Wall clock time and date at job start Tue Mar 31 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48492 * 109.47500 * 270.00401 * 3 2 1 5 5 H 1.48500 * 109.46957 * 30.00511 * 3 2 1 6 6 H 1.48499 * 109.46983 * 150.00206 * 3 2 1 7 7 C 1.38802 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00044 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00199 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99770 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99505 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 274.99457 * 17 15 14 19 19 O 1.21278 * 120.00033 * 0.02562 * 18 17 15 20 20 C 1.50706 * 119.99804 * 179.97438 * 18 17 15 21 21 C 1.50700 * 109.46757 * 180.02562 * 20 18 17 22 22 N 1.33241 * 125.53130 * 269.69421 * 21 20 18 23 23 C 1.30828 * 109.83039 * 179.85620 * 22 21 20 24 24 N 1.34427 * 108.07937 * 0.40521 * 23 22 21 25 25 H 0.97001 * 126.82688 * 179.72016 * 24 23 22 26 26 N 1.30716 * 125.52244 * 90.00176 * 21 20 18 27 27 C 1.52997 * 109.47007 * 204.99821 * 10 9 7 28 28 H 0.96997 * 120.00544 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99642 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 31 31 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 32 32 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 34 34 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 35 35 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00410 * 95.00239 * 17 15 14 37 37 H 1.08993 * 109.47165 * 299.99869 * 20 18 17 38 38 H 1.09002 * 109.46852 * 60.00491 * 20 18 17 39 39 H 1.08002 * 125.95899 * 180.20015 * 23 22 21 40 40 H 1.08993 * 109.47194 * 59.99623 * 27 10 9 41 41 H 1.09002 * 109.46695 * 299.99637 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5647 -3.2064 0.5891 12 6 4.2588 -2.9750 -1.4371 13 6 5.0244 -4.2996 -1.4372 14 6 6.4114 -4.0872 -0.8272 15 6 6.2647 -3.5830 0.6099 16 1 5.7175 -4.3188 1.1990 17 7 7.5927 -3.3790 1.1937 18 6 8.2459 -4.4129 1.7602 19 8 7.7343 -5.5122 1.7863 20 6 9.6123 -4.2032 2.3603 21 6 10.1193 -5.5061 2.9227 22 7 9.9290 -5.9379 4.1688 23 6 10.4972 -7.1058 4.3255 24 7 11.0802 -7.4454 3.1628 25 1 11.5805 -8.2557 2.9780 26 7 10.8219 -6.3934 2.2688 27 6 5.4992 -2.2587 0.6102 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3619 0.0004 30 1 3.2707 -3.1260 -1.8718 31 1 4.8064 -2.2393 -2.0262 32 1 5.1284 -4.6591 -2.4609 33 1 4.4772 -5.0355 -0.8480 34 1 6.9586 -3.3513 -1.4164 35 1 6.9566 -5.0310 -0.8269 36 1 8.0020 -2.4998 1.1727 37 1 10.2971 -3.8496 1.5897 38 1 9.5491 -3.4628 3.1578 39 1 10.5004 -7.6931 5.2319 40 1 5.3947 -1.8995 1.6339 41 1 6.0467 -1.5231 0.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981447613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:38 Heat of formation + Delta-G solvation = 50.104231 kcal Electronic energy + Delta-G solvation = -23018.638015 eV Core-core repulsion = 19549.095666 eV Total energy + Delta-G solvation = -3469.542349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39546 -39.96233 -38.03213 -34.79113 -33.64180 -33.31564 -31.98635 -31.32611 -30.11882 -28.80186 -27.91016 -23.55965 -23.17540 -22.41232 -21.68810 -20.59075 -20.24564 -19.50561 -18.65488 -17.68332 -17.08228 -16.28419 -15.81574 -15.49685 -14.98074 -14.57643 -14.51619 -13.99275 -13.87577 -13.59365 -13.50580 -13.16497 -12.75919 -12.50068 -12.39431 -12.21136 -12.09879 -11.24963 -11.01360 -10.96515 -10.83878 -10.49679 -10.38009 -10.34771 -10.31009 -10.21927 -10.07362 -9.97157 -9.62874 -9.56143 -9.01921 -8.87602 -7.25830 -5.75252 -3.10962 1.30480 2.32595 2.50404 2.57956 3.21798 3.37747 3.40270 3.45997 3.78700 4.30119 4.57660 4.60034 4.71059 4.88780 5.02575 5.05344 5.19628 5.28433 5.47305 5.53702 5.59835 5.65262 5.80543 5.84294 5.87838 5.95974 6.05871 6.08941 6.23216 6.27321 6.39971 6.48812 6.56961 6.66689 6.70068 6.90781 7.04752 7.45357 7.76740 8.01563 8.17362 8.43803 9.22262 9.94625 10.14354 11.43155 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002849 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.722682 B = 9826.430905 C =10195.918500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.150 3.850 16 H 0.089 0.911 17 N -0.723 5.723 18 C 0.521 3.479 19 O -0.530 6.530 20 C -0.051 4.051 21 C 0.251 3.749 22 N -0.534 5.534 23 C 0.263 3.737 24 N -0.484 5.484 25 H 0.441 0.559 26 N -0.305 5.305 27 C -0.133 4.133 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.400 0.600 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.223 0.777 40 H 0.070 0.930 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.469 -11.742 5.302 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.075 0.925 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.107 0.893 17 N -0.374 5.374 18 C 0.305 3.695 19 O -0.406 6.406 20 C -0.094 4.094 21 C -0.033 4.033 22 N -0.262 5.262 23 C -0.036 4.036 24 N -0.202 5.202 25 H 0.287 0.713 26 N -0.135 5.135 27 C -0.172 4.172 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.234 0.766 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.837 -12.285 4.864 28.133 hybrid contribution 1.082 0.925 0.055 1.425 sum 25.919 -11.360 4.920 28.723 Atomic orbital electron populations 1.69698 1.05108 1.25781 1.57650 1.24675 0.95231 0.97197 1.02154 0.86538 0.79179 0.85038 0.77687 1.21175 1.21828 1.20344 1.19081 0.80542 0.94717 1.42772 0.89165 1.42766 1.04006 1.01923 1.90340 1.20072 0.89458 0.89268 0.93402 0.92492 1.22252 1.00201 0.95255 0.99982 1.21479 0.95045 0.98714 1.00116 1.21889 0.98090 1.00954 0.95351 1.20995 0.81946 0.98398 0.94070 0.89286 1.46069 1.19701 1.11962 1.59670 1.20128 0.86524 0.84821 0.78006 1.90738 1.68106 1.24368 1.57408 1.19923 0.95194 0.92038 1.02215 1.23291 0.95239 0.96325 0.88424 1.70365 1.25201 1.11444 1.19189 1.26079 0.92017 0.93373 0.92148 1.48076 1.43654 1.19208 1.09296 0.71319 1.77972 1.22640 0.97932 1.14909 1.22121 0.97410 0.95596 1.02050 0.93090 0.80729 0.91408 0.92759 0.92374 0.92022 0.92051 0.92126 0.76616 0.86467 0.85901 0.76067 0.91141 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 2 C 0.00 0.09 5.50 -17.44 -0.10 -0.01 16 3 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.30 4.93 -53.42 -0.26 -17.56 16 10 C 0.19 3.50 2.77 -67.93 -0.19 3.32 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.14 -2.33 5.50 -26.73 -0.15 -2.47 16 13 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 14 C -0.12 -1.64 5.49 -26.73 -0.15 -1.78 16 15 C 0.15 2.02 2.45 -67.95 -0.17 1.86 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 17 N -0.72 -7.90 5.08 -53.83 -0.27 -8.17 16 18 C 0.52 6.54 7.79 -10.98 -0.09 6.45 16 19 O -0.53 -9.07 15.70 5.56 0.09 -8.99 16 20 C -0.05 -0.48 6.33 -29.03 -0.18 -0.66 16 21 C 0.25 2.98 6.63 -156.85 -1.04 1.94 16 22 N -0.53 -6.21 11.19 -11.98 -0.13 -6.35 16 23 C 0.26 1.97 13.13 -90.66 -1.19 0.78 16 24 N -0.48 -3.68 7.45 29.53 0.22 -3.46 16 25 H 0.44 1.57 8.96 -182.33 -1.63 -0.06 16 26 N -0.31 -3.57 12.80 32.42 0.41 -3.15 16 27 C -0.13 -1.95 4.86 -26.75 -0.13 -2.08 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 29 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.11 8.60 -40.82 -0.35 2.76 16 37 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -38.30 341.08 -9.71 -48.01 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.27 Total: 7.26 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.69 Total: -1.35 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: 0.74 Total: -67.28 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.30 -9.71 -48.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981447613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.112 kcal (2) G-P(sol) polarization free energy of solvation -38.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds