Wall clock time and date at job start Tue Mar 31 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00097 * 2 1 4 4 H 1.48505 * 109.46898 * 240.00045 * 3 2 1 5 5 H 1.48503 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47520 * 119.99764 * 3 2 1 7 7 C 1.38813 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99974 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46844 * 324.99531 * 10 9 7 12 12 C 1.52998 * 109.47038 * 85.00182 * 10 9 7 13 13 C 1.52991 * 109.47546 * 59.99970 * 12 10 9 14 14 C 1.53004 * 109.47300 * 59.99740 * 13 12 10 15 15 C 1.52998 * 109.47033 * 300.00574 * 14 13 12 16 16 H 1.09007 * 109.47033 * 299.99547 * 15 14 13 17 17 N 1.46500 * 109.46910 * 179.97438 * 15 14 13 18 18 C 1.34779 * 120.00261 * 84.99782 * 17 15 14 19 19 O 1.21279 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00113 * 179.97438 * 18 17 15 21 21 C 1.50699 * 109.47056 * 180.02562 * 20 18 17 22 22 N 1.33251 * 125.52327 * 270.32070 * 21 20 18 23 23 C 1.30831 * 109.82578 * 180.12916 * 22 21 20 24 24 N 1.34438 * 108.07816 * 359.59820 * 23 22 21 25 25 H 0.97001 * 126.81979 * 180.27522 * 24 23 22 26 26 N 1.30712 * 125.53061 * 89.99614 * 21 20 18 27 27 C 1.52991 * 109.47546 * 59.99577 * 15 14 13 28 28 H 0.97001 * 120.00304 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00344 * 359.97438 * 9 7 2 30 30 H 1.09009 * 109.46693 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.46884 * 299.99336 * 12 10 9 32 32 H 1.09000 * 109.47569 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47099 * 300.00499 * 13 12 10 34 34 H 1.09000 * 109.47144 * 179.97438 * 14 13 12 35 35 H 1.09007 * 109.46841 * 60.00239 * 14 13 12 36 36 H 0.97001 * 119.99888 * 264.99204 * 17 15 14 37 37 H 1.08998 * 109.47166 * 59.99767 * 20 18 17 38 38 H 1.08994 * 109.47008 * 299.99713 * 20 18 17 39 39 H 1.08002 * 125.96273 * 179.86887 * 23 22 21 40 40 H 1.09000 * 109.46978 * 60.00268 * 27 15 14 41 41 H 1.09003 * 109.47494 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 -0.5890 12 6 2.4219 -4.0356 1.4375 13 6 1.1437 -4.1848 2.2649 14 6 0.2664 -5.2801 1.6553 15 6 -0.0974 -4.9013 0.2183 16 1 -0.6425 -3.9572 0.2183 17 7 -0.9369 -5.9504 -0.3656 18 6 -2.2692 -5.9386 -0.1622 19 8 -2.7732 -5.0592 0.5039 20 6 -3.1329 -7.0174 -0.7633 21 6 -4.5725 -6.7751 -0.3893 22 7 -5.1799 -7.2475 0.6985 23 6 -6.4270 -6.8524 0.7173 24 7 -6.6421 -6.0983 -0.3747 25 1 -7.4722 -5.6646 -0.6273 26 7 -5.4261 -6.0625 -1.0764 27 6 1.1808 -4.7521 -0.6091 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9673 -4.9794 1.4374 31 1 3.0469 -3.2553 1.8718 32 1 1.4028 -4.4551 3.2886 33 1 0.5986 -3.2408 2.2649 34 1 -0.6441 -5.3866 2.2451 35 1 0.8114 -6.2241 1.6553 36 1 -0.5339 -6.6534 -0.8987 37 1 -2.8171 -7.9892 -0.3838 38 1 -3.0321 -7.0010 -1.8484 39 1 -7.1552 -7.0871 1.4795 40 1 1.7257 -5.6961 -0.6091 41 1 0.9215 -4.4827 -1.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981447612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:35 Heat of formation + Delta-G solvation = 50.813874 kcal Electronic energy + Delta-G solvation = -23545.538089 eV Core-core repulsion = 20076.026512 eV Total energy + Delta-G solvation = -3469.511576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21492 -39.73594 -37.91672 -34.39480 -33.42178 -32.95052 -31.80604 -30.88241 -29.89426 -28.45806 -27.73248 -23.62534 -23.03803 -22.25278 -21.80479 -20.78716 -19.98419 -18.63057 -18.36525 -17.21377 -16.99352 -15.94253 -15.56788 -15.31059 -14.70011 -14.60634 -14.38080 -13.76791 -13.65290 -13.51766 -13.31612 -12.98560 -12.52028 -12.24916 -12.02994 -11.90378 -11.71154 -11.31342 -10.83469 -10.76434 -10.67665 -10.29832 -10.18661 -10.16982 -10.11578 -10.02878 -9.94576 -9.77375 -9.47065 -9.34027 -8.84809 -8.66436 -6.88105 -5.68137 -2.97379 1.48893 2.51336 2.68032 2.85073 3.45986 3.48675 3.52626 3.54036 3.96136 4.48110 4.65285 4.74431 4.94285 5.21632 5.22698 5.28930 5.37638 5.56066 5.66566 5.77303 5.80543 5.92384 5.97277 6.05758 6.16145 6.18347 6.24008 6.26768 6.45701 6.51631 6.69629 6.77455 6.87628 6.87717 6.92178 7.09009 7.17853 7.71602 7.76324 7.94007 8.45745 8.49684 9.60528 10.18937 10.53037 11.53976 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.003686 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.961168 B = 7594.233826 C = 8550.930951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.179 3.821 11 H 0.051 0.949 12 C -0.135 4.135 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.147 3.853 16 H 0.098 0.902 17 N -0.724 5.724 18 C 0.517 3.483 19 O -0.522 6.522 20 C -0.050 4.050 21 C 0.250 3.750 22 N -0.535 5.535 23 C 0.261 3.739 24 N -0.484 5.484 25 H 0.441 0.559 26 N -0.301 5.301 27 C -0.127 4.127 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.396 0.604 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.222 0.778 40 H 0.061 0.939 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -19.076 -0.805 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.068 3.932 11 H 0.068 0.932 12 C -0.175 4.175 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.043 3.957 16 H 0.116 0.884 17 N -0.375 5.375 18 C 0.300 3.700 19 O -0.397 6.397 20 C -0.092 4.092 21 C -0.034 4.034 22 N -0.263 5.263 23 C -0.039 4.039 24 N -0.202 5.202 25 H 0.287 0.713 26 N -0.130 5.130 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.229 0.771 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.558 -18.134 -0.746 20.066 hybrid contribution -0.471 0.899 -0.113 1.022 sum -9.029 -17.235 -0.859 19.476 Atomic orbital electron populations 1.69661 1.05045 1.25688 1.57470 1.24731 0.95430 0.97574 1.03126 0.86314 0.78507 0.83872 0.77745 1.21380 1.21810 1.21354 1.19182 0.90904 0.84194 1.42806 0.91288 1.42511 1.05799 0.99614 1.88506 1.20160 0.93959 0.85992 0.93056 0.93153 1.22175 0.96880 0.99421 0.99054 1.21357 0.96718 0.99326 0.97388 1.21840 0.99594 0.98638 0.95773 1.21052 0.91074 0.91288 0.92298 0.88420 1.46078 1.06590 1.30322 1.54548 1.20119 0.82652 0.86194 0.80989 1.90784 1.73203 1.36999 1.38728 1.19917 0.85678 1.00406 1.03244 1.23309 0.96352 0.93959 0.89764 1.70343 1.05133 1.28685 1.22120 1.26046 0.95067 0.91286 0.91467 1.48073 1.12151 1.40874 1.19081 0.71330 1.78003 0.91369 1.23065 1.20597 1.22073 0.95467 0.99509 0.99570 0.93496 0.78019 0.93880 0.92075 0.93338 0.90416 0.92321 0.92760 0.77082 0.86180 0.86565 0.76168 0.92021 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -18.01 4.28 -53.42 -0.23 -18.24 16 10 C 0.18 3.48 3.10 -67.93 -0.21 3.27 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.13 -2.40 5.61 -26.74 -0.15 -2.55 16 13 C -0.11 -1.97 5.77 -26.73 -0.15 -2.12 16 14 C -0.12 -1.94 5.49 -26.73 -0.15 -2.09 16 15 C 0.15 2.45 2.28 -67.94 -0.16 2.30 16 16 H 0.10 2.12 5.94 -51.92 -0.31 1.81 16 17 N -0.72 -9.68 5.08 -53.81 -0.27 -9.95 16 18 C 0.52 7.95 7.79 -10.98 -0.09 7.86 16 19 O -0.52 -10.90 15.70 5.56 0.09 -10.81 16 20 C -0.05 -0.57 6.33 -29.03 -0.18 -0.75 16 21 C 0.25 3.50 6.63 -156.85 -1.04 2.45 16 22 N -0.53 -7.13 11.19 -11.97 -0.13 -7.26 16 23 C 0.26 2.42 13.13 -90.65 -1.19 1.23 16 24 N -0.48 -4.74 7.45 29.53 0.22 -4.52 16 25 H 0.44 2.55 8.96 -182.34 -1.63 0.91 16 26 N -0.30 -4.27 12.80 32.42 0.41 -3.85 16 27 C -0.13 -2.02 5.07 -26.73 -0.14 -2.16 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.38 10.44 6.06 -40.82 -0.25 10.19 16 30 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.70 7.60 -51.93 -0.39 1.30 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16 37 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.22 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -38.41 339.77 -9.92 -48.33 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.13 Total: 11.45 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.70 Total: 0.18 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: 0.72 Total: -72.02 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -38.41 -9.92 -48.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981447612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.143 kcal (2) G-P(sol) polarization free energy of solvation -38.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds