Wall clock time and date at job start Tue Mar 31 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48503 * 109.47220 * 270.00302 * 3 2 1 5 5 H 1.48505 * 109.47295 * 29.99653 * 3 2 1 6 6 H 1.48495 * 109.47278 * 149.99663 * 3 2 1 7 7 C 1.38813 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99736 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47587 * 35.00097 * 10 9 7 12 12 C 1.53004 * 109.47257 * 274.99899 * 10 9 7 13 13 C 1.53000 * 109.47197 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47580 * 59.99952 * 13 12 10 15 15 C 1.53004 * 109.46895 * 300.00233 * 14 13 12 16 16 H 1.08999 * 109.46912 * 300.00041 * 15 14 13 17 17 N 1.46497 * 109.47119 * 179.97438 * 15 14 13 18 18 C 1.34782 * 119.99868 * 84.99791 * 17 15 14 19 19 O 1.21285 * 119.99979 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99798 * 180.02562 * 18 17 15 21 21 N 1.46497 * 109.46923 * 179.97438 * 20 18 17 22 22 C 1.34433 * 126.81976 * 124.99393 * 21 20 18 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.52998 * 109.47308 * 154.99980 * 10 9 7 27 27 H 0.97001 * 119.99828 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00126 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47089 * 59.99988 * 12 10 9 30 30 H 1.09005 * 109.46980 * 300.00216 * 12 10 9 31 31 H 1.08999 * 109.46774 * 299.99576 * 13 12 10 32 32 H 1.08998 * 109.46874 * 179.97438 * 13 12 10 33 33 H 1.08992 * 109.47174 * 179.97438 * 14 13 12 34 34 H 1.09005 * 109.46990 * 59.99840 * 14 13 12 35 35 H 0.96997 * 120.00073 * 265.00111 * 17 15 14 36 36 H 1.08999 * 109.47201 * 60.00170 * 20 18 17 37 37 H 1.09001 * 109.47004 * 300.00110 * 20 18 17 38 38 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 39 39 H 1.08000 * 125.52705 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.47374 * 59.99898 * 26 10 9 41 41 H 1.09005 * 109.47383 * 300.00117 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 1 2.9683 -3.5503 0.5918 12 6 2.4230 -4.0362 -1.4349 13 6 3.1875 -5.3616 -1.4338 14 6 2.3094 -6.4564 -0.8245 15 6 1.9444 -6.0769 0.6121 16 1 2.8546 -5.9707 1.2022 17 7 1.1031 -7.1249 1.1952 18 6 1.6714 -8.2073 1.7626 19 8 2.8792 -8.3140 1.7900 20 6 0.8059 -9.2857 2.3621 21 7 1.6559 -10.3457 2.9099 22 6 1.6397 -10.8225 4.1668 23 7 2.5435 -11.7642 4.2553 24 6 3.1583 -11.9124 3.0825 25 7 2.6516 -11.0635 2.2275 26 6 1.1804 -4.7518 0.6111 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 3.0483 -3.2561 -1.8691 30 1 1.5127 -4.1427 -2.0250 31 1 4.0977 -5.2554 -0.8436 32 1 3.4471 -5.6321 -2.4572 33 1 2.8538 -7.4006 -0.8242 34 1 1.3991 -6.5625 -1.4147 35 1 0.1371 -7.0398 1.1730 36 1 0.1581 -9.7022 1.5908 37 1 0.1955 -8.8606 3.1588 38 1 0.9903 -10.4898 4.9631 39 1 3.9469 -12.6197 2.8723 40 1 0.2701 -4.8584 0.0211 41 1 0.9203 -4.4815 1.6346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981502546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:36 Heat of formation + Delta-G solvation = 35.175751 kcal Electronic energy + Delta-G solvation = -23052.902609 eV Core-core repulsion = 19582.712912 eV Total energy + Delta-G solvation = -3470.189696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.97518 -41.04824 -39.30122 -36.27669 -35.01526 -34.79018 -32.95075 -32.14202 -31.03930 -29.63472 -28.46375 -25.71803 -23.87565 -23.17463 -22.87439 -22.44264 -21.46292 -20.81450 -19.23593 -18.40942 -18.24520 -17.28053 -16.74321 -16.44077 -16.07067 -15.97902 -15.55505 -15.36071 -15.14649 -15.03050 -14.84555 -14.59952 -14.24589 -13.79987 -13.50464 -13.40603 -12.92820 -12.82858 -12.74130 -12.29270 -12.17265 -12.05142 -11.98482 -11.66681 -11.56797 -11.41125 -11.19730 -10.98879 -10.88000 -10.74783 -10.47329 -10.08759 -9.00346 -7.94903 -5.22273 0.70671 1.33687 1.47174 1.47592 1.53787 1.55968 2.03809 2.14476 2.56018 3.38421 3.51556 3.56242 3.63206 3.75358 3.85293 4.02368 4.10914 4.18355 4.25019 4.29768 4.41343 4.45218 4.51773 4.56529 4.65822 4.75361 5.00552 5.09692 5.14998 5.20244 5.27070 5.33514 5.44704 5.49161 5.49789 5.52761 5.64031 5.89778 6.28378 6.52937 7.14199 7.22233 7.34923 8.10422 8.34444 9.28335 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.002708 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.878131 B =10336.259010 C =10657.910329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.176 3.824 11 H 0.032 0.968 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.115 4.115 15 C 0.162 3.838 16 H 0.062 0.938 17 N -0.706 5.706 18 C 0.495 3.505 19 O -0.569 6.569 20 C 0.112 3.888 21 N -0.377 5.377 22 C 0.263 3.737 23 N -0.578 5.578 24 C 0.183 3.817 25 N -0.336 5.336 26 C -0.113 4.113 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.147 0.853 37 H 0.184 0.816 38 H 0.267 0.733 39 H 0.233 0.767 40 H 0.080 0.920 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -22.207 4.948 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.067 3.933 11 H 0.050 0.950 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.154 4.154 15 C 0.057 3.943 16 H 0.080 0.920 17 N -0.359 5.359 18 C 0.281 3.719 19 O -0.446 6.446 20 C -0.013 4.013 21 N -0.168 5.168 22 C -0.033 4.033 23 N -0.306 5.306 24 C -0.120 4.120 25 N -0.163 5.163 26 C -0.151 4.151 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.258 0.742 36 H 0.164 0.836 37 H 0.201 0.799 38 H 0.283 0.717 39 H 0.249 0.751 40 H 0.098 0.902 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.602 -22.221 4.503 22.729 hybrid contribution -0.217 1.515 -0.156 1.538 sum -1.819 -20.705 4.347 21.235 Atomic orbital electron populations 1.69788 1.06346 1.25960 1.59684 1.25461 0.96363 1.00735 1.03990 0.85241 0.77742 0.80040 0.77373 1.21558 1.22104 1.19811 1.19554 0.91233 0.85384 1.40751 0.91221 1.42549 1.05474 1.00704 1.88694 1.20301 0.93873 0.84954 0.94124 0.94982 1.22100 0.99652 0.96146 0.98756 1.21413 0.98066 0.94038 1.01129 1.21788 1.00432 0.97894 0.95241 1.20660 0.93650 0.86026 0.94012 0.91990 1.45844 1.11346 1.19987 1.58721 1.21167 0.89036 0.83427 0.78306 1.90801 1.16819 1.78236 1.58792 1.22000 0.90421 0.84334 1.04555 1.50159 1.28128 1.28979 1.09542 1.27028 0.96878 0.91138 0.88230 1.70527 1.12305 1.21800 1.25967 1.26474 1.00535 0.98141 0.86861 1.78104 1.05281 1.10128 1.22806 1.21849 0.99092 0.92591 1.01609 0.94029 0.79280 0.94245 0.92539 0.92830 0.90838 0.92672 0.90395 0.74210 0.83567 0.79920 0.71719 0.75055 0.90158 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.70 13.06 21.65 0.28 -57.41 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -12.95 9.93 84.03 0.83 -12.12 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -35.48 5.12 -322.94 -1.65 -37.13 16 10 C 0.18 6.60 2.77 44.99 0.12 6.72 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.13 -4.28 5.50 30.60 0.17 -4.11 16 13 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 14 C -0.11 -2.79 5.50 30.60 0.17 -2.62 16 15 C 0.16 3.97 2.45 44.98 0.11 4.08 16 16 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 17 N -0.71 -11.84 5.08 -442.59 -2.25 -14.08 16 18 C 0.50 9.71 7.83 87.66 0.69 10.40 16 19 O -0.57 -18.06 15.40 -3.04 -0.05 -18.10 16 20 C 0.11 1.03 7.03 85.63 0.60 1.63 16 21 N -0.38 -6.52 3.41 -355.80 -1.21 -7.73 16 22 C 0.26 3.72 12.63 180.36 2.28 6.00 16 23 N -0.58 -12.07 11.19 -204.00 -2.28 -14.35 16 24 C 0.18 3.99 13.03 180.77 2.36 6.35 16 25 N -0.34 -8.40 11.81 -61.25 -0.72 -9.12 16 26 C -0.11 -3.15 4.85 30.58 0.15 -3.00 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.37 19.12 7.80 -92.71 -0.72 18.39 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.42 3.81 8.60 -92.71 -0.80 3.02 16 36 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.18 -0.26 8.09 -2.39 -0.02 -0.27 16 38 H 0.27 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.23 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -82.68 344.56 1.80 -80.88 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.47 Total: 22.39 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 8.12 Total: 6.90 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -7.84 Total: -139.84 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -82.68 1.80 -80.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.057 kcal (2) G-P(sol) polarization free energy of solvation -82.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds