Wall clock time and date at job start Tue Mar 31 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30828 * 125.96233 * 2 1 4 4 C 1.33240 * 109.82915 * 180.19659 * 3 2 1 5 5 C 1.50699 * 125.52490 * 179.85427 * 4 3 2 6 6 C 1.50698 * 109.47078 * 269.71176 * 5 4 3 7 7 O 1.21283 * 120.00031 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.47423 * 125.65136 * 359.94184 * 8 6 5 10 10 C 1.54907 * 104.83389 * 155.92354 * 9 8 6 11 11 C 1.55154 * 101.58028 * 37.00608 * 10 9 8 12 12 H 1.09002 * 110.71758 * 82.86829 * 11 10 9 13 13 N 1.46504 * 110.72115 * 206.13249 * 11 10 9 14 14 C 1.36935 * 120.00499 * 268.52945 * 13 11 10 15 15 H 1.08004 * 119.99410 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00015 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00384 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99707 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47165 * 89.99832 * 18 16 14 20 20 H 1.48498 * 109.47111 * 209.99691 * 18 16 14 21 21 H 1.48496 * 109.47327 * 329.99786 * 18 16 14 22 22 C 1.47026 * 125.64538 * 179.97438 * 8 6 5 23 23 H 1.09005 * 110.01070 * 61.52249 * 22 8 6 24 24 C 1.52997 * 109.88309 * 300.42781 * 22 8 6 25 25 N 1.30712 * 108.94530 * 359.58059 * 4 3 2 26 26 N 1.34432 * 125.95979 * 179.74892 * 2 1 3 27 27 H 0.96999 * 126.81870 * 359.92875 * 26 2 1 28 28 H 1.09003 * 109.47131 * 270.24590 * 1 2 3 29 29 H 1.08999 * 109.47256 * 30.25211 * 1 2 3 30 30 H 1.08998 * 109.47088 * 150.24749 * 1 2 3 31 31 H 1.09005 * 109.46687 * 149.71277 * 5 4 3 32 32 H 1.09001 * 109.47490 * 29.71288 * 5 4 3 33 33 H 1.09001 * 110.36690 * 37.08054 * 9 8 6 34 34 H 1.08999 * 110.45546 * 274.80806 * 9 8 6 35 35 H 1.09000 * 111.00056 * 278.93619 * 10 9 8 36 36 H 1.08999 * 111.03738 * 155.09946 * 10 9 8 37 37 H 0.97002 * 119.99396 * 88.52547 * 13 11 10 38 38 H 0.96998 * 120.00318 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47153 * 302.19087 * 24 22 8 40 40 H 1.09001 * 109.46832 * 182.19278 * 24 22 8 41 41 H 1.09004 * 109.47261 * 62.19259 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0043 5 6 4.7372 1.6236 -0.0088 6 6 5.1307 1.9290 -1.4311 7 8 4.5125 1.4356 -2.3506 8 7 6.1702 2.7495 -1.6813 9 6 7.0045 3.4143 -0.6638 10 6 8.3505 3.6960 -1.3768 11 6 7.8747 4.0591 -2.8083 12 1 7.5741 5.1055 -2.8609 13 7 8.9212 3.7689 -3.7916 14 6 9.8228 4.7393 -4.1386 15 1 9.7621 5.7189 -3.6877 16 6 10.8140 4.4645 -5.0707 17 7 10.8877 3.2709 -5.6206 18 14 12.0434 5.7886 -5.5446 19 1 13.2200 5.7179 -4.6411 20 1 12.4830 5.5768 -6.9471 21 1 11.4049 7.1236 -5.4222 22 6 6.6596 3.1304 -3.0144 23 1 5.8785 3.6582 -3.5618 24 6 7.0844 1.8814 -3.7892 25 7 3.6194 -0.6168 0.0019 26 7 2.2965 -1.0881 0.0048 27 1 2.0093 -2.0146 0.0098 28 1 -0.3633 0.0044 1.0277 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 5.5745 1.1531 0.5068 32 1 4.4703 2.5493 0.5011 33 1 7.1583 2.7550 0.1904 34 1 6.5424 4.3480 -0.3430 35 1 8.9802 2.8064 -1.3883 36 1 8.8707 4.5344 -0.9136 37 1 8.9754 2.8892 -4.1967 38 1 11.5805 3.0787 -6.2716 39 1 7.8524 1.3492 -3.2278 40 1 7.4821 2.1744 -4.7609 41 1 6.2215 1.2307 -3.9310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986253746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:27 Heat of formation + Delta-G solvation = 43.387480 kcal Electronic energy + Delta-G solvation = -23364.690361 eV Core-core repulsion = 19894.856751 eV Total energy + Delta-G solvation = -3469.833609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.18207 -41.24049 -38.89894 -35.91714 -34.73474 -33.48187 -33.36283 -32.11569 -31.36418 -29.97788 -28.56796 -26.76729 -25.43266 -24.04301 -22.66875 -21.87995 -20.79673 -19.89548 -19.44208 -18.86814 -18.23772 -17.08152 -16.80578 -16.54698 -16.33863 -15.75604 -15.54488 -15.17110 -14.88082 -14.64852 -14.29815 -13.86524 -13.68718 -13.64857 -13.51891 -13.35396 -13.12186 -12.96395 -12.89120 -12.82144 -12.74139 -12.52789 -12.05164 -12.03705 -11.59066 -11.50387 -11.25580 -11.11596 -10.90309 -10.85608 -10.45938 -9.65617 -8.99680 -7.92171 -5.21189 0.55321 1.50288 1.51857 1.56985 1.59995 1.60748 1.73746 2.15187 2.59388 2.99777 3.38168 3.50760 3.57693 3.80344 3.84881 3.95019 3.99884 4.22244 4.34748 4.39431 4.41838 4.45941 4.59114 4.67655 4.71203 4.74859 4.83244 4.89442 5.04958 5.07254 5.21395 5.23727 5.29414 5.31796 5.37571 5.52992 5.57481 6.20582 6.29337 6.56507 7.05683 7.12843 7.36457 8.10493 8.33810 9.31652 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.002880 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.793121 B = 9719.896855 C = 9940.109493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.567 5.567 4 C 0.237 3.763 5 C -0.037 4.037 6 C 0.532 3.468 7 O -0.582 6.582 8 N -0.606 5.606 9 C 0.101 3.899 10 C -0.145 4.145 11 C 0.166 3.834 12 H 0.072 0.928 13 N -0.733 5.733 14 C -0.237 4.237 15 H 0.083 0.917 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.301 1.301 21 H -0.267 1.267 22 C 0.134 3.866 23 H 0.061 0.939 24 C -0.142 4.142 25 N -0.340 5.340 26 N -0.476 5.476 27 H 0.455 0.545 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.379 0.621 38 H 0.250 0.750 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 -5.005 17.930 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 N -0.298 5.298 4 C -0.047 4.047 5 C -0.079 4.079 6 C 0.321 3.679 7 O -0.462 6.462 8 N -0.340 5.340 9 C -0.021 4.021 10 C -0.186 4.186 11 C 0.056 3.944 12 H 0.090 0.910 13 N -0.375 5.375 14 C -0.368 4.368 15 H 0.101 0.899 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.228 1.228 21 H -0.192 1.192 22 C 0.030 3.970 23 H 0.079 0.921 24 C -0.201 4.201 25 N -0.169 5.169 26 N -0.196 5.196 27 H 0.303 0.697 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.215 0.785 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.286 -5.171 17.456 26.522 hybrid contribution 0.762 -0.602 -1.125 1.486 sum -18.524 -5.772 16.331 25.360 Atomic orbital electron populations 1.20648 0.79960 1.06318 1.06301 1.25280 0.98356 0.81989 0.93627 1.70287 1.01548 1.31318 1.26630 1.23630 0.93435 0.90041 0.97551 1.19970 0.93967 1.00042 0.93926 1.20393 0.78603 0.77415 0.91486 1.90684 1.54409 1.52969 1.48186 1.48549 1.30694 1.46473 1.08287 1.22643 0.89576 0.98926 0.90940 1.23368 0.96417 1.02125 0.96712 1.21402 0.86902 0.96419 0.89694 0.91022 1.42852 1.32439 1.13700 1.48471 1.19684 1.05697 0.93878 1.17575 0.89894 1.25569 1.02036 0.98880 1.00498 1.69829 1.36856 1.22262 1.33391 0.85131 0.79137 0.79014 0.76408 1.21413 1.22842 1.19188 1.21596 0.96140 0.95378 0.83923 0.92060 1.21797 1.00238 0.97774 1.00241 1.77871 0.98926 1.12620 1.27532 1.47863 1.03230 1.11022 1.57456 0.69673 0.86598 0.88507 0.87192 0.84188 0.83274 0.87605 0.88191 0.92610 0.89002 0.78496 0.94166 0.93317 0.92564 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.29 5.48 8.24 138.23 1.14 6.62 16 3 N -0.57 -15.19 11.19 -179.72 -2.01 -17.20 16 4 C 0.24 6.61 6.63 138.63 0.92 7.53 16 5 C -0.04 -0.85 5.33 29.10 0.16 -0.70 16 6 C 0.53 16.80 7.62 87.66 0.67 17.47 16 7 O -0.58 -23.96 14.94 -3.04 -0.05 -24.00 16 8 N -0.61 -18.02 3.08 -788.06 -2.43 -20.45 16 9 C 0.10 2.18 6.69 86.85 0.58 2.76 16 10 C -0.15 -4.33 6.77 31.98 0.22 -4.11 16 11 C 0.17 6.25 3.48 46.18 0.16 6.41 16 12 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 13 N -0.73 -35.97 4.94 -317.34 -1.57 -37.54 16 14 C -0.24 -12.69 9.96 84.03 0.84 -11.85 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -59.59 13.06 21.65 0.28 -59.30 16 18 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.13 4.91 3.48 45.34 0.16 5.07 16 23 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 24 C -0.14 -5.82 7.93 71.98 0.57 -5.25 16 25 N -0.34 -9.50 12.80 -51.34 -0.66 -10.16 16 26 N -0.48 -9.25 7.45 -50.70 -0.38 -9.63 16 27 H 0.45 5.01 8.96 -213.10 -1.91 3.10 16 28 H 0.12 0.34 8.14 -2.39 -0.02 0.33 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.14 2.45 7.85 -2.38 -0.02 2.43 16 32 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.11 1.62 7.48 -2.39 -0.02 1.60 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.38 20.29 5.06 -92.71 -0.47 19.82 16 38 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 40 H 0.06 2.54 6.76 -2.39 -0.02 2.52 16 41 H 0.05 2.10 6.77 -2.38 -0.02 2.08 16 Total: -1.00 -81.72 340.75 0.53 -81.19 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -1.31 Total: 29.30 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.62 Total: 20.21 kcal Atomic # 7 Polarization: -147.53 SS G_CDS: -6.76 Total: -154.28 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -81.72 0.53 -81.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.575 kcal (2) G-P(sol) polarization free energy of solvation -81.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds