Wall clock time and date at job start Tue Mar 31 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36596 * 126.57767 * 2 1 4 4 C 1.47517 * 125.77404 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00200 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00000 * 180.02562 * 4 3 2 7 7 C 1.47433 * 125.64971 * 359.68631 * 6 4 3 8 8 C 1.55130 * 104.71975 * 155.81761 * 7 6 4 9 9 C 1.55153 * 101.48732 * 37.30097 * 8 7 6 10 10 H 1.09004 * 110.72399 * 82.69185 * 9 8 7 11 11 N 1.46496 * 110.87331 * 205.89767 * 9 8 7 12 12 C 1.36948 * 119.99892 * 268.60737 * 11 9 8 13 13 H 1.08000 * 119.99691 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00077 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00097 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00018 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.46822 * 89.99924 * 16 14 12 18 18 H 1.48497 * 109.46996 * 209.99912 * 16 14 12 19 19 H 1.48496 * 109.46976 * 329.99943 * 16 14 12 20 20 C 1.47020 * 125.64931 * 179.97438 * 6 4 3 21 21 H 1.09005 * 109.88094 * 61.60431 * 20 6 4 22 22 C 1.52998 * 109.88547 * 300.59339 * 20 6 4 23 23 N 1.34405 * 108.45326 * 179.97438 * 3 2 1 24 24 N 1.28755 * 109.52720 * 359.97438 * 23 3 2 25 25 N 1.34807 * 126.57891 * 179.97438 * 2 1 3 26 26 C 1.46507 * 126.59526 * 0.26302 * 25 2 1 27 27 H 1.09000 * 109.47339 * 270.02869 * 1 2 3 28 28 H 1.08996 * 109.47024 * 30.02469 * 1 2 3 29 29 H 1.08991 * 109.47061 * 150.02426 * 1 2 3 30 30 H 1.08999 * 110.36631 * 274.75032 * 7 6 4 31 31 H 1.08999 * 110.36206 * 37.07251 * 7 6 4 32 32 H 1.08996 * 111.19570 * 279.19148 * 8 7 6 33 33 H 1.09008 * 110.93384 * 155.29144 * 8 7 6 34 34 H 0.97000 * 120.00658 * 88.61029 * 11 9 8 35 35 H 0.96991 * 119.99739 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46921 * 61.45376 * 22 20 6 37 37 H 1.08996 * 109.47510 * 181.45289 * 22 20 6 38 38 H 1.08998 * 109.46887 * 301.45760 * 22 20 6 39 39 H 1.09001 * 109.46724 * 269.71001 * 26 25 2 40 40 H 1.09002 * 109.46973 * 29.71507 * 26 25 2 41 41 H 1.08999 * 109.46931 * 149.71453 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7628 0.0006 6 7 2.7817 3.4987 0.0000 7 6 4.2460 3.3266 0.0053 8 6 4.7992 4.6378 -0.6122 9 6 3.8221 5.6913 -0.0268 10 1 4.1233 5.9791 0.9804 11 7 3.7396 6.8670 -0.8970 12 6 4.5782 7.9302 -0.6926 13 1 5.3000 7.9021 0.1103 14 6 4.5005 9.0440 -1.5174 15 7 5.3068 10.0657 -1.3213 16 14 3.2515 9.0929 -2.9057 17 1 1.9817 9.6808 -2.4085 18 1 3.7797 9.9235 -4.0176 19 1 3.0004 7.7133 -3.3943 20 6 2.4761 4.9368 -0.0002 21 1 1.9226 5.1982 0.9018 22 6 1.6511 5.2934 -1.2383 23 7 3.5984 0.6788 0.0006 24 7 3.6299 -0.6083 0.0015 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 -0.0043 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8901 -0.5134 30 1 4.6095 3.2019 1.0253 31 1 4.5295 2.4704 -0.6067 32 1 4.7433 4.6151 -1.7004 33 1 5.8203 4.8246 -0.2793 34 1 3.0911 6.8925 -1.6178 35 1 5.2522 10.8441 -1.8974 36 1 0.7081 4.7471 -1.2162 37 1 1.4503 6.3647 -1.2451 38 1 2.2071 5.0222 -2.1358 39 1 1.7823 -2.8365 1.0222 40 1 0.9287 -2.5731 -0.5174 41 1 2.6325 -3.0883 -0.5212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986095603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:49 Heat of formation + Delta-G solvation = 93.280641 kcal Electronic energy + Delta-G solvation = -23977.260447 eV Core-core repulsion = 20509.590368 eV Total energy + Delta-G solvation = -3467.670079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.44373 -39.81119 -37.50746 -35.24559 -34.19735 -32.56798 -31.70152 -30.71370 -29.65550 -28.04429 -27.75024 -25.36494 -24.08315 -22.90063 -22.11881 -21.28374 -19.83540 -18.90476 -17.93703 -17.46042 -16.69673 -16.05668 -15.66350 -15.49920 -14.60855 -14.44611 -14.15952 -13.98880 -13.82059 -13.54143 -13.33799 -13.27138 -12.87517 -12.81368 -12.56770 -12.22587 -12.06367 -11.85043 -11.70662 -11.39134 -11.22141 -11.06025 -10.78356 -10.48602 -10.39218 -10.26416 -10.00807 -9.81037 -9.53734 -9.31097 -8.92774 -8.38400 -7.28720 -5.78045 -3.14308 0.91290 1.63607 1.77828 3.08604 3.32433 3.37844 3.40728 3.45898 3.99623 4.04640 4.33149 4.48579 4.53304 4.58405 4.78180 4.96143 5.10594 5.13245 5.18269 5.31249 5.39254 5.47872 5.57194 5.61437 5.68757 5.71653 5.84216 5.95865 6.05906 6.15105 6.23112 6.29706 6.46759 6.59468 6.65783 6.66446 6.91922 7.67680 7.79303 7.98033 8.27165 8.41024 9.18710 9.90916 10.10119 11.40046 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.003660 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.241996 B = 7648.682624 C = 8118.632713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.120 3.880 3 C -0.096 4.096 4 C 0.615 3.385 5 O -0.543 6.543 6 N -0.593 5.593 7 C 0.099 3.901 8 C -0.154 4.154 9 C 0.179 3.821 10 H 0.076 0.924 11 N -0.741 5.741 12 C -0.246 4.246 13 H 0.092 0.908 14 C 0.008 3.992 15 N -0.932 5.932 16 Si 0.878 3.122 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.276 1.276 20 C 0.127 3.873 21 H 0.077 0.923 22 C -0.163 4.163 23 N -0.197 5.197 24 N -0.073 5.073 25 N -0.367 5.367 26 C 0.088 3.912 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.367 0.633 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -26.082 2.891 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.236 4.236 4 C 0.402 3.598 5 O -0.421 6.421 6 N -0.325 5.325 7 C -0.024 4.024 8 C -0.195 4.195 9 C 0.068 3.932 10 H 0.094 0.906 11 N -0.385 5.385 12 C -0.376 4.376 13 H 0.110 0.890 14 C -0.188 4.188 15 N -0.579 5.579 16 Si 0.708 3.292 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.202 1.202 20 C 0.023 3.977 21 H 0.095 0.905 22 C -0.221 4.221 23 N -0.070 5.070 24 N -0.053 5.053 25 N -0.153 5.153 26 C -0.053 4.053 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.203 0.797 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.623 -26.234 2.970 27.774 hybrid contribution -1.614 0.084 -1.048 1.926 sum -10.237 -26.150 1.922 28.148 Atomic orbital electron populations 1.20710 0.84659 1.05320 1.04611 1.21891 0.96206 0.86319 0.97393 1.21212 0.88904 0.95379 1.18062 1.16296 0.84759 0.81787 0.76981 1.90730 1.15523 1.83296 1.52551 1.48315 1.07491 1.06005 1.70640 1.22630 0.78610 0.99783 1.01398 1.23572 1.00793 0.93972 1.01178 1.21170 0.90228 0.86544 0.95302 0.90638 1.42957 1.43771 1.15966 1.35772 1.19086 1.12351 0.92677 1.13452 0.88994 1.24644 0.98865 0.96300 0.99023 1.69692 1.40240 1.06946 1.41040 0.86656 0.82008 0.77406 0.83137 1.20864 1.21615 1.20225 1.21916 0.98164 0.78612 0.98994 0.90479 1.22059 1.00355 1.02224 0.97424 1.74705 1.19006 1.03669 1.09579 1.82011 0.95919 1.03806 1.23527 1.50271 1.06573 1.07676 1.50805 1.22145 1.02369 0.76179 1.04628 0.89045 0.86878 0.90834 0.91465 0.89294 0.90952 0.90108 0.79673 0.92996 0.91505 0.90984 0.92579 0.89310 0.88621 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.57 36.01 0.34 -0.36 16 2 C 0.12 1.29 7.02 -81.88 -0.57 0.71 16 3 C -0.10 -1.36 6.84 -83.55 -0.57 -1.93 16 4 C 0.62 9.83 7.63 -12.48 -0.10 9.74 16 5 O -0.54 -9.23 13.60 5.28 0.07 -9.16 16 6 N -0.59 -9.63 3.08 -164.09 -0.51 -10.13 16 7 C 0.10 1.50 6.14 -2.40 -0.01 1.48 16 8 C -0.15 -2.63 6.79 -24.46 -0.17 -2.80 16 9 C 0.18 3.42 3.48 -66.10 -0.23 3.19 16 10 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 11 N -0.74 -17.23 4.76 -51.65 -0.25 -17.47 16 12 C -0.25 -6.80 10.44 -15.05 -0.16 -6.96 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 15 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 16 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 19 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 20 C 0.13 2.21 3.47 -66.95 -0.23 1.98 16 21 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 22 C -0.16 -2.87 7.93 37.16 0.29 -2.58 16 23 N -0.20 -2.85 9.39 32.85 0.31 -2.54 16 24 N -0.07 -0.95 13.78 60.35 0.83 -0.12 16 25 N -0.37 -3.50 4.03 -63.58 -0.26 -3.75 16 26 C 0.09 0.34 11.33 59.85 0.68 1.01 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 1.08 6.43 -51.93 -0.33 0.75 16 29 H 0.07 0.31 7.18 -51.93 -0.37 -0.06 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.34 6.12 -51.93 -0.32 1.02 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.37 8.46 2.94 -40.82 -0.12 8.34 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 1.15 6.73 -51.93 -0.35 0.80 16 37 H 0.07 1.32 6.81 -51.93 -0.35 0.97 16 38 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 0.14 7.15 -51.93 -0.37 -0.24 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -34.17 330.05 -5.19 -39.35 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.61 Total: 6.20 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.82 Total: 3.63 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.91 Total: -62.28 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.17 -5.19 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986095603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.633 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds