Wall clock time and date at job start Tue Mar 31 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48503 * 109.47220 * 270.00302 * 3 2 1 5 5 H 1.48505 * 109.47295 * 29.99653 * 3 2 1 6 6 H 1.48495 * 109.47278 * 149.99663 * 3 2 1 7 7 C 1.38813 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99736 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47587 * 35.00097 * 10 9 7 12 12 C 1.53004 * 109.47257 * 274.99899 * 10 9 7 13 13 C 1.53000 * 109.47197 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47580 * 59.99952 * 13 12 10 15 15 C 1.53004 * 109.46895 * 300.00233 * 14 13 12 16 16 H 1.08999 * 109.46912 * 300.00041 * 15 14 13 17 17 N 1.46497 * 109.47119 * 179.97438 * 15 14 13 18 18 C 1.34782 * 119.99868 * 84.99791 * 17 15 14 19 19 O 1.21285 * 119.99979 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99798 * 180.02562 * 18 17 15 21 21 N 1.46497 * 109.46923 * 179.97438 * 20 18 17 22 22 C 1.34433 * 126.81976 * 124.99393 * 21 20 18 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.52998 * 109.47308 * 154.99980 * 10 9 7 27 27 H 0.97001 * 119.99828 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00126 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47089 * 59.99988 * 12 10 9 30 30 H 1.09005 * 109.46980 * 300.00216 * 12 10 9 31 31 H 1.08999 * 109.46774 * 299.99576 * 13 12 10 32 32 H 1.08998 * 109.46874 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.47174 * 179.97438 * 14 13 12 34 34 H 1.09005 * 109.46990 * 59.99840 * 14 13 12 35 35 H 0.96997 * 120.00073 * 265.00111 * 17 15 14 36 36 H 1.08999 * 109.47201 * 60.00170 * 20 18 17 37 37 H 1.09001 * 109.47004 * 300.00110 * 20 18 17 38 38 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 39 39 H 1.08000 * 125.52705 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.47374 * 59.99898 * 26 10 9 41 41 H 1.09005 * 109.47383 * 300.00117 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 1 2.9683 -3.5503 0.5918 12 6 2.4230 -4.0362 -1.4349 13 6 3.1875 -5.3616 -1.4338 14 6 2.3094 -6.4564 -0.8245 15 6 1.9444 -6.0769 0.6121 16 1 2.8546 -5.9707 1.2022 17 7 1.1031 -7.1249 1.1952 18 6 1.6714 -8.2073 1.7626 19 8 2.8792 -8.3140 1.7900 20 6 0.8059 -9.2857 2.3621 21 7 1.6559 -10.3457 2.9099 22 6 1.6397 -10.8225 4.1668 23 7 2.5435 -11.7642 4.2553 24 6 3.1583 -11.9124 3.0825 25 7 2.6516 -11.0635 2.2275 26 6 1.1804 -4.7518 0.6111 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 3.0483 -3.2561 -1.8691 30 1 1.5127 -4.1427 -2.0250 31 1 4.0977 -5.2554 -0.8436 32 1 3.4471 -5.6321 -2.4572 33 1 2.8538 -7.4006 -0.8242 34 1 1.3991 -6.5625 -1.4147 35 1 0.1371 -7.0398 1.1730 36 1 0.1581 -9.7022 1.5908 37 1 0.1955 -8.8606 3.1588 38 1 0.9903 -10.4898 4.9631 39 1 3.9469 -12.6197 2.8723 40 1 0.2701 -4.8584 0.0211 41 1 0.9203 -4.4815 1.6346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981502546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:37 Heat of formation + Delta-G solvation = 60.348632 kcal Electronic energy + Delta-G solvation = -23051.811031 eV Core-core repulsion = 19582.712912 eV Total energy + Delta-G solvation = -3469.098118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28742 -40.07860 -38.06199 -34.81879 -34.27707 -33.40515 -31.41397 -31.18199 -29.94031 -28.21162 -27.50647 -23.81713 -22.93610 -22.21285 -21.99322 -21.32908 -20.47645 -19.48892 -17.78754 -17.62812 -16.97674 -16.18633 -15.97596 -15.27843 -15.11571 -14.65250 -14.45191 -14.23811 -13.93159 -13.78340 -13.63869 -13.22149 -13.11650 -12.69070 -12.23618 -12.14787 -12.02888 -11.04505 -11.02391 -10.90929 -10.78302 -10.55698 -10.41243 -10.30309 -10.24588 -10.20999 -10.02286 -9.94092 -9.73079 -9.57201 -9.12057 -8.91073 -7.00870 -5.81162 -3.09857 1.37525 1.90357 2.33161 2.77037 2.92795 3.40941 3.46691 3.47801 4.05473 4.10651 4.34817 4.54149 4.55133 4.62719 4.91110 4.98344 5.04179 5.25712 5.45083 5.54189 5.62588 5.66969 5.81083 5.91003 5.94531 5.96296 6.08924 6.19832 6.21006 6.25942 6.41089 6.46903 6.49037 6.55224 6.67272 6.91579 7.07133 7.28683 7.67170 7.84150 7.98596 8.37633 9.48964 10.05533 10.40309 11.41564 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.002708 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.878131 B =10336.259010 C =10657.910329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.151 3.849 16 H 0.087 0.913 17 N -0.720 5.720 18 C 0.498 3.502 19 O -0.511 6.511 20 C 0.110 3.890 21 N -0.369 5.369 22 C 0.254 3.746 23 N -0.546 5.546 24 C 0.191 3.809 25 N -0.288 5.288 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.065 0.935 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -21.113 4.418 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.047 3.953 16 H 0.105 0.895 17 N -0.372 5.372 18 C 0.281 3.719 19 O -0.385 6.385 20 C -0.017 4.017 21 N -0.161 5.161 22 C -0.043 4.043 23 N -0.273 5.273 24 C -0.112 4.112 25 N -0.115 5.115 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.084 0.916 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.418 -21.096 3.981 21.473 hybrid contribution -0.599 1.211 -0.009 1.352 sum -1.017 -19.885 3.972 20.303 Atomic orbital electron populations 1.69656 1.05110 1.25669 1.57821 1.24735 0.95522 0.97696 1.03017 0.86202 0.78695 0.83842 0.77546 1.21713 1.21783 1.20737 1.19242 0.91029 0.84047 1.42555 0.91147 1.42393 1.05724 0.99696 1.88635 1.20091 0.94084 0.85520 0.93003 0.93387 1.22296 0.99740 0.95242 1.00452 1.21486 0.98513 0.95337 1.00022 1.21875 1.00157 0.98925 0.95268 1.21051 0.94342 0.85869 0.94062 0.89466 1.46090 1.10626 1.21029 1.59453 1.20375 0.89278 0.82945 0.79312 1.90812 1.14053 1.76997 1.56599 1.21623 0.91586 0.86402 1.02103 1.49988 1.28302 1.28623 1.09159 1.26085 0.97680 0.92594 0.87913 1.70525 1.10981 1.20081 1.25668 1.26026 1.00248 0.98128 0.86824 1.78202 1.03442 1.08838 1.21005 1.22085 0.99385 0.93253 1.02039 0.93525 0.78340 0.91849 0.92636 0.92195 0.92442 0.92154 0.92016 0.76559 0.86331 0.85100 0.76445 0.76750 0.91619 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.37 5.12 -53.43 -0.27 -17.64 16 10 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.49 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.12 -1.61 5.50 -26.73 -0.15 -1.75 16 15 C 0.15 1.95 2.45 -67.95 -0.17 1.78 16 16 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 17 N -0.72 -6.98 5.08 -53.83 -0.27 -7.25 16 18 C 0.50 5.43 7.83 -10.98 -0.09 5.35 16 19 O -0.51 -8.23 15.40 5.55 0.09 -8.14 16 20 C 0.11 0.71 7.03 -5.19 -0.04 0.68 16 21 N -0.37 -3.64 3.41 -63.81 -0.22 -3.85 16 22 C 0.25 2.15 12.63 -90.65 -1.14 1.00 16 23 N -0.55 -6.04 11.19 -15.83 -0.18 -6.22 16 24 C 0.19 2.11 13.03 -91.81 -1.20 0.92 16 25 N -0.29 -3.69 11.81 29.29 0.35 -3.35 16 26 C -0.13 -1.88 4.85 -26.76 -0.13 -2.01 16 27 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 2.58 8.60 -40.82 -0.35 2.23 16 36 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.13 0.29 8.09 -51.93 -0.42 -0.13 16 38 H 0.22 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -36.63 344.56 -9.36 -45.99 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.10 Total: 7.18 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.65 Total: -2.13 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 0.13 Total: -65.18 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.63 -9.36 -45.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.341 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds