176.43 -0.43 -11.22 16 9 C 0.13 2.27 5.74 -5.70 -0.03 2.23 16 10 C -0.17 -3.14 5.65 -28.92 -0.16 -3.31 16 11 C 0.16 3.32 5.63 -5.24 -0.03 3.29 16 12 N -0.59 -14.18 2.54 -172.02 -0.44 -14.62 16 13 C -0.25 -6.81 9.28 -15.06 -0.14 -6.95 16 14 H 0.06 1.77 7.87 -52.48 -0.41 1.35 16 15 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 16 N -0.91 -25.54 10.90 55.49 0.60 -24.94 16 17 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 C 0.16 3.58 5.17 -1.77 -0.01 3.57 16 22 C 0.08 1.30 5.04 -4.61 -0.02 1.28 16 23 N -0.30 -5.65 12.80 32.42 0.41 -5.24 16 24 N -0.49 -6.76 7.45 32.62 0.24 -6.52 16 25 H 0.44 4.23 8.96 -182.32 -1.63 2.59 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.12 1.70 7.37 -51.93 -0.38 1.31 16 30 H 0.12 2.33 7.29 -51.93 -0.38 1.95 16 31 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.08 1.36 7.13 -51.93 -0.37 0.99 16 33 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 36 H 0.03 0.63 7.59 -51.93 -0.39 0.23 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.08 1.89 5.70 -51.93 -0.30 1.59 16 39 H 0.04 1.01 8.00 -51.93 -0.42 0.59 16 40 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 41 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -35.92 331.94 -9.38 -45.29 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.09 Total: 1.04 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: -2.65 Total: 15.82 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: 0.30 Total: -71.72 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.92 -9.38 -45.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981116044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.505 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds