Wall clock time and date at job start Tue Mar 31 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48492 * 109.47500 * 270.00401 * 3 2 1 5 5 H 1.48500 * 109.46957 * 30.00511 * 3 2 1 6 6 H 1.48499 * 109.46983 * 150.00206 * 3 2 1 7 7 C 1.38802 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00044 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00199 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99770 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99505 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34781 * 119.99874 * 274.99457 * 17 15 14 19 19 O 1.21278 * 120.00033 * 0.02562 * 18 17 15 20 20 C 1.50706 * 119.99804 * 179.97438 * 18 17 15 21 21 C 1.50700 * 109.46757 * 180.02562 * 20 18 17 22 22 N 1.33241 * 125.53130 * 269.69421 * 21 20 18 23 23 C 1.30828 * 109.83039 * 179.85620 * 22 21 20 24 24 N 1.34427 * 108.07937 * 0.40521 * 23 22 21 25 25 H 0.97001 * 126.82688 * 179.72016 * 24 23 22 26 26 N 1.30716 * 125.52244 * 90.00176 * 21 20 18 27 27 C 1.52997 * 109.47007 * 204.99821 * 10 9 7 28 28 H 0.96997 * 120.00544 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99642 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 31 31 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 32 32 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 34 34 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 35 35 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 36 36 H 0.97002 * 120.00410 * 95.00239 * 17 15 14 37 37 H 1.08993 * 109.47165 * 299.99869 * 20 18 17 38 38 H 1.09002 * 109.46852 * 60.00491 * 20 18 17 39 39 H 1.08002 * 125.95899 * 180.20015 * 23 22 21 40 40 H 1.08993 * 109.47194 * 59.99623 * 27 10 9 41 41 H 1.09002 * 109.46695 * 299.99637 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5647 -3.2064 0.5891 12 6 4.2588 -2.9750 -1.4371 13 6 5.0244 -4.2996 -1.4372 14 6 6.4114 -4.0872 -0.8272 15 6 6.2647 -3.5830 0.6099 16 1 5.7175 -4.3188 1.1990 17 7 7.5927 -3.3790 1.1937 18 6 8.2459 -4.4129 1.7602 19 8 7.7343 -5.5122 1.7863 20 6 9.6123 -4.2032 2.3603 21 6 10.1193 -5.5061 2.9227 22 7 9.9290 -5.9379 4.1688 23 6 10.4972 -7.1058 4.3255 24 7 11.0802 -7.4454 3.1628 25 1 11.5805 -8.2557 2.9780 26 7 10.8219 -6.3934 2.2688 27 6 5.4992 -2.2587 0.6102 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3619 0.0004 30 1 3.2707 -3.1260 -1.8718 31 1 4.8064 -2.2393 -2.0262 32 1 5.1284 -4.6591 -2.4609 33 1 4.4772 -5.0355 -0.8480 34 1 6.9586 -3.3513 -1.4164 35 1 6.9566 -5.0310 -0.8269 36 1 8.0020 -2.4998 1.1727 37 1 10.2971 -3.8496 1.5897 38 1 9.5491 -3.4628 3.1578 39 1 10.5004 -7.6931 5.2319 40 1 5.3947 -1.8995 1.6339 41 1 6.0467 -1.5231 0.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981447613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:38 Heat of formation + Delta-G solvation = 20.970323 kcal Electronic energy + Delta-G solvation = -23019.901356 eV Core-core repulsion = 19549.095666 eV Total energy + Delta-G solvation = -3470.805690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.06010 -41.01811 -39.31572 -36.33302 -34.83518 -34.27346 -33.25810 -32.69265 -31.14917 -30.15739 -29.06566 -25.41559 -23.93907 -23.46577 -22.95745 -21.72701 -21.26330 -20.79036 -19.58804 -19.24568 -18.12310 -17.46153 -16.55671 -16.48026 -16.26376 -16.00271 -15.58147 -15.40198 -15.08390 -14.90616 -14.71350 -14.49167 -14.27782 -13.78696 -13.46835 -13.17066 -13.06447 -12.96017 -12.83907 -12.37601 -12.16462 -11.97769 -11.79887 -11.68112 -11.51819 -11.43766 -11.19859 -11.06749 -10.93387 -10.88917 -10.57192 -10.03705 -9.29145 -7.99393 -5.33361 0.65567 1.40258 1.45168 1.52415 1.64567 1.71225 1.86708 2.35633 2.51908 3.18878 3.31768 3.47444 3.68587 3.83893 3.86429 4.03655 4.13801 4.23095 4.28957 4.39563 4.47850 4.52843 4.57658 4.59884 4.66393 4.76895 4.99126 5.13026 5.16128 5.20745 5.24751 5.35546 5.37332 5.49016 5.50679 5.63551 5.80386 6.24446 6.26914 6.59513 7.10927 7.11120 7.28873 7.86184 8.07427 9.22417 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002849 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.722682 B = 9826.430905 C =10195.918500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.228 4.228 8 H 0.050 0.950 9 N -0.749 5.749 10 C 0.180 3.820 11 H 0.031 0.969 12 C -0.127 4.127 13 C -0.108 4.108 14 C -0.115 4.115 15 C 0.159 3.841 16 H 0.060 0.940 17 N -0.708 5.708 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.046 4.046 21 C 0.232 3.768 22 N -0.577 5.577 23 C 0.273 3.727 24 N -0.476 5.476 25 H 0.457 0.543 26 N -0.340 5.340 27 C -0.118 4.118 28 H 0.257 0.743 29 H 0.368 0.632 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.419 0.581 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.161 -10.881 5.530 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.360 4.360 8 H 0.068 0.932 9 N -0.392 5.392 10 C 0.071 3.929 11 H 0.050 0.950 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.153 4.153 15 C 0.053 3.947 16 H 0.079 0.921 17 N -0.360 5.360 18 C 0.307 3.693 19 O -0.461 6.461 20 C -0.088 4.088 21 C -0.051 4.051 22 N -0.306 5.306 23 C -0.025 4.025 24 N -0.196 5.196 25 H 0.306 0.694 26 N -0.171 5.171 27 C -0.157 4.157 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.286 0.714 40 H 0.088 0.912 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 28.624 -11.448 5.087 31.245 hybrid contribution -0.091 0.462 0.023 0.472 sum 28.533 -10.985 5.109 30.999 Atomic orbital electron populations 1.69902 1.07351 1.26669 1.59927 1.25573 0.96160 1.01551 1.02747 0.85332 0.78809 0.79079 0.78083 1.20448 1.22653 1.16859 1.18994 0.82769 0.93206 1.40983 0.93170 1.42712 1.02282 1.03863 1.90349 1.20271 0.91148 0.86953 0.94505 0.95038 1.22079 0.99190 0.97081 0.98393 1.21412 0.95346 0.96732 1.01209 1.21802 0.97123 1.01336 0.95077 1.20687 0.82940 0.96895 0.94177 0.92127 1.45835 1.18467 1.12828 1.58837 1.20697 0.87414 0.84053 0.77168 1.90718 1.69525 1.26484 1.59406 1.20031 0.93306 0.91885 1.03533 1.23725 0.95470 0.97174 0.88776 1.70354 1.27107 1.13509 1.19657 1.26990 0.89874 0.92514 0.93122 1.48025 1.43494 1.19118 1.08914 0.69408 1.77855 1.23603 0.99044 1.16549 1.21918 0.94960 0.96805 1.02003 0.93440 0.79863 0.94532 0.91479 0.90626 0.93180 0.89858 0.92626 0.74287 0.83581 0.83584 0.71395 0.91221 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.06 13.97 21.65 0.30 -63.75 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.96 44.89 27.74 68.60 1.90 46.80 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.24 -9.99 6.52 99.48 0.65 -9.34 16 7 C -0.23 -13.08 10.41 84.03 0.87 -12.20 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.75 -34.11 4.93 -322.93 -1.59 -35.70 16 10 C 0.18 6.64 2.77 44.99 0.12 6.77 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.13 -4.26 5.50 30.60 0.17 -4.09 16 13 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 14 C -0.11 -2.77 5.49 30.59 0.17 -2.60 16 15 C 0.16 4.01 2.45 44.98 0.11 4.12 16 16 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 17 N -0.71 -13.61 5.08 -442.60 -2.25 -15.86 16 18 C 0.52 12.21 7.79 87.66 0.68 12.89 16 19 O -0.58 -19.79 15.70 -3.02 -0.05 -19.83 16 20 C -0.05 -0.75 6.33 29.10 0.18 -0.56 16 21 C 0.23 5.20 6.63 138.63 0.92 6.12 16 22 N -0.58 -12.64 11.19 -191.80 -2.15 -14.78 16 23 C 0.27 3.53 13.13 180.36 2.37 5.90 16 24 N -0.48 -6.46 7.45 -60.49 -0.45 -6.91 16 25 H 0.46 2.46 8.96 -213.09 -1.91 0.55 16 26 N -0.34 -7.56 12.80 -51.33 -0.66 -8.22 16 27 C -0.12 -3.20 4.86 30.58 0.15 -3.05 16 28 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.37 15.61 5.66 -92.71 -0.52 15.09 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 4.86 8.60 -92.71 -0.80 4.07 16 37 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.27 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -87.37 341.08 -0.76 -88.12 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -2.22 Total: 23.28 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.40 Total: 6.86 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -6.79 Total: -145.22 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Total: -87.37 -0.76 -88.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981447613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.094 kcal (2) G-P(sol) polarization free energy of solvation -87.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds