Wall clock time and date at job start Tue Mar 31 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36596 * 126.57767 * 2 1 4 4 C 1.47517 * 125.77404 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00200 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00000 * 180.02562 * 4 3 2 7 7 C 1.47433 * 125.64971 * 359.68631 * 6 4 3 8 8 C 1.55130 * 104.71975 * 155.81761 * 7 6 4 9 9 C 1.55153 * 101.48732 * 37.30097 * 8 7 6 10 10 H 1.09004 * 110.72399 * 82.69185 * 9 8 7 11 11 N 1.46496 * 110.87331 * 205.89767 * 9 8 7 12 12 C 1.36948 * 119.99892 * 268.60737 * 11 9 8 13 13 H 1.08000 * 119.99691 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00077 * 179.97438 * 12 11 9 15 15 N 1.31621 * 120.00097 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00018 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.46822 * 89.99924 * 16 14 12 18 18 H 1.48497 * 109.46996 * 209.99912 * 16 14 12 19 19 H 1.48496 * 109.46976 * 329.99943 * 16 14 12 20 20 C 1.47020 * 125.64931 * 179.97438 * 6 4 3 21 21 H 1.09005 * 109.88094 * 61.60431 * 20 6 4 22 22 C 1.52998 * 109.88547 * 300.59339 * 20 6 4 23 23 N 1.34405 * 108.45326 * 179.97438 * 3 2 1 24 24 N 1.28755 * 109.52720 * 359.97438 * 23 3 2 25 25 N 1.34807 * 126.57891 * 179.97438 * 2 1 3 26 26 C 1.46507 * 126.59526 * 0.26302 * 25 2 1 27 27 H 1.09000 * 109.47339 * 270.02869 * 1 2 3 28 28 H 1.08996 * 109.47024 * 30.02469 * 1 2 3 29 29 H 1.08991 * 109.47061 * 150.02426 * 1 2 3 30 30 H 1.08999 * 110.36631 * 274.75032 * 7 6 4 31 31 H 1.08999 * 110.36206 * 37.07251 * 7 6 4 32 32 H 1.08996 * 111.19570 * 279.19148 * 8 7 6 33 33 H 1.09008 * 110.93384 * 155.29144 * 8 7 6 34 34 H 0.97000 * 120.00658 * 88.61029 * 11 9 8 35 35 H 0.96991 * 119.99739 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46921 * 61.45376 * 22 20 6 37 37 H 1.08996 * 109.47510 * 181.45289 * 22 20 6 38 38 H 1.08998 * 109.46887 * 301.45760 * 22 20 6 39 39 H 1.09001 * 109.46724 * 269.71001 * 26 25 2 40 40 H 1.09002 * 109.46973 * 29.71507 * 26 25 2 41 41 H 1.08999 * 109.46931 * 149.71453 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7628 0.0006 6 7 2.7817 3.4987 0.0000 7 6 4.2460 3.3266 0.0053 8 6 4.7992 4.6378 -0.6122 9 6 3.8221 5.6913 -0.0268 10 1 4.1233 5.9791 0.9804 11 7 3.7396 6.8670 -0.8970 12 6 4.5782 7.9302 -0.6926 13 1 5.3000 7.9021 0.1103 14 6 4.5005 9.0440 -1.5174 15 7 5.3068 10.0657 -1.3213 16 14 3.2515 9.0929 -2.9057 17 1 1.9817 9.6808 -2.4085 18 1 3.7797 9.9235 -4.0176 19 1 3.0004 7.7133 -3.3943 20 6 2.4761 4.9368 -0.0002 21 1 1.9226 5.1982 0.9018 22 6 1.6511 5.2934 -1.2383 23 7 3.5984 0.6788 0.0006 24 7 3.6299 -0.6083 0.0015 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 -0.0043 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8901 -0.5134 30 1 4.6095 3.2019 1.0253 31 1 4.5295 2.4704 -0.6067 32 1 4.7433 4.6151 -1.7004 33 1 5.8203 4.8246 -0.2793 34 1 3.0911 6.8925 -1.6178 35 1 5.2522 10.8441 -1.8974 36 1 0.7081 4.7471 -1.2162 37 1 1.4503 6.3647 -1.2451 38 1 2.2071 5.0222 -2.1358 39 1 1.7823 -2.8365 1.0222 40 1 0.9287 -2.5731 -0.5174 41 1 2.6325 -3.0883 -0.5212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986095603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:47 Heat of formation + Delta-G solvation = 68.811325 kcal Electronic energy + Delta-G solvation = -23978.321517 eV Core-core repulsion = 20509.590368 eV Total energy + Delta-G solvation = -3468.731148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -43.32017 -41.12278 -38.88237 -36.22103 -35.74384 -33.71303 -33.26489 -32.10969 -31.22745 -28.91730 -28.33929 -26.91590 -25.42639 -24.58575 -23.29380 -22.16285 -21.07642 -20.32093 -19.85188 -18.60741 -17.54132 -17.07463 -17.03833 -16.67827 -16.28385 -15.80816 -15.40685 -15.25180 -14.80068 -14.67382 -14.29851 -14.13134 -14.04289 -13.95955 -13.64026 -13.57120 -13.23316 -13.12642 -13.06400 -12.96758 -12.85897 -12.55593 -12.22864 -12.02606 -11.91764 -11.73024 -11.51360 -11.15180 -11.01252 -10.94972 -10.25010 -9.66209 -9.31357 -8.01141 -5.34898 0.10681 0.59114 1.13149 1.38173 1.40098 1.46756 1.87709 2.18546 2.48492 3.10599 3.28800 3.37165 3.53507 3.62294 3.65205 3.76415 3.90205 4.14005 4.29363 4.33158 4.36810 4.37117 4.48314 4.57007 4.61556 4.66047 4.67306 4.82001 4.84002 4.94228 5.04308 5.11027 5.14659 5.23491 5.30092 5.44394 5.52751 5.79160 6.22759 6.44979 6.81494 7.06773 7.09659 7.82239 8.01666 9.20116 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.003660 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.241996 B = 7648.682624 C = 8118.632713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.130 4.130 4 C 0.614 3.386 5 O -0.557 6.557 6 N -0.598 5.598 7 C 0.113 3.887 8 C -0.146 4.146 9 C 0.171 3.829 10 H 0.072 0.928 11 N -0.743 5.743 12 C -0.227 4.227 13 H 0.064 0.936 14 C -0.059 4.059 15 N -0.981 5.981 16 Si 0.941 3.059 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.255 1.255 20 C 0.134 3.866 21 H 0.079 0.921 22 C -0.155 4.155 23 N -0.219 5.219 24 N -0.095 5.095 25 N -0.353 5.353 26 C 0.073 3.927 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.370 0.630 35 H 0.258 0.742 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 -29.333 2.540 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.270 4.270 4 C 0.402 3.598 5 O -0.436 6.436 6 N -0.330 5.330 7 C -0.010 4.010 8 C -0.187 4.187 9 C 0.061 3.939 10 H 0.090 0.910 11 N -0.388 5.388 12 C -0.358 4.358 13 H 0.082 0.918 14 C -0.250 4.250 15 N -0.632 5.632 16 Si 0.769 3.231 17 H -0.202 1.202 18 H -0.222 1.222 19 H -0.180 1.180 20 C 0.030 3.970 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.092 5.092 24 N -0.075 5.075 25 N -0.139 5.139 26 C -0.066 4.066 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.207 0.793 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.660 -29.587 2.636 31.559 hybrid contribution -1.005 0.901 -0.838 1.589 sum -11.665 -28.686 1.798 31.019 Atomic orbital electron populations 1.20826 0.82181 1.06254 1.05709 1.22306 0.97434 0.85675 0.95241 1.21136 0.89750 0.95119 1.20949 1.16569 0.84465 0.82482 0.76236 1.90713 1.15981 1.83765 1.53180 1.48320 1.07910 1.05475 1.71266 1.22526 0.78038 0.98535 1.01880 1.23416 1.00459 0.94238 1.00547 1.21328 0.92110 0.85889 0.94536 0.90970 1.42916 1.43145 1.16150 1.36572 1.19054 1.11444 0.93569 1.11759 0.91774 1.25385 1.01347 0.96183 1.02125 1.69859 1.42743 1.07875 1.42692 0.85619 0.79470 0.78280 0.79737 1.20199 1.22168 1.18005 1.21693 0.96787 0.79461 0.99087 0.90321 1.21977 1.00490 1.01716 0.97179 1.74639 1.19590 1.04538 1.10451 1.81902 0.97972 1.03290 1.24297 1.50613 1.05230 1.09346 1.48685 1.22723 1.04136 0.73108 1.06642 0.87649 0.88936 0.86847 0.90408 0.88797 0.91867 0.89838 0.79339 0.93341 0.91007 0.91706 0.93071 0.87266 0.85427 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.57 71.24 0.68 -0.37 16 2 C 0.13 2.52 7.02 41.72 0.29 2.81 16 3 C -0.13 -3.48 6.84 40.81 0.28 -3.20 16 4 C 0.61 19.01 7.63 86.69 0.66 19.67 16 5 O -0.56 -18.33 13.60 -4.02 -0.05 -18.38 16 6 N -0.60 -18.91 3.08 -791.33 -2.44 -21.35 16 7 C 0.11 3.33 6.14 86.93 0.53 3.87 16 8 C -0.15 -4.93 6.79 32.06 0.22 -4.71 16 9 C 0.17 6.51 3.48 46.18 0.16 6.67 16 10 H 0.07 2.80 8.09 -2.38 -0.02 2.78 16 11 N -0.74 -34.40 4.76 -317.32 -1.51 -35.91 16 12 C -0.23 -12.77 10.44 84.03 0.88 -11.89 16 13 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 14 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 15 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 16 Si 0.94 45.61 27.74 68.60 1.90 47.51 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 20 C 0.13 4.57 3.47 45.34 0.16 4.72 16 21 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 22 C -0.16 -5.33 7.93 71.98 0.57 -4.76 16 23 N -0.22 -6.14 9.39 -50.00 -0.47 -6.61 16 24 N -0.10 -2.31 13.78 37.02 0.51 -1.80 16 25 N -0.35 -5.69 4.03 -355.08 -1.43 -7.12 16 26 C 0.07 0.25 11.33 127.77 1.45 1.70 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.56 6.43 -2.39 -0.02 1.54 16 29 H 0.11 0.39 7.18 -2.39 -0.02 0.37 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.75 6.12 -2.39 -0.01 2.74 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.37 16.68 2.94 -92.71 -0.27 16.40 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.07 2.38 6.73 -2.39 -0.02 2.37 16 37 H 0.06 2.30 6.81 -2.39 -0.02 2.29 16 38 H 0.05 1.78 8.02 -2.39 -0.02 1.76 16 39 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.13 -0.32 7.15 -2.39 -0.02 -0.34 16 41 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -75.51 330.05 3.89 -71.63 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.72 Total: 22.95 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.35 Total: 11.53 kcal Atomic # 7 Polarization: -130.20 SS G_CDS: -5.04 Total: -135.24 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -75.51 3.89 -71.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986095603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.438 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds