Wall clock time and date at job start Tue Mar 31 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30835 * 125.95792 * 2 1 4 4 C 1.33240 * 109.83045 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.53026 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47153 * 89.99266 * 5 4 3 7 7 O 1.21280 * 119.99787 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99676 * 179.72250 * 6 5 4 9 9 C 1.48216 * 119.96965 * 180.02562 * 8 6 5 10 10 C 1.47606 * 110.03660 * 102.55196 * 9 8 6 11 11 C 1.53799 * 111.84063 * 58.43944 * 10 9 8 12 12 N 1.43457 * 107.95972 * 281.53997 * 11 10 9 13 13 C 1.36937 * 118.93890 * 273.63021 * 12 11 10 14 14 H 1.08003 * 120.00206 * 24.94557 * 13 12 11 15 15 C 1.38810 * 120.00132 * 204.93789 * 13 12 11 16 16 N 1.31620 * 119.99973 * 14.62423 * 15 13 12 17 17 Si 1.86801 * 120.00180 * 194.61829 * 15 13 12 18 18 H 1.48497 * 109.47319 * 90.00431 * 17 15 13 19 19 H 1.48504 * 109.47213 * 210.00481 * 17 15 13 20 20 H 1.48504 * 109.47061 * 330.00319 * 17 15 13 21 21 C 1.48861 * 122.12235 * 93.61059 * 12 11 10 22 22 C 1.43618 * 119.96942 * 0.28317 * 8 6 5 23 23 N 1.30716 * 108.94747 * 0.25960 * 4 3 2 24 24 N 1.34424 * 125.96891 * 180.02562 * 2 1 3 25 25 H 0.97011 * 126.81870 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47181 * 89.98009 * 1 2 3 27 27 H 1.09000 * 109.46946 * 209.97551 * 1 2 3 28 28 H 1.09000 * 109.47883 * 329.97508 * 1 2 3 29 29 H 1.09001 * 109.46452 * 329.99490 * 5 4 3 30 30 H 1.08996 * 109.47200 * 209.99667 * 5 4 3 31 31 H 1.09005 * 109.32715 * 222.78574 * 9 8 6 32 32 H 1.09000 * 109.32422 * 342.25126 * 9 8 6 33 33 H 1.08992 * 109.10607 * 297.76290 * 10 9 8 34 34 H 1.09007 * 108.83956 * 178.93324 * 10 9 8 35 35 H 1.09004 * 109.76204 * 161.92190 * 11 10 9 36 36 H 1.09007 * 109.80901 * 41.18202 * 11 10 9 37 37 H 0.97000 * 120.00224 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47677 * 200.65768 * 21 12 11 39 39 H 1.09000 * 109.48731 * 80.63448 * 21 12 11 40 40 H 1.09003 * 108.87912 * 31.42065 * 22 8 6 41 41 H 1.09005 * 108.87352 * 149.85333 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6889 -0.0006 5 6 4.7372 1.6238 -0.0002 6 6 5.1314 1.9346 1.4208 7 8 4.5137 1.4448 2.3424 8 7 6.1742 2.7520 1.6673 9 6 6.5617 3.0569 3.0650 10 6 7.7526 2.2707 3.4425 11 6 8.9446 2.5559 2.5133 12 7 8.7397 1.8272 1.2947 13 6 9.1636 0.5272 1.2208 14 1 9.2632 -0.0604 2.1215 15 6 9.4652 -0.0355 -0.0118 16 7 9.6252 0.7361 -1.0660 17 14 9.6442 -1.8878 -0.1743 18 1 8.3252 -2.4857 -0.5030 19 1 10.6121 -2.1986 -1.2568 20 1 10.1377 -2.4518 1.1078 21 6 8.0808 2.4385 0.1081 22 6 6.9054 3.3314 0.5753 23 7 3.6195 -0.6166 -0.0065 24 7 2.2965 -1.0879 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3635 0.8897 0.5142 29 1 4.4698 2.5475 -0.5134 30 1 5.5741 1.1516 -0.5145 31 1 6.7855 4.1200 3.1537 32 1 5.7354 2.8081 3.7309 33 1 7.5099 1.2093 3.3930 34 1 8.0316 2.5236 4.4655 35 1 9.8690 2.2273 2.9884 36 1 8.9993 3.6234 2.2997 37 1 9.8363 0.3429 -1.9273 38 1 7.7024 1.6509 -0.5435 39 1 8.8040 3.0451 -0.4371 40 1 6.2253 3.4851 -0.2625 41 1 7.2999 4.2981 0.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981116044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:43 Heat of formation + Delta-G solvation = 56.269770 kcal Electronic energy + Delta-G solvation = -24568.850724 eV Core-core repulsion = 21099.575733 eV Total energy + Delta-G solvation = -3469.274991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.20286 -41.13506 -38.58830 -35.93581 -34.94591 -34.14548 -33.38353 -32.72941 -30.86633 -29.21390 -28.64277 -27.01200 -25.43563 -23.97097 -22.43340 -21.69071 -21.40138 -19.87361 -18.90193 -18.81784 -17.94785 -17.46091 -16.84341 -16.55235 -16.28116 -15.62045 -15.43243 -15.28089 -15.03823 -14.64050 -14.25116 -13.98016 -13.93409 -13.63944 -13.59604 -13.41584 -13.22464 -13.02507 -12.85961 -12.74103 -12.50796 -12.33537 -12.06926 -11.70256 -11.67149 -11.41861 -11.26363 -11.13838 -10.86411 -10.51915 -10.44160 -9.53477 -8.62655 -7.85021 -5.26692 0.55918 1.38640 1.43744 1.48281 1.55828 1.68281 1.74668 2.28372 2.50062 2.97797 3.28399 3.52782 3.63099 3.76572 3.88463 4.15296 4.24224 4.32935 4.35690 4.40125 4.54747 4.61670 4.71063 4.71650 4.77965 4.87048 4.96344 5.03495 5.07509 5.24172 5.26294 5.29247 5.33844 5.50829 5.62534 5.76050 5.83707 6.20668 6.41288 6.51717 7.03885 7.19026 7.21589 7.98697 8.34745 9.18880 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005811 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.325540 B = 4817.504897 C = 6003.883139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.286 3.714 3 N -0.562 5.562 4 C 0.242 3.758 5 C -0.046 4.046 6 C 0.527 3.473 7 O -0.588 6.588 8 N -0.582 5.582 9 C 0.128 3.872 10 C -0.155 4.155 11 C 0.160 3.840 12 N -0.606 5.606 13 C -0.256 4.256 14 H 0.048 0.952 15 C -0.036 4.036 16 N -0.925 5.925 17 Si 0.943 3.057 18 H -0.297 1.297 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.169 3.831 22 C 0.085 3.915 23 N -0.349 5.349 24 N -0.477 5.477 25 H 0.454 0.546 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.249 0.751 38 H 0.043 0.957 39 H 0.028 0.972 40 H 0.097 0.903 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 4.689 1.037 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.008 3.992 3 N -0.293 5.293 4 C -0.041 4.041 5 C -0.088 4.088 6 C 0.314 3.686 7 O -0.469 6.469 8 N -0.312 5.312 9 C 0.007 3.993 10 C -0.196 4.196 11 C 0.032 3.968 12 N -0.328 5.328 13 C -0.387 4.387 14 H 0.066 0.934 15 C -0.232 4.232 16 N -0.572 5.572 17 Si 0.773 3.227 18 H -0.224 1.224 19 H -0.214 1.214 20 H -0.203 1.203 21 C 0.043 3.957 22 C -0.040 4.040 23 N -0.179 5.179 24 N -0.197 5.197 25 H 0.302 0.698 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.165 0.835 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.942 4.407 1.357 16.596 hybrid contribution 0.382 -2.194 -0.235 2.239 sum -15.560 2.213 1.122 15.757 Atomic orbital electron populations 1.20665 0.79349 1.06538 1.06366 1.25417 0.98489 0.81814 0.93472 1.70260 1.00951 1.31261 1.26809 1.23513 0.93401 0.89870 0.97318 1.19971 0.93382 0.99541 0.95866 1.20343 0.79958 0.77739 0.90543 1.90609 1.55946 1.52863 1.47498 1.47435 1.29024 1.46596 1.08172 1.20791 0.96709 1.00469 0.81333 1.21776 0.97781 0.99178 1.00819 1.20436 0.94498 0.95476 0.86344 1.43881 1.67117 1.10318 1.11497 1.19297 1.37589 0.89282 0.92496 0.93389 1.25385 1.00616 1.00369 0.96782 1.70100 1.53330 1.33821 0.99934 0.85636 0.76833 0.82993 0.77244 1.22423 1.21370 1.20264 1.21766 0.91120 0.94747 0.88020 1.22166 0.94728 0.97362 0.89707 1.78005 0.99146 1.13103 1.27624 1.47859 1.03066 1.11087 1.57707 0.69779 0.86621 0.87039 0.88048 0.83486 0.87385 0.87845 0.91344 0.96000 0.89629 0.94706 0.91859 0.94128 0.93853 0.95411 0.88528 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.51 71.23 0.75 -0.04 16 2 C 0.29 7.17 8.24 138.23 1.14 8.31 16 3 N -0.56 -18.83 11.19 -179.73 -2.01 -20.84 16 4 C 0.24 9.23 6.63 138.63 0.92 10.15 16 5 C -0.05 -1.64 4.88 29.10 0.14 -1.50 16 6 C 0.53 21.15 7.66 87.66 0.67 21.82 16 7 O -0.59 -27.74 15.47 -3.03 -0.05 -27.79 16 8 N -0.58 -20.61 2.45 -830.50 -2.03 -22.64 16 9 C 0.13 4.11 5.74 84.36 0.48 4.59 16 10 C -0.15 -5.53 5.65 29.18 0.16 -5.37 16 11 C 0.16 6.27 5.63 87.21 0.49 6.76 16 12 N -0.61 -29.16 2.54 -698.16 -1.77 -30.93 16 13 C -0.26 -14.29 9.28 84.03 0.78 -13.51 16 14 H 0.05 2.77 7.87 -2.91 -0.02 2.75 16 15 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 16 N -0.93 -53.02 10.90 21.65 0.24 -52.78 16 17 Si 0.94 47.02 29.58 68.60 2.03 49.05 16 18 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 C 0.17 7.38 5.17 86.55 0.45 7.83 16 22 C 0.09 2.72 5.04 87.54 0.44 3.16 16 23 N -0.35 -13.65 12.80 -51.33 -0.66 -14.30 16 24 N -0.48 -12.98 7.45 -50.71 -0.38 -13.36 16 25 H 0.45 8.31 8.96 -213.08 -1.91 6.40 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.15 4.13 7.37 -2.39 -0.02 4.11 16 30 H 0.11 4.21 7.29 -2.39 -0.02 4.19 16 31 H 0.10 2.51 8.05 -2.38 -0.02 2.49 16 32 H 0.07 2.34 7.13 -2.39 -0.02 2.33 16 33 H 0.02 0.97 7.91 -2.39 -0.02 0.95 16 34 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.03 1.42 8.02 -2.38 -0.02 1.41 16 36 H 0.06 2.13 7.59 -2.38 -0.02 2.11 16 37 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.04 2.18 5.70 -2.39 -0.01 2.16 16 39 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 40 H 0.10 2.55 6.39 -2.39 -0.02 2.54 16 41 H 0.10 2.52 7.73 -2.38 -0.02 2.50 16 Total: -1.00 -81.61 331.94 1.36 -80.25 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.85 Total: 12.74 kcal Atomic # 6 Polarization: 33.77 SS G_CDS: 6.85 Total: 40.61 kcal Atomic # 7 Polarization: -148.25 SS G_CDS: -6.61 Total: -154.86 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -81.61 1.36 -80.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981116044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.520 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds