Wall clock time and date at job start Tue Mar 31 2020 03:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 120.00027 * 2 1 4 4 H 1.07998 * 119.99760 * 202.99758 * 3 2 1 5 5 C 1.38807 * 119.99771 * 22.99744 * 3 2 1 6 6 N 1.31618 * 120.00210 * 11.63307 * 5 3 2 7 7 Si 1.86805 * 119.99901 * 191.63800 * 5 3 2 8 8 H 1.48498 * 109.47153 * 89.99941 * 7 5 3 9 9 H 1.48494 * 109.46824 * 210.00026 * 7 5 3 10 10 H 1.48503 * 109.46915 * 329.99662 * 7 5 3 11 11 C 1.46499 * 119.99906 * 180.02562 * 2 1 3 12 12 C 1.53035 * 109.46061 * 299.99480 * 11 2 1 13 13 C 1.53194 * 109.31508 * 181.38684 * 12 11 2 14 14 N 1.46919 * 108.77545 * 305.36731 * 13 12 11 15 15 C 1.34778 * 120.62988 * 233.58475 * 14 13 12 16 16 O 1.21279 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99864 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.46837 * 179.97438 * 17 15 14 19 19 C 1.41378 * 128.00401 * 269.67400 * 18 17 15 20 20 N 1.30179 * 106.39303 * 179.89722 * 19 18 17 21 21 O 1.20923 * 111.60157 * 0.39761 * 20 19 18 22 22 C 1.34040 * 111.57134 * 359.73727 * 21 20 19 23 23 C 1.46924 * 118.74035 * 53.86081 * 14 13 12 24 24 C 1.53037 * 109.46439 * 60.06475 * 11 2 1 25 25 H 1.09004 * 109.47123 * 273.84284 * 1 2 3 26 26 H 1.09000 * 109.47733 * 33.84252 * 1 2 3 27 27 H 1.08999 * 109.47295 * 153.85182 * 1 2 3 28 28 H 0.97006 * 120.00066 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.44959 * 180.02562 * 11 2 1 30 30 H 1.08996 * 109.49783 * 61.43631 * 12 11 2 31 31 H 1.09003 * 109.52876 * 301.35455 * 12 11 2 32 32 H 1.09000 * 109.59062 * 185.57951 * 13 12 11 33 33 H 1.08999 * 109.70205 * 65.22499 * 13 12 11 34 34 H 1.09003 * 109.46951 * 59.99799 * 17 15 14 35 35 H 1.09000 * 109.46883 * 299.99908 * 17 15 14 36 36 H 1.07996 * 126.80536 * 0.03797 * 19 18 17 37 37 H 1.07992 * 126.78062 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.58836 * 65.92313 * 23 14 13 39 39 H 1.09004 * 109.58932 * 186.35684 * 23 14 13 40 40 H 1.08998 * 109.49681 * 298.56775 * 24 11 2 41 41 H 1.09004 * 109.49369 * 58.66185 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1653 1.2231 -0.3654 5 6 1.5383 2.3403 0.4697 6 7 0.3978 2.2622 1.1220 7 14 2.3342 4.0045 0.1758 8 1 1.8463 4.5665 -1.1092 9 1 1.9797 4.9255 1.2853 10 1 3.8095 3.8443 0.1177 11 6 2.1974 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2487 13 6 2.6212 -3.3818 1.2624 14 7 2.3849 -4.0910 -0.0024 15 6 1.9587 -5.3696 -0.0035 16 8 1.7671 -5.9459 1.0463 17 6 1.7214 -6.0836 -1.3093 18 6 1.2533 -7.4896 -1.0350 19 6 2.0396 -8.6547 -0.8826 20 7 1.2090 -9.6316 -0.6576 21 8 0.0618 -9.2494 -0.6575 22 6 -0.0184 -7.9306 -0.8836 23 6 2.6279 -3.3818 -1.2660 24 6 1.8288 -2.0698 -1.2513 25 1 -0.3633 0.0689 1.0254 26 1 -0.3634 0.8535 -0.5723 27 1 -0.3634 -0.9225 -0.4529 28 1 -0.0292 3.0689 1.4505 29 1 3.2690 -1.0692 0.0000 30 1 0.7604 -2.2927 1.2363 31 1 2.0685 -1.4910 2.1394 32 1 2.2899 -4.0011 2.0960 33 1 3.6845 -3.1663 1.3674 34 1 2.6495 -6.1148 -1.8802 35 1 0.9608 -5.5520 -1.8810 36 1 3.1160 -8.7208 -0.9390 37 1 -0.9190 -7.3369 -0.9345 38 1 3.6913 -3.1641 -1.3643 39 1 2.3008 -4.0011 -2.1014 40 1 0.7616 -2.2910 -1.2402 41 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985590980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:00 Heat of formation + Delta-G solvation = 54.537068 kcal Electronic energy + Delta-G solvation = -23651.048943 eV Core-core repulsion = 20149.406065 eV Total energy + Delta-G solvation = -3501.642878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.07340 -40.11098 -37.62718 -35.12674 -34.76437 -32.49171 -32.12290 -30.98602 -29.88591 -28.68328 -26.03931 -24.89703 -23.27041 -22.91617 -22.41787 -21.55286 -19.83439 -18.60033 -17.99116 -17.71229 -17.04089 -16.76594 -15.85110 -15.49722 -15.09913 -14.95476 -13.99478 -13.87135 -13.80626 -13.52431 -13.36677 -13.15811 -13.02852 -12.47971 -12.29622 -12.16198 -11.75064 -11.50021 -11.41285 -10.98832 -10.89157 -10.82967 -10.51581 -10.42417 -10.27306 -10.17806 -9.94186 -9.88477 -9.66341 -9.43790 -8.60789 -8.50477 -6.78691 -5.75309 -3.22132 1.34502 2.05552 2.61458 3.02348 3.17810 3.35144 3.41460 3.42970 4.09972 4.44209 4.48241 4.51137 4.62575 4.90607 5.00238 5.16120 5.18367 5.32475 5.37234 5.42500 5.46078 5.48974 5.56265 5.72653 5.83208 5.84811 5.97950 6.10808 6.20534 6.32001 6.48891 6.56665 6.75041 6.93312 6.96757 7.36077 7.46334 7.70590 7.77634 8.07898 8.18624 8.37115 9.20839 9.84141 10.33370 11.29406 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.042765 B = 0.002977 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.584979 B = 9401.847190 C = 9478.887402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.114 3.886 14 N -0.605 5.605 15 C 0.513 3.487 16 O -0.542 6.542 17 C -0.064 4.064 18 C -0.183 4.183 19 C 0.004 3.996 20 N -0.368 5.368 21 O 0.095 5.905 22 C -0.044 4.044 23 C 0.108 3.892 24 C -0.148 4.148 25 H 0.027 0.973 26 H 0.042 0.958 27 H -0.004 1.004 28 H 0.252 0.748 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.187 0.813 37 H 0.216 0.784 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -16.205 -7.454 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.070 3.930 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.339 5.339 15 C 0.301 3.699 16 O -0.420 6.420 17 C -0.104 4.104 18 C -0.188 4.188 19 C -0.175 4.175 20 N -0.072 5.072 21 O 0.031 5.969 22 C -0.126 4.126 23 C -0.016 4.016 24 C -0.188 4.188 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.205 0.795 37 H 0.232 0.768 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.125 -17.654 -6.584 18.961 hybrid contribution 0.498 2.086 -0.239 2.157 sum 2.623 -15.569 -6.823 17.199 Atomic orbital electron populations 1.20731 0.82767 0.95376 0.99103 1.43953 1.01778 1.00171 1.85872 1.19224 0.98293 0.85525 1.35505 0.91424 1.25038 0.97802 0.98540 0.98255 1.70067 1.18519 1.27163 1.39461 0.86255 0.78779 0.84164 0.77319 1.21540 1.21774 1.20520 1.20277 0.96013 0.86072 0.90589 1.22497 0.99949 0.94398 1.01575 1.21699 0.99804 0.93786 0.85594 1.48181 1.65801 1.11654 1.08228 1.20410 0.77053 0.81542 0.90942 1.90704 1.51818 1.65922 1.33515 1.19946 1.03998 0.89884 0.96600 1.20773 0.92892 0.96438 1.08672 1.24893 1.01977 0.88431 1.02230 1.73849 0.89955 1.24560 1.18878 1.84799 1.23210 1.22960 1.65907 1.25785 1.00510 0.84489 1.01782 1.21947 1.00527 0.94274 0.84815 1.22563 1.00069 0.94709 1.01471 0.95511 0.93926 0.98514 0.93753 0.91930 0.92266 0.90640 0.89716 0.91753 0.87451 0.87326 0.79542 0.76790 0.91184 0.90349 0.91880 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.03 59.84 0.48 4.38 16 2 N -0.60 -14.04 2.81 -173.45 -0.49 -14.53 16 3 C -0.26 -6.72 9.59 -15.06 -0.14 -6.87 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.91 -25.89 10.64 55.49 0.59 -25.30 16 7 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.18 3.30 2.55 -67.89 -0.17 3.12 16 12 C -0.14 -2.49 5.34 -26.61 -0.14 -2.63 16 13 C 0.11 1.65 6.43 -3.71 -0.02 1.63 16 14 N -0.61 -7.74 2.97 -172.50 -0.51 -8.25 16 15 C 0.51 6.62 7.69 -10.98 -0.08 6.54 16 16 O -0.54 -9.19 15.45 5.56 0.09 -9.10 16 17 C -0.06 -0.55 4.63 -29.03 -0.13 -0.69 16 18 C -0.18 -1.85 4.82 -104.42 -0.50 -2.36 16 19 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 20 N -0.37 -4.61 12.07 30.35 0.37 -4.24 16 21 O 0.10 1.08 11.20 17.18 0.19 1.28 16 22 C -0.04 -0.41 12.26 29.74 0.36 -0.05 16 23 C 0.11 1.16 6.37 -3.49 -0.02 1.13 16 24 C -0.15 -2.14 5.34 -26.39 -0.14 -2.28 16 25 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 26 H 0.04 1.10 7.22 -51.93 -0.37 0.72 16 27 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 30 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.32 7.01 -51.93 -0.36 0.95 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 0.68 7.93 -51.93 -0.41 0.27 16 35 H 0.11 0.72 7.70 -51.93 -0.40 0.32 16 36 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.22 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -32.83 333.14 -6.41 -39.24 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.82 Total: -2.11 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.82 Total: 1.73 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.04 Total: -52.32 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.28 Total: -7.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.83 -6.41 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985590980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.773 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds