Wall clock time and date at job start Tue Mar 31 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48493 * 109.47040 * 269.99712 * 3 2 1 5 5 H 1.48497 * 109.47399 * 30.00358 * 3 2 1 6 6 H 1.48505 * 109.46968 * 150.00184 * 3 2 1 7 7 C 1.38821 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00156 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99361 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99487 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47146 * 35.00211 * 10 9 7 12 12 C 1.52997 * 109.47556 * 275.00285 * 10 9 7 13 13 C 1.52993 * 109.47602 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47226 * 59.99295 * 13 12 10 15 15 C 1.52997 * 109.47406 * 300.00825 * 14 13 12 16 16 H 1.08999 * 109.46983 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46691 * 299.99403 * 15 14 13 18 18 C 1.34773 * 119.99969 * 274.72265 * 17 15 14 19 19 O 1.21281 * 120.00220 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00080 * 180.02562 * 18 17 15 21 21 N 1.46500 * 109.47299 * 180.02562 * 20 18 17 22 22 C 1.34429 * 126.81669 * 124.70840 * 21 20 18 23 23 N 1.30840 * 108.07039 * 179.89720 * 22 21 20 24 24 C 1.33238 * 109.82825 * 0.37923 * 23 22 21 25 25 N 1.30718 * 108.94995 * 359.76729 * 24 23 22 26 26 C 1.52993 * 109.47602 * 59.99406 * 15 14 13 27 27 H 0.96997 * 120.00036 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00517 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46832 * 300.00118 * 12 10 9 30 30 H 1.08999 * 109.46983 * 59.99878 * 12 10 9 31 31 H 1.08996 * 109.47599 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47012 * 299.99871 * 13 12 10 33 33 H 1.08995 * 109.47411 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.46655 * 60.00357 * 14 13 12 35 35 H 0.97005 * 119.99811 * 95.00317 * 17 15 14 36 36 H 1.09004 * 109.46762 * 300.00389 * 20 18 17 37 37 H 1.08998 * 109.46924 * 59.99727 * 20 18 17 38 38 H 1.07996 * 125.96654 * 0.03975 * 22 21 20 39 39 H 1.08001 * 125.52471 * 179.73029 * 24 23 22 40 40 H 1.09002 * 109.47012 * 60.00129 * 26 15 14 41 41 H 1.08996 * 109.47599 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5645 -3.2066 -0.5902 12 6 4.2588 -2.9753 1.4359 13 6 5.0242 -4.2999 1.4360 14 6 6.4112 -4.0875 0.8259 15 6 6.2646 -3.5832 -0.6111 16 1 7.2527 -3.4315 -1.0455 17 7 5.5291 -4.5723 -1.4030 18 6 6.1856 -5.6016 -1.9739 19 8 7.3852 -5.7093 -1.8317 20 6 5.4291 -6.6187 -2.7890 21 7 6.3611 -7.6285 -3.2969 22 6 6.2793 -8.9592 -3.1250 23 7 7.2985 -9.5104 -3.7327 24 6 8.0539 -8.5673 -4.2942 25 7 7.5208 -7.3980 -4.0547 26 6 5.4991 -2.2586 -0.6112 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3622 -0.0007 29 1 4.8063 -2.2396 2.0250 30 1 3.2707 -3.1262 1.8706 31 1 5.1291 -4.6590 2.4598 32 1 4.4770 -5.0358 0.8468 33 1 6.9568 -5.0311 0.8263 34 1 6.9584 -3.3517 1.4151 35 1 4.5701 -4.4841 -1.5198 36 1 4.6781 -7.1002 -2.1627 37 1 4.9395 -6.1217 -3.6264 38 1 5.5059 -9.4823 -2.5823 39 1 8.9601 -8.7407 -4.8555 40 1 6.0463 -1.5227 -0.0220 41 1 5.3942 -1.8995 -1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981502545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:28 Heat of formation + Delta-G solvation = 42.522222 kcal Electronic energy + Delta-G solvation = -23498.794215 eV Core-core repulsion = 20028.923085 eV Total energy + Delta-G solvation = -3469.871130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -42.97611 -41.22228 -39.30345 -36.27322 -34.97316 -34.43865 -33.21924 -32.13993 -31.20820 -30.01243 -28.62850 -25.37779 -23.82025 -23.20419 -22.87247 -22.44614 -21.87017 -20.33960 -19.50690 -18.53447 -18.24921 -16.87099 -16.84653 -16.55877 -16.33976 -15.91123 -15.69061 -15.37315 -15.16230 -14.92833 -14.71087 -14.57732 -14.23190 -13.88958 -13.53410 -13.13968 -13.06627 -12.99868 -12.85342 -12.74370 -12.37343 -12.00491 -11.80224 -11.61203 -11.52874 -11.31632 -11.03652 -10.99169 -10.87140 -10.74874 -10.49899 -10.05615 -9.26875 -7.99098 -5.31228 0.71290 1.32635 1.40365 1.42044 1.49368 1.54571 2.04651 2.19773 2.51026 3.32817 3.44605 3.55340 3.57151 3.75693 3.84970 3.91767 4.09556 4.18117 4.18825 4.28010 4.33212 4.43245 4.52990 4.65651 4.69902 4.79187 4.93031 5.09524 5.15825 5.21232 5.26632 5.37435 5.46853 5.50290 5.51152 5.64034 5.82621 5.89288 6.25432 6.50219 7.12100 7.13824 7.19605 7.89551 8.06174 9.22224 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.003204 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.279604 B = 8735.858115 C = 9032.563850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.948 3.052 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.253 1.253 7 C -0.220 4.220 8 H 0.064 0.936 9 N -0.753 5.753 10 C 0.180 3.820 11 H 0.056 0.944 12 C -0.130 4.130 13 C -0.103 4.103 14 C -0.121 4.121 15 C 0.162 3.838 16 H 0.076 0.924 17 N -0.707 5.707 18 C 0.500 3.500 19 O -0.565 6.565 20 C 0.107 3.893 21 N -0.375 5.375 22 C 0.263 3.737 23 N -0.577 5.577 24 C 0.183 3.817 25 N -0.337 5.337 26 C -0.126 4.126 27 H 0.255 0.745 28 H 0.363 0.637 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.181 0.819 37 H 0.139 0.861 38 H 0.266 0.734 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.604 -15.528 -3.422 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.230 1.230 6 H -0.177 1.177 7 C -0.351 4.351 8 H 0.082 0.918 9 N -0.396 5.396 10 C 0.072 3.928 11 H 0.074 0.926 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.159 4.159 15 C 0.056 3.944 16 H 0.095 0.905 17 N -0.361 5.361 18 C 0.286 3.714 19 O -0.443 6.443 20 C -0.018 4.018 21 N -0.166 5.166 22 C -0.033 4.033 23 N -0.305 5.305 24 C -0.119 4.119 25 N -0.164 5.164 26 C -0.164 4.164 27 H 0.064 0.936 28 H 0.196 0.804 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.198 0.802 37 H 0.157 0.843 38 H 0.282 0.718 39 H 0.250 0.750 40 H 0.100 0.900 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.566 -15.278 -3.572 20.741 hybrid contribution -0.536 1.513 0.220 1.620 sum 13.029 -13.765 -3.352 19.248 Atomic orbital electron populations 1.69866 1.07050 1.26410 1.60256 1.25430 0.95970 1.00976 1.03291 0.85503 0.78678 0.80269 0.77865 1.20749 1.22999 1.17714 1.19034 0.82539 0.93368 1.40120 0.91797 1.42861 1.02484 1.04049 1.90186 1.20382 0.90889 0.87138 0.94394 0.92640 1.22105 0.99216 0.97096 0.98631 1.21398 0.95059 0.96711 1.00991 1.21834 0.97574 1.01439 0.95053 1.20756 0.95308 0.86951 0.91345 0.90540 1.46044 1.12543 1.25789 1.51765 1.20962 0.87939 0.82904 0.79638 1.90774 1.16256 1.75663 1.61607 1.21986 0.89756 0.89232 1.00861 1.50119 1.19391 1.07309 1.39767 1.27014 0.98295 0.81399 0.96560 1.70535 1.07200 1.34616 1.18145 1.26483 1.01105 0.85119 0.99217 1.78110 0.98716 1.24470 1.15111 1.22032 0.95777 0.96660 1.01977 0.93589 0.80401 0.93013 0.94093 0.91595 0.91342 0.92325 0.90572 0.74858 0.80176 0.84317 0.71831 0.74955 0.90012 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.81 13.97 21.65 0.30 -60.50 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.95 43.71 27.74 68.60 1.90 45.62 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 7 C -0.22 -11.47 10.41 84.04 0.87 -10.59 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -31.28 4.92 -322.92 -1.59 -32.87 16 10 C 0.18 5.51 2.60 44.99 0.12 5.63 16 11 H 0.06 1.66 6.45 -2.39 -0.02 1.64 16 12 C -0.13 -3.75 5.50 30.59 0.17 -3.58 16 13 C -0.10 -2.22 5.77 30.59 0.18 -2.04 16 14 C -0.12 -2.52 5.61 30.59 0.17 -2.35 16 15 C 0.16 3.52 2.79 44.99 0.13 3.64 16 16 H 0.08 1.88 7.57 -2.39 -0.02 1.86 16 17 N -0.71 -12.98 4.23 -442.54 -1.87 -14.86 16 18 C 0.50 10.16 7.83 87.66 0.69 10.84 16 19 O -0.57 -17.18 15.40 -3.03 -0.05 -17.23 16 20 C 0.11 1.26 7.03 85.64 0.60 1.87 16 21 N -0.37 -6.97 3.41 -355.79 -1.21 -8.18 16 22 C 0.26 3.98 12.63 180.36 2.28 6.26 16 23 N -0.58 -12.32 11.19 -204.00 -2.28 -14.61 16 24 C 0.18 4.08 13.03 180.76 2.36 6.44 16 25 N -0.34 -8.67 11.81 -61.24 -0.72 -9.39 16 26 C -0.13 -3.10 5.08 30.59 0.16 -2.94 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.36 14.81 5.66 -92.71 -0.52 14.28 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.32 7.60 -2.39 -0.02 1.31 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 6.31 6.87 -92.70 -0.64 5.67 16 36 H 0.18 0.31 8.09 -2.39 -0.02 0.29 16 37 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.27 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -80.71 337.02 2.49 -78.23 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.17 Total: 23.83 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 8.18 Total: 9.96 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -7.38 Total: -140.41 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.62 kcal Total: -80.71 2.49 -78.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.748 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds