Wall clock time and date at job start Tue Mar 31 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47224 * 299.99235 * 3 2 1 6 6 H 1.48494 * 109.47541 * 59.99341 * 3 2 1 7 7 C 1.38813 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99833 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47068 * 324.99871 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99952 * 10 9 7 13 13 C 1.52996 * 109.46972 * 59.99834 * 12 10 9 14 14 C 1.53001 * 109.47486 * 60.00463 * 13 12 10 15 15 C 1.53002 * 109.46637 * 299.99742 * 14 13 12 16 16 H 1.08993 * 109.47662 * 299.99908 * 15 14 13 17 17 N 1.46504 * 109.46876 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99637 * 85.00417 * 17 15 14 19 19 O 1.21284 * 119.99852 * 359.97438 * 18 17 15 20 20 C 1.50690 * 120.00050 * 180.02562 * 18 17 15 21 21 N 1.46507 * 109.47298 * 179.97438 * 20 18 17 22 22 C 1.34424 * 126.82215 * 124.70868 * 21 20 18 23 23 N 1.30836 * 108.07668 * 179.89106 * 22 21 20 24 24 C 1.33240 * 109.82820 * 0.38351 * 23 22 21 25 25 N 1.30715 * 108.94669 * 359.75918 * 24 23 22 26 26 C 1.52997 * 109.47212 * 204.99811 * 10 9 7 27 27 H 0.97006 * 119.99630 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00533 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 30 30 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 31 31 H 1.09001 * 109.46993 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47298 * 300.00176 * 13 12 10 33 33 H 1.08996 * 109.46778 * 59.99584 * 14 13 12 34 34 H 1.08992 * 109.47514 * 179.97438 * 14 13 12 35 35 H 0.96998 * 120.00342 * 264.99717 * 17 15 14 36 36 H 1.09004 * 109.47281 * 299.99932 * 20 18 17 37 37 H 1.09003 * 109.47881 * 59.99928 * 20 18 17 38 38 H 1.08003 * 125.96624 * 0.03631 * 22 21 20 39 39 H 1.08001 * 125.52917 * 179.72209 * 24 23 22 40 40 H 1.08998 * 109.47533 * 59.99637 * 26 10 9 41 41 H 1.08996 * 109.47853 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 -0.5889 12 6 2.4219 -4.0357 1.4375 13 6 1.1436 -4.1847 2.2649 14 6 0.2663 -5.2801 1.6554 15 6 -0.0976 -4.9012 0.2184 16 1 -0.6425 -3.9573 0.2184 17 7 -0.9372 -5.9503 -0.3655 18 6 -2.2694 -5.9383 -0.1620 19 8 -2.7732 -5.0593 0.5048 20 6 -3.1330 -7.0177 -0.7621 21 7 -4.5324 -6.7825 -0.3977 22 6 -5.5746 -6.6628 -1.2382 23 7 -6.6518 -6.4625 -0.5233 24 6 -6.3373 -6.4397 0.7713 25 7 -5.0506 -6.6312 0.8989 26 6 1.1808 -4.7521 -0.6090 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.9672 -4.9794 1.4375 30 1 3.0469 -3.2554 1.8718 31 1 1.4029 -4.4542 3.2888 32 1 0.5986 -3.2407 2.2649 33 1 0.8113 -6.2240 1.6554 34 1 -0.6441 -5.3866 2.2451 35 1 -0.5342 -6.6534 -0.8986 36 1 -3.0322 -7.0022 -1.8473 37 1 -2.8173 -7.9892 -0.3817 38 1 -5.5308 -6.7239 -2.3156 39 1 -7.0326 -6.2871 1.5835 40 1 0.9214 -4.4823 -1.6327 41 1 1.7258 -5.6960 -0.6095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981502547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:41 Heat of formation + Delta-G solvation = 65.279298 kcal Electronic energy + Delta-G solvation = -23640.571754 eV Core-core repulsion = 20171.687446 eV Total energy + Delta-G solvation = -3468.884309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.13949 -39.92407 -38.06502 -34.58087 -34.11881 -33.06774 -31.26835 -30.96518 -29.78418 -28.27524 -27.50676 -23.69966 -22.84331 -22.07082 -21.92703 -21.56501 -20.45159 -18.70429 -17.62971 -17.31866 -17.20458 -15.95052 -15.74994 -15.10189 -14.94644 -14.62005 -14.47851 -14.10472 -13.79195 -13.65406 -13.58719 -13.15399 -12.96635 -12.32527 -12.09610 -11.91182 -11.79419 -11.41637 -10.93240 -10.85507 -10.75179 -10.38609 -10.21844 -10.16727 -10.10524 -10.09037 -9.87074 -9.79193 -9.54860 -9.41147 -8.97030 -8.80471 -6.94867 -5.74532 -3.04052 1.51803 2.05942 2.54208 2.91582 3.10069 3.43876 3.49156 3.51890 4.19085 4.24374 4.51379 4.59965 4.65781 4.76766 5.07689 5.13876 5.19576 5.44449 5.59418 5.66359 5.69797 5.81186 5.86910 6.05340 6.07189 6.09026 6.16203 6.32202 6.34739 6.41150 6.57366 6.59090 6.64541 6.76964 6.82667 6.99765 7.09442 7.47505 7.71686 7.98589 8.20400 8.43149 9.54367 10.11607 10.45519 11.47679 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.003704 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.616190 B = 7557.862035 C = 8445.461693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.179 3.821 11 H 0.051 0.949 12 C -0.135 4.135 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.147 3.853 16 H 0.099 0.901 17 N -0.722 5.722 18 C 0.494 3.506 19 O -0.501 6.501 20 C 0.111 3.889 21 N -0.369 5.369 22 C 0.254 3.746 23 N -0.546 5.546 24 C 0.191 3.809 25 N -0.287 5.287 26 C -0.127 4.127 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.067 0.933 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -19.621 -3.496 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.068 3.932 11 H 0.069 0.931 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.044 3.956 16 H 0.117 0.883 17 N -0.375 5.375 18 C 0.276 3.724 19 O -0.373 6.373 20 C -0.016 4.016 21 N -0.160 5.160 22 C -0.043 4.043 23 N -0.273 5.273 24 C -0.112 4.112 25 N -0.114 5.114 26 C -0.166 4.166 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.235 0.765 39 H 0.232 0.768 40 H 0.086 0.914 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.094 -18.806 -2.466 19.404 hybrid contribution 0.516 0.621 -0.456 0.927 sum -3.578 -18.185 -2.922 18.763 Atomic orbital electron populations 1.69681 1.05072 1.25556 1.57510 1.24741 0.95445 0.97639 1.03023 0.86164 0.78747 0.84375 0.77169 1.20601 1.21955 1.21921 1.19263 0.90975 0.84126 1.42752 0.91152 1.42519 1.05765 0.99644 1.88524 1.20158 0.93963 0.85948 0.93091 0.93070 1.22181 0.96881 0.99482 0.99030 1.21357 0.96702 0.99286 0.97461 1.21834 0.99665 0.98707 0.95632 1.21093 0.91049 0.91063 0.92406 0.88324 1.46090 1.06363 1.30470 1.54528 1.20366 0.83120 0.86827 0.82055 1.90866 1.72919 1.36124 1.37418 1.21610 0.77679 0.99949 1.02378 1.49977 1.07612 1.53489 1.04941 1.26059 0.82421 0.96784 0.99068 1.70515 1.28735 1.24424 1.03604 1.26015 0.91809 0.98963 0.94429 1.78206 1.11251 1.23162 0.98761 1.22076 0.95377 0.99612 0.99512 0.93533 0.78082 0.93872 0.91979 0.93246 0.90361 0.92775 0.92296 0.77095 0.85285 0.86535 0.76504 0.76769 0.91407 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.47 4.28 -53.42 -0.23 -17.70 16 10 C 0.18 3.33 3.10 -67.93 -0.21 3.12 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.32 5.61 -26.73 -0.15 -2.47 16 13 C -0.11 -1.90 5.76 -26.73 -0.15 -2.06 16 14 C -0.12 -1.83 5.50 -26.73 -0.15 -1.98 16 15 C 0.15 2.27 2.28 -67.92 -0.16 2.12 16 16 H 0.10 2.02 5.94 -51.93 -0.31 1.72 16 17 N -0.72 -8.26 5.08 -53.80 -0.27 -8.54 16 18 C 0.49 6.53 7.83 -10.99 -0.09 6.44 16 19 O -0.50 -9.71 15.40 5.55 0.09 -9.63 16 20 C 0.11 0.90 7.03 -5.19 -0.04 0.86 16 21 N -0.37 -4.29 3.41 -63.81 -0.22 -4.51 16 22 C 0.25 2.58 12.63 -90.66 -1.14 1.43 16 23 N -0.55 -6.99 11.19 -15.83 -0.18 -7.16 16 24 C 0.19 2.47 13.03 -91.81 -1.20 1.27 16 25 N -0.29 -4.23 11.82 29.29 0.35 -3.88 16 26 C -0.13 -1.86 5.08 -26.73 -0.14 -2.00 16 27 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.38 10.11 6.06 -40.82 -0.25 9.86 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 2.84 8.60 -40.82 -0.35 2.49 16 36 H 0.13 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.22 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.22 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -37.79 340.14 -9.21 -47.00 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.92 Total: 9.97 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.66 Total: -0.39 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 0.17 Total: -69.51 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.79 -9.21 -47.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.281 kcal (2) G-P(sol) polarization free energy of solvation -37.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds