Wall clock time and date at job start Tue Mar 31 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30826 * 125.95940 * 2 1 4 4 C 1.33242 * 109.82881 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52446 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47182 * 90.00419 * 5 4 3 7 7 O 1.21280 * 119.99609 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.47427 * 125.64613 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83281 * 204.16163 * 9 8 6 11 11 C 1.55158 * 101.61642 * 322.96922 * 10 9 8 12 12 H 1.09005 * 110.72041 * 277.15972 * 11 10 9 13 13 N 1.46498 * 110.72351 * 153.88368 * 11 10 9 14 14 C 1.36936 * 119.99740 * 86.45403 * 13 11 10 15 15 H 1.07996 * 120.00017 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99761 * 179.97438 * 14 13 11 17 17 N 1.31612 * 119.99966 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99850 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47312 * 89.99793 * 18 16 14 20 20 H 1.48506 * 109.46968 * 209.99719 * 18 16 14 21 21 H 1.48496 * 109.47506 * 329.99353 * 18 16 14 22 22 C 1.47014 * 125.65286 * 180.02562 * 8 6 5 23 23 H 1.09001 * 109.88533 * 59.49138 * 22 8 6 24 24 C 1.53004 * 109.88282 * 298.48304 * 22 8 6 25 25 N 1.30707 * 108.94591 * 0.26511 * 4 3 2 26 26 N 1.34425 * 125.96027 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.82436 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47122 * 89.97933 * 1 2 3 29 29 H 1.08996 * 109.47418 * 209.97672 * 1 2 3 30 30 H 1.08996 * 109.47639 * 329.98140 * 1 2 3 31 31 H 1.09002 * 109.47340 * 329.99833 * 5 4 3 32 32 H 1.09006 * 109.46824 * 210.00389 * 5 4 3 33 33 H 1.09001 * 110.36908 * 85.32181 * 9 8 6 34 34 H 1.09004 * 110.36712 * 322.99618 * 9 8 6 35 35 H 1.09002 * 111.00594 * 81.06240 * 10 9 8 36 36 H 1.09002 * 111.00655 * 204.87504 * 10 9 8 37 37 H 0.97002 * 119.99842 * 266.45425 * 13 11 10 38 38 H 0.97001 * 120.00717 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47092 * 61.44940 * 24 22 8 40 40 H 1.09007 * 109.47223 * 181.45428 * 24 22 8 41 41 H 1.09005 * 109.46875 * 301.44951 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0013 6 6 5.1319 1.9355 1.4193 7 8 4.5140 1.4470 2.3414 8 7 6.1716 2.7572 1.6649 9 6 7.0060 3.4161 0.6436 10 6 8.3529 3.6995 1.3544 11 6 7.8793 4.0707 2.7845 12 1 7.5801 5.1178 2.8321 13 7 8.9267 3.7844 3.7681 14 6 9.8912 4.7196 4.0330 15 1 9.8795 5.6684 3.5173 16 6 10.8833 4.4484 4.9654 17 7 11.8106 5.3470 5.2197 18 14 10.9029 2.8076 5.8578 19 1 11.7109 1.8321 5.0828 20 1 11.5000 2.9845 7.2060 21 1 9.5135 2.3017 5.9945 22 6 6.6621 3.1441 2.9957 23 1 6.9640 2.2566 3.5520 24 6 5.5643 3.8878 3.7590 25 7 3.6194 -0.6167 -0.0066 26 7 2.2964 -1.0881 -0.0005 27 1 2.0093 -2.0146 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 4.4698 2.5471 -0.5152 32 1 5.5740 1.1510 -0.5155 33 1 6.5440 4.3489 0.3203 34 1 7.1585 2.7524 -0.2075 35 1 8.9815 2.8092 1.3698 36 1 8.8736 4.5348 0.8861 37 1 8.9368 2.9323 4.2315 38 1 12.5037 5.1578 5.8714 39 1 4.7056 3.2301 3.8931 40 1 5.9433 4.1940 4.7342 41 1 5.2621 4.7694 3.1936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986253748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:31 Heat of formation + Delta-G solvation = 66.913772 kcal Electronic energy + Delta-G solvation = -23342.882634 eV Core-core repulsion = 19874.069202 eV Total energy + Delta-G solvation = -3468.813433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36205 -39.99522 -37.53719 -34.26131 -33.88559 -32.59774 -31.86650 -31.05082 -30.29258 -29.13007 -27.83331 -25.34728 -23.10952 -22.67135 -21.71626 -20.87360 -20.12822 -18.85974 -18.07286 -17.58204 -17.05191 -16.26073 -15.71780 -15.09421 -14.96132 -14.45887 -14.08894 -13.90056 -13.77429 -13.40254 -13.26015 -13.11070 -12.75929 -12.66191 -12.50709 -12.21518 -12.06667 -11.93350 -11.75004 -11.29447 -11.18885 -10.89562 -10.62974 -10.37487 -10.33472 -10.23228 -10.04784 -9.82187 -9.63844 -9.50055 -8.96447 -8.46825 -7.33636 -5.81555 -3.18604 1.36007 2.36767 2.54622 2.73560 3.18505 3.36803 3.40887 3.45035 3.71715 4.28373 4.48300 4.55982 4.59621 4.89450 4.94907 4.98161 5.12801 5.15277 5.23409 5.36178 5.40749 5.43263 5.53160 5.60048 5.69050 5.83679 5.89350 6.02023 6.02457 6.17751 6.22768 6.37217 6.53630 6.55040 6.63948 6.79964 6.82712 7.67641 7.88156 7.92851 8.27724 8.37025 9.13889 9.86618 10.05035 11.36201 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.003129 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.311522 B = 8945.105252 C = 9140.249854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.530 5.530 4 C 0.254 3.746 5 C -0.045 4.045 6 C 0.536 3.464 7 O -0.534 6.534 8 N -0.609 5.609 9 C 0.095 3.905 10 C -0.154 4.154 11 C 0.182 3.818 12 H 0.074 0.926 13 N -0.740 5.740 14 C -0.246 4.246 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.126 3.874 23 H 0.073 0.927 24 C -0.155 4.155 25 N -0.304 5.304 26 N -0.483 5.483 27 H 0.439 0.561 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.124 -9.962 -14.623 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.259 5.259 4 C -0.029 4.029 5 C -0.088 4.088 6 C 0.323 3.677 7 O -0.411 6.411 8 N -0.344 5.344 9 C -0.028 4.028 10 C -0.195 4.195 11 C 0.070 3.930 12 H 0.092 0.908 13 N -0.382 5.382 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.578 5.578 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.202 1.202 22 C 0.023 3.977 23 H 0.091 0.909 24 C -0.214 4.214 25 N -0.133 5.133 26 N -0.201 5.201 27 H 0.284 0.716 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.774 -10.068 -14.109 27.055 hybrid contribution -0.097 -1.836 0.668 1.956 sum -20.871 -11.904 -13.441 27.531 Atomic orbital electron populations 1.20386 0.83644 1.05114 1.04425 1.24361 0.96598 0.82798 0.95914 1.70294 1.01269 1.29536 1.24834 1.23270 0.92614 0.89697 0.97320 1.19884 0.93555 0.98767 0.96550 1.19713 0.79354 0.78321 0.90345 1.90709 1.52598 1.51669 1.46139 1.48494 1.30735 1.46405 1.08739 1.22468 0.91980 0.97056 0.91290 1.23520 0.94675 1.02730 0.98610 1.21234 0.86541 0.96732 0.88444 0.90812 1.42706 1.30206 1.18098 1.47151 1.19018 1.02235 0.97078 1.19259 0.88962 1.24653 0.97407 0.97474 0.99232 1.69689 1.16550 1.34163 1.37376 0.86596 0.77580 0.84912 0.79742 1.21014 1.21651 1.20222 1.21913 0.94804 0.98190 0.82835 0.90916 1.22055 0.98742 1.00016 1.00537 1.77988 0.96646 1.12260 1.26427 1.47925 1.04276 1.09976 1.57955 0.71564 0.89018 0.89903 0.88280 0.86066 0.86562 0.91171 0.91015 0.90663 0.89986 0.80380 0.92955 0.91944 0.91227 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.82 8.24 -155.70 -1.28 1.54 16 3 N -0.53 -7.16 11.19 -8.16 -0.09 -7.25 16 4 C 0.25 3.56 6.63 -156.85 -1.04 2.52 16 5 C -0.05 -0.54 5.33 -29.03 -0.15 -0.69 16 6 C 0.54 8.35 7.63 -10.99 -0.08 8.27 16 7 O -0.53 -10.44 15.06 5.56 0.08 -10.36 16 8 N -0.61 -9.04 3.07 -162.95 -0.50 -9.54 16 9 C 0.10 1.14 6.69 -2.53 -0.02 1.12 16 10 C -0.15 -2.36 6.76 -24.58 -0.17 -2.53 16 11 C 0.18 3.32 3.12 -66.04 -0.21 3.11 16 12 H 0.07 1.37 7.84 -51.93 -0.41 0.96 16 13 N -0.74 -16.91 5.06 -51.60 -0.26 -17.17 16 14 C -0.25 -6.68 10.46 -15.06 -0.16 -6.84 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 18 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 22 C 0.13 2.16 3.20 -66.90 -0.21 1.95 16 23 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 24 C -0.16 -2.56 9.12 37.16 0.34 -2.22 16 25 N -0.30 -4.22 12.80 32.42 0.41 -3.80 16 26 N -0.48 -4.80 7.45 32.62 0.24 -4.55 16 27 H 0.44 2.57 8.96 -182.33 -1.63 0.93 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.12 1.12 7.85 -51.93 -0.41 0.72 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.67 7.47 -51.93 -0.39 0.29 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.36 8.37 5.37 -40.82 -0.22 8.16 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.06 1.09 6.87 -51.93 -0.36 0.73 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -36.93 341.97 -8.81 -45.74 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.21 Total: 6.03 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.70 Total: 6.39 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: 0.58 Total: -70.21 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.93 -8.81 -45.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.649 kcal (2) G-P(sol) polarization free energy of solvation -36.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds