Wall clock time and date at job start Tue Mar 31 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48493 * 109.47040 * 269.99712 * 3 2 1 5 5 H 1.48497 * 109.47399 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.46968 * 150.00184 * 3 2 1 7 7 C 1.38821 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00156 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99361 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99487 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47146 * 35.00211 * 10 9 7 12 12 C 1.52997 * 109.47556 * 275.00285 * 10 9 7 13 13 C 1.52993 * 109.47602 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47226 * 59.99295 * 13 12 10 15 15 C 1.52997 * 109.47406 * 300.00825 * 14 13 12 16 16 H 1.08999 * 109.46983 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46691 * 299.99403 * 15 14 13 18 18 C 1.34773 * 119.99969 * 274.72265 * 17 15 14 19 19 O 1.21281 * 120.00220 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00080 * 180.02562 * 18 17 15 21 21 N 1.46500 * 109.47299 * 180.02562 * 20 18 17 22 22 C 1.34429 * 126.81669 * 124.70840 * 21 20 18 23 23 N 1.30840 * 108.07039 * 179.89720 * 22 21 20 24 24 C 1.33238 * 109.82825 * 0.37923 * 23 22 21 25 25 N 1.30718 * 108.94995 * 359.76729 * 24 23 22 26 26 C 1.52993 * 109.47602 * 59.99406 * 15 14 13 27 27 H 0.96997 * 120.00036 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00517 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46832 * 300.00118 * 12 10 9 30 30 H 1.08999 * 109.46983 * 59.99878 * 12 10 9 31 31 H 1.08996 * 109.47599 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47012 * 299.99871 * 13 12 10 33 33 H 1.08995 * 109.47411 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.46655 * 60.00357 * 14 13 12 35 35 H 0.97005 * 119.99811 * 95.00317 * 17 15 14 36 36 H 1.09004 * 109.46762 * 300.00389 * 20 18 17 37 37 H 1.08998 * 109.46924 * 59.99727 * 20 18 17 38 38 H 1.07996 * 125.96654 * 0.03975 * 22 21 20 39 39 H 1.08001 * 125.52471 * 179.73029 * 24 23 22 40 40 H 1.09002 * 109.47012 * 60.00129 * 26 15 14 41 41 H 1.08996 * 109.47599 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5645 -3.2066 -0.5902 12 6 4.2588 -2.9753 1.4359 13 6 5.0242 -4.2999 1.4360 14 6 6.4112 -4.0875 0.8259 15 6 6.2646 -3.5832 -0.6111 16 1 7.2527 -3.4315 -1.0455 17 7 5.5291 -4.5723 -1.4030 18 6 6.1856 -5.6016 -1.9739 19 8 7.3852 -5.7093 -1.8317 20 6 5.4291 -6.6187 -2.7890 21 7 6.3611 -7.6285 -3.2969 22 6 6.2793 -8.9592 -3.1250 23 7 7.2985 -9.5104 -3.7327 24 6 8.0539 -8.5673 -4.2942 25 7 7.5208 -7.3980 -4.0547 26 6 5.4991 -2.2586 -0.6112 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 4.8063 -2.2396 2.0250 30 1 3.2707 -3.1262 1.8706 31 1 5.1291 -4.6590 2.4598 32 1 4.4770 -5.0358 0.8468 33 1 6.9568 -5.0311 0.8263 34 1 6.9584 -3.3517 1.4151 35 1 4.5701 -4.4841 -1.5198 36 1 4.6781 -7.1002 -2.1627 37 1 4.9395 -6.1217 -3.6264 38 1 5.5059 -9.4823 -2.5823 39 1 8.9601 -8.7407 -4.8555 40 1 6.0463 -1.5227 -0.0220 41 1 5.3942 -1.8995 -1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981502545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:31 Heat of formation + Delta-G solvation = 66.815347 kcal Electronic energy + Delta-G solvation = -23497.740786 eV Core-core repulsion = 20028.923085 eV Total energy + Delta-G solvation = -3468.817701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -42.24595 -40.24855 -38.18436 -34.75798 -34.22061 -33.19877 -31.45518 -31.37050 -30.16233 -28.58936 -27.82986 -23.63295 -22.88928 -22.18731 -22.16691 -21.13437 -20.95178 -19.11528 -17.88126 -17.60326 -17.47022 -16.03287 -15.68101 -15.54795 -14.96168 -14.93018 -14.63201 -14.34059 -14.03566 -13.81133 -13.71383 -13.10042 -12.90248 -12.69470 -12.34369 -12.11924 -12.00763 -11.90845 -11.36023 -11.06020 -11.01626 -10.55297 -10.46486 -10.37072 -10.21402 -10.16489 -9.94582 -9.81930 -9.69265 -9.66540 -9.12370 -8.98030 -7.37132 -5.86266 -3.22423 1.42126 1.95261 2.37453 2.80696 2.99494 3.30976 3.33877 3.39677 4.09993 4.17677 4.40265 4.50994 4.65217 4.67465 4.79154 4.91889 4.97741 5.06047 5.33590 5.37305 5.49218 5.51761 5.66151 5.76296 5.85568 5.91324 5.98363 6.01616 6.11365 6.24039 6.28293 6.30960 6.43615 6.51308 6.52776 6.74205 6.89102 7.33527 7.88101 7.88300 8.02095 8.32674 9.10692 9.83579 10.02737 11.31844 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.003204 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.279604 B = 8735.858115 C = 9032.563850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.186 3.814 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.128 4.128 15 C 0.155 3.845 16 H 0.085 0.915 17 N -0.714 5.714 18 C 0.500 3.500 19 O -0.517 6.517 20 C 0.107 3.893 21 N -0.367 5.367 22 C 0.254 3.746 23 N -0.547 5.547 24 C 0.190 3.810 25 N -0.289 5.289 26 C -0.138 4.138 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.076 0.924 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.675 -14.609 -3.597 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.076 3.924 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.167 4.167 15 C 0.050 3.950 16 H 0.103 0.897 17 N -0.368 5.368 18 C 0.284 3.716 19 O -0.392 6.392 20 C -0.019 4.019 21 N -0.159 5.159 22 C -0.043 4.043 23 N -0.274 5.274 24 C -0.113 4.113 25 N -0.115 5.115 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.242 0.758 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.235 0.765 39 H 0.232 0.768 40 H 0.095 0.905 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.604 -14.333 -3.751 19.451 hybrid contribution -0.239 1.345 0.255 1.389 sum 12.365 -12.988 -3.496 18.271 Atomic orbital electron populations 1.69695 1.05133 1.25941 1.57250 1.24679 0.95219 0.97267 1.01867 0.86558 0.79217 0.84980 0.77788 1.21081 1.21764 1.20313 1.19034 0.80514 0.94634 1.43382 0.89229 1.42790 1.04025 1.01955 1.90300 1.20117 0.89783 0.89148 0.93347 0.93188 1.22262 1.00166 0.95351 1.00038 1.21494 0.95327 0.98479 0.99952 1.21907 0.97935 1.01426 0.95388 1.20935 0.95856 0.87321 0.90863 0.89679 1.46121 1.12275 1.26223 1.52226 1.20352 0.88385 0.82693 0.80209 1.90786 1.14041 1.74498 1.59833 1.21648 0.90176 0.89935 1.00141 1.49981 1.19688 1.06277 1.39914 1.26082 0.98412 0.81796 0.97990 1.70524 1.06036 1.33921 1.16875 1.26011 1.00530 0.85366 0.99429 1.78202 0.96848 1.23190 1.13292 1.22181 0.97601 0.95570 1.02325 0.92992 0.80600 0.92635 0.91511 0.92645 0.92505 0.92091 0.91094 0.75835 0.85007 0.86103 0.76453 0.76811 0.90536 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.25 27.74 -169.99 -4.71 16.53 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.44 10.41 -15.06 -0.16 -6.60 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.75 -16.09 4.92 -53.42 -0.26 -16.35 16 10 C 0.19 3.02 2.60 -67.93 -0.18 2.85 16 11 H 0.05 0.80 6.45 -51.93 -0.33 0.46 16 12 C -0.14 -2.10 5.50 -26.74 -0.15 -2.25 16 13 C -0.11 -1.38 5.77 -26.73 -0.15 -1.53 16 14 C -0.13 -1.50 5.61 -26.73 -0.15 -1.65 16 15 C 0.15 1.85 2.79 -67.93 -0.19 1.66 16 16 H 0.09 1.11 7.57 -51.93 -0.39 0.72 16 17 N -0.71 -7.45 4.23 -53.81 -0.23 -7.67 16 18 C 0.50 5.63 7.83 -10.98 -0.09 5.54 16 19 O -0.52 -8.13 15.40 5.56 0.09 -8.05 16 20 C 0.11 0.81 7.03 -5.19 -0.04 0.77 16 21 N -0.37 -3.82 3.41 -63.81 -0.22 -4.04 16 22 C 0.25 2.27 12.63 -90.65 -1.14 1.12 16 23 N -0.55 -6.22 11.19 -15.83 -0.18 -6.40 16 24 C 0.19 2.16 13.03 -91.81 -1.20 0.96 16 25 N -0.29 -3.81 11.81 29.29 0.35 -3.47 16 26 C -0.14 -1.86 5.08 -26.73 -0.14 -1.99 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.36 7.78 5.66 -40.82 -0.23 7.54 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.41 3.69 6.87 -40.82 -0.28 3.40 16 36 H 0.13 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.22 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -36.09 337.02 -8.86 -44.95 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.87 Total: 7.87 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.67 Total: -1.05 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: 0.24 Total: -65.32 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.09 -8.86 -44.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.762 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds