Wall clock time and date at job start Tue Mar 31 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00097 * 2 1 4 4 H 1.48505 * 109.46898 * 240.00045 * 3 2 1 5 5 H 1.48503 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47520 * 119.99764 * 3 2 1 7 7 C 1.38813 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99974 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46844 * 324.99531 * 10 9 7 12 12 C 1.52998 * 109.47038 * 85.00182 * 10 9 7 13 13 C 1.52991 * 109.47546 * 59.99970 * 12 10 9 14 14 C 1.53004 * 109.47300 * 59.99740 * 13 12 10 15 15 C 1.52998 * 109.47033 * 300.00574 * 14 13 12 16 16 H 1.09007 * 109.47033 * 299.99547 * 15 14 13 17 17 N 1.46500 * 109.46910 * 179.97438 * 15 14 13 18 18 C 1.34779 * 120.00261 * 84.99782 * 17 15 14 19 19 O 1.21279 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00113 * 179.97438 * 18 17 15 21 21 C 1.50699 * 109.47056 * 180.02562 * 20 18 17 22 22 N 1.33251 * 125.52327 * 270.32070 * 21 20 18 23 23 C 1.30831 * 109.82578 * 180.12916 * 22 21 20 24 24 N 1.34438 * 108.07816 * 359.59820 * 23 22 21 25 25 H 0.97001 * 126.81979 * 180.27522 * 24 23 22 26 26 N 1.30712 * 125.53061 * 89.99614 * 21 20 18 27 27 C 1.52991 * 109.47546 * 59.99577 * 15 14 13 28 28 H 0.97001 * 120.00304 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00344 * 359.97438 * 9 7 2 30 30 H 1.09009 * 109.46693 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.46884 * 299.99336 * 12 10 9 32 32 H 1.09000 * 109.47569 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47099 * 300.00499 * 13 12 10 34 34 H 1.09000 * 109.47144 * 179.97438 * 14 13 12 35 35 H 1.09007 * 109.46841 * 60.00239 * 14 13 12 36 36 H 0.97001 * 119.99888 * 264.99204 * 17 15 14 37 37 H 1.08998 * 109.47166 * 59.99767 * 20 18 17 38 38 H 1.08994 * 109.47008 * 299.99713 * 20 18 17 39 39 H 1.08002 * 125.96273 * 179.86887 * 23 22 21 40 40 H 1.09000 * 109.46978 * 60.00268 * 27 15 14 41 41 H 1.09003 * 109.47494 * 179.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 -0.5890 12 6 2.4219 -4.0356 1.4375 13 6 1.1437 -4.1848 2.2649 14 6 0.2664 -5.2801 1.6553 15 6 -0.0974 -4.9013 0.2183 16 1 -0.6425 -3.9572 0.2183 17 7 -0.9369 -5.9504 -0.3656 18 6 -2.2692 -5.9386 -0.1622 19 8 -2.7732 -5.0592 0.5039 20 6 -3.1329 -7.0174 -0.7633 21 6 -4.5725 -6.7751 -0.3893 22 7 -5.1799 -7.2475 0.6985 23 6 -6.4270 -6.8524 0.7173 24 7 -6.6421 -6.0983 -0.3747 25 1 -7.4722 -5.6646 -0.6273 26 7 -5.4261 -6.0625 -1.0764 27 6 1.1808 -4.7521 -0.6091 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.9673 -4.9794 1.4374 31 1 3.0469 -3.2553 1.8718 32 1 1.4028 -4.4551 3.2886 33 1 0.5986 -3.2408 2.2649 34 1 -0.6441 -5.3866 2.2451 35 1 0.8114 -6.2241 1.6553 36 1 -0.5339 -6.6534 -0.8987 37 1 -2.8171 -7.9892 -0.3838 38 1 -3.0321 -7.0010 -1.8484 39 1 -7.1552 -7.0871 1.4795 40 1 1.7257 -5.6961 -0.6091 41 1 0.9215 -4.4827 -1.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981447612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:35 Heat of formation + Delta-G solvation = 21.421000 kcal Electronic energy + Delta-G solvation = -23546.812659 eV Core-core repulsion = 20076.026512 eV Total energy + Delta-G solvation = -3470.786147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.05941 -41.02313 -39.35394 -35.99214 -34.72259 -34.26652 -32.76938 -32.62181 -31.08187 -29.97798 -29.05516 -25.68173 -23.95683 -23.40957 -23.27353 -21.97266 -21.09318 -20.00697 -19.28517 -19.18313 -18.15580 -17.28490 -16.57069 -16.53239 -16.26202 -15.76515 -15.71164 -15.35387 -15.24969 -15.07414 -14.55391 -14.32570 -13.80769 -13.42882 -13.36260 -13.14829 -13.01469 -12.81604 -12.78438 -12.60151 -12.18769 -12.13890 -11.80012 -11.54927 -11.45985 -11.22133 -11.12878 -11.07280 -10.90070 -10.80476 -10.54900 -9.97536 -8.94939 -7.90048 -5.17881 0.65997 1.45345 1.48918 1.54809 1.67819 1.72694 1.86140 2.40812 2.58218 3.18441 3.43137 3.68895 3.78055 3.87720 3.98794 4.09912 4.19953 4.23353 4.39742 4.46364 4.48329 4.59175 4.62284 4.73290 4.79914 4.84736 5.04284 5.13432 5.22588 5.26472 5.33536 5.36787 5.46519 5.49582 5.55337 5.67706 5.69473 6.26611 6.31499 6.64447 7.09980 7.36361 7.36813 8.17515 8.37520 9.33496 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.003686 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.961168 B = 7594.233826 C = 8550.930951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.082 4.082 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.301 1.301 6 H -0.278 1.278 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.735 5.735 10 C 0.166 3.834 11 H 0.055 0.945 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.108 4.108 15 C 0.153 3.847 16 H 0.037 0.963 17 N -0.705 5.705 18 C 0.513 3.487 19 O -0.587 6.587 20 C -0.042 4.042 21 C 0.231 3.769 22 N -0.573 5.573 23 C 0.272 3.728 24 N -0.477 5.477 25 H 0.457 0.543 26 N -0.345 5.345 27 C -0.114 4.114 28 H 0.246 0.754 29 H 0.369 0.631 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.421 0.579 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.273 0.727 40 H 0.113 0.887 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 -22.003 -1.041 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.073 0.927 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.147 4.147 15 C 0.048 3.952 16 H 0.055 0.945 17 N -0.357 5.357 18 C 0.299 3.701 19 O -0.466 6.466 20 C -0.084 4.084 21 C -0.052 4.052 22 N -0.302 5.302 23 C -0.026 4.026 24 N -0.197 5.197 25 H 0.305 0.695 26 N -0.175 5.175 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.202 0.798 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.259 0.741 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.289 0.711 40 H 0.131 0.869 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.211 -21.134 -1.019 22.354 hybrid contribution -0.906 1.733 0.001 1.955 sum -8.117 -19.401 -1.018 21.055 Atomic orbital electron populations 1.69863 1.06845 1.25704 1.60276 1.25554 0.96168 1.01157 1.04505 0.85249 0.77091 0.79444 0.78237 1.20142 1.22818 1.20463 1.19649 0.91480 0.85371 1.39895 0.90301 1.42770 1.05343 1.01095 1.88427 1.20524 0.94261 0.84876 0.94585 0.92701 1.22052 0.96500 1.00871 0.97096 1.21294 0.96708 0.97548 0.98980 1.21736 0.98783 0.99532 0.94626 1.20706 0.91167 0.89863 0.93451 0.94465 1.45805 1.05944 1.29912 1.54083 1.20875 0.83196 0.86133 0.79913 1.90762 1.74389 1.39732 1.41731 1.20028 0.83778 0.99973 1.04578 1.23771 0.97338 0.94019 0.90108 1.70335 1.06926 1.30334 1.22558 1.27035 0.94859 0.89211 0.91457 1.48020 1.11813 1.40883 1.18977 0.69496 1.77880 0.92977 1.24157 1.22514 1.21955 0.94621 1.00369 0.98312 0.94490 0.79817 0.89333 0.94265 0.91474 0.95754 0.94338 0.88636 0.74121 0.82761 0.83922 0.71148 0.86891 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.60 13.06 21.65 0.28 -63.32 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 3 Si 0.97 47.98 29.55 68.60 2.03 50.01 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.23 -13.13 9.93 84.03 0.83 -12.30 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.74 -37.75 4.28 -322.93 -1.38 -39.13 16 10 C 0.17 6.25 3.10 44.99 0.14 6.39 16 11 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 12 C -0.13 -4.20 5.61 30.59 0.17 -4.03 16 13 C -0.11 -3.80 5.77 30.59 0.18 -3.63 16 14 C -0.11 -3.36 5.49 30.60 0.17 -3.19 16 15 C 0.15 5.05 2.28 44.99 0.10 5.16 16 16 H 0.04 1.72 5.94 -2.38 -0.01 1.71 16 17 N -0.70 -17.69 5.08 -442.54 -2.25 -19.94 16 18 C 0.51 15.65 7.79 87.66 0.68 16.34 16 19 O -0.59 -25.66 15.70 -3.03 -0.05 -25.71 16 20 C -0.04 -0.88 6.33 29.10 0.18 -0.70 16 21 C 0.23 6.36 6.63 138.63 0.92 7.28 16 22 N -0.57 -14.74 11.19 -191.79 -2.15 -16.89 16 23 C 0.27 4.65 13.13 180.36 2.37 7.01 16 24 N -0.48 -9.02 7.45 -60.48 -0.45 -9.47 16 25 H 0.46 4.91 8.96 -213.10 -1.91 3.00 16 26 N -0.35 -9.80 12.80 -51.33 -0.66 -10.45 16 27 C -0.11 -3.35 5.07 30.59 0.16 -3.19 16 28 H 0.25 15.75 8.31 -92.71 -0.77 14.97 16 29 H 0.37 21.24 6.06 -92.71 -0.56 20.68 16 30 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.02 1.10 7.60 -2.39 -0.02 1.09 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.42 6.30 8.60 -92.71 -0.80 5.50 16 37 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.14 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.27 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -91.12 339.77 -0.44 -91.56 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -2.19 Total: 32.64 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 6.37 Total: 10.69 kcal Atomic # 7 Polarization: -152.59 SS G_CDS: -6.60 Total: -159.19 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -91.12 -0.44 -91.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981447612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.981 kcal (2) G-P(sol) polarization free energy of solvation -91.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds