Wall clock time and date at job start Tue Mar 31 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30826 * 125.95940 * 2 1 4 4 C 1.33242 * 109.82881 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52446 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47182 * 90.00419 * 5 4 3 7 7 O 1.21280 * 119.99609 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.47427 * 125.64613 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83281 * 204.16163 * 9 8 6 11 11 C 1.55158 * 101.61642 * 322.96922 * 10 9 8 12 12 H 1.09005 * 110.72041 * 277.15972 * 11 10 9 13 13 N 1.46498 * 110.72351 * 153.88368 * 11 10 9 14 14 C 1.36936 * 119.99740 * 86.45403 * 13 11 10 15 15 H 1.07996 * 120.00017 * 0.02562 * 14 13 11 16 16 C 1.38814 * 119.99761 * 179.97438 * 14 13 11 17 17 N 1.31612 * 119.99966 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99850 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47312 * 89.99793 * 18 16 14 20 20 H 1.48506 * 109.46968 * 209.99719 * 18 16 14 21 21 H 1.48496 * 109.47506 * 329.99353 * 18 16 14 22 22 C 1.47014 * 125.65286 * 180.02562 * 8 6 5 23 23 H 1.09001 * 109.88533 * 59.49138 * 22 8 6 24 24 C 1.53004 * 109.88282 * 298.48304 * 22 8 6 25 25 N 1.30707 * 108.94591 * 0.26511 * 4 3 2 26 26 N 1.34425 * 125.96027 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.82436 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47122 * 89.97933 * 1 2 3 29 29 H 1.08996 * 109.47418 * 209.97672 * 1 2 3 30 30 H 1.08996 * 109.47639 * 329.98140 * 1 2 3 31 31 H 1.09002 * 109.47340 * 329.99833 * 5 4 3 32 32 H 1.09006 * 109.46824 * 210.00389 * 5 4 3 33 33 H 1.09001 * 110.36908 * 85.32181 * 9 8 6 34 34 H 1.09004 * 110.36712 * 322.99618 * 9 8 6 35 35 H 1.09002 * 111.00594 * 81.06240 * 10 9 8 36 36 H 1.09002 * 111.00655 * 204.87504 * 10 9 8 37 37 H 0.97002 * 119.99842 * 266.45425 * 13 11 10 38 38 H 0.97001 * 120.00717 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47092 * 61.44940 * 24 22 8 40 40 H 1.09007 * 109.47223 * 181.45428 * 24 22 8 41 41 H 1.09005 * 109.46875 * 301.44951 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0013 6 6 5.1319 1.9355 1.4193 7 8 4.5140 1.4470 2.3414 8 7 6.1716 2.7572 1.6649 9 6 7.0060 3.4161 0.6436 10 6 8.3529 3.6995 1.3544 11 6 7.8793 4.0707 2.7845 12 1 7.5801 5.1178 2.8321 13 7 8.9267 3.7844 3.7681 14 6 9.8912 4.7196 4.0330 15 1 9.8795 5.6684 3.5173 16 6 10.8833 4.4484 4.9654 17 7 11.8106 5.3470 5.2197 18 14 10.9029 2.8076 5.8578 19 1 11.7109 1.8321 5.0828 20 1 11.5000 2.9845 7.2060 21 1 9.5135 2.3017 5.9945 22 6 6.6621 3.1441 2.9957 23 1 6.9640 2.2566 3.5520 24 6 5.5643 3.8878 3.7590 25 7 3.6194 -0.6167 -0.0066 26 7 2.2964 -1.0881 -0.0005 27 1 2.0093 -2.0146 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 4.4698 2.5471 -0.5152 32 1 5.5740 1.1510 -0.5155 33 1 6.5440 4.3489 0.3203 34 1 7.1585 2.7524 -0.2075 35 1 8.9815 2.8092 1.3698 36 1 8.8736 4.5348 0.8861 37 1 8.9368 2.9323 4.2315 38 1 12.5037 5.1578 5.8714 39 1 4.7056 3.2301 3.8931 40 1 5.9433 4.1940 4.7342 41 1 5.2621 4.7694 3.1936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986253748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:31 Heat of formation + Delta-G solvation = 39.590994 kcal Electronic energy + Delta-G solvation = -23344.067439 eV Core-core repulsion = 19874.069202 eV Total energy + Delta-G solvation = -3469.998237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.18910 -41.23630 -38.88842 -36.02150 -34.75097 -33.60475 -33.36978 -32.42068 -31.59960 -30.23533 -28.59236 -26.89515 -24.62899 -24.08248 -22.60149 -21.92966 -21.48027 -20.12973 -19.43698 -18.87619 -18.23318 -17.49106 -16.62502 -16.51851 -16.23531 -15.89030 -15.46676 -15.09062 -14.74772 -14.67548 -14.61198 -14.01536 -13.83897 -13.66605 -13.59837 -13.46607 -13.39568 -13.10721 -12.97522 -12.74720 -12.66205 -12.52704 -12.22786 -11.99850 -11.80763 -11.53564 -11.27754 -11.12176 -10.98028 -10.86985 -10.47071 -9.68830 -9.31720 -8.01941 -5.35469 0.54467 1.38398 1.38818 1.45629 1.55612 1.57853 1.72902 2.12176 2.47449 2.98981 3.27991 3.46171 3.54376 3.55045 3.76311 3.88440 4.00135 4.13520 4.32806 4.35844 4.39071 4.43591 4.49056 4.66400 4.70427 4.74110 4.78377 4.93247 5.02270 5.04669 5.21709 5.22108 5.25807 5.30939 5.36394 5.45863 5.78399 6.19665 6.21961 6.52504 7.05083 7.05670 7.10316 7.81533 7.99036 9.18982 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.003129 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.311522 B = 8945.105252 C = 9140.249854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.567 5.567 4 C 0.237 3.763 5 C -0.038 4.038 6 C 0.534 3.466 7 O -0.581 6.581 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.148 4.148 11 C 0.173 3.827 12 H 0.072 0.928 13 N -0.746 5.746 14 C -0.221 4.221 15 H 0.069 0.931 16 C -0.058 4.058 17 N -0.979 5.979 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.261 1.261 22 C 0.132 3.868 23 H 0.050 0.950 24 C -0.147 4.147 25 N -0.340 5.340 26 N -0.476 5.476 27 H 0.455 0.545 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.362 0.638 38 H 0.257 0.743 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 -11.171 -16.673 30.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.297 5.297 4 C -0.047 4.047 5 C -0.080 4.080 6 C 0.323 3.677 7 O -0.461 6.461 8 N -0.341 5.341 9 C -0.020 4.020 10 C -0.189 4.189 11 C 0.064 3.936 12 H 0.090 0.910 13 N -0.388 5.388 14 C -0.352 4.352 15 H 0.087 0.913 16 C -0.250 4.250 17 N -0.630 5.630 18 Si 0.773 3.227 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.186 1.186 22 C 0.027 3.973 23 H 0.068 0.932 24 C -0.205 4.205 25 N -0.169 5.169 26 N -0.196 5.196 27 H 0.303 0.697 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.195 0.805 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.883 -11.310 -16.223 30.245 hybrid contribution 0.413 -1.442 1.241 1.946 sum -22.471 -12.752 -14.982 29.867 Atomic orbital electron populations 1.20645 0.80025 1.06316 1.06278 1.25263 0.98334 0.82001 0.93633 1.70292 1.01564 1.31285 1.26588 1.23635 0.93436 0.90039 0.97553 1.19974 0.93985 1.00013 0.93994 1.20365 0.78601 0.77300 0.91477 1.90687 1.54176 1.53353 1.47908 1.48517 1.30901 1.46384 1.08276 1.22657 0.89339 0.99056 0.90972 1.23364 0.96584 1.02416 0.96532 1.21431 0.86017 0.96958 0.89173 0.90971 1.42722 1.30498 1.17224 1.48380 1.18990 1.02236 0.96591 1.17410 0.91337 1.25350 0.97712 1.00924 1.00971 1.69843 1.17850 1.36438 1.38867 0.85572 0.78193 0.80957 0.78018 1.20563 1.22383 1.18589 1.21635 0.94447 0.96936 0.84271 0.93214 1.21959 0.97994 1.00193 1.00333 1.77866 0.98904 1.12605 1.27572 1.47866 1.03244 1.11016 1.57454 0.69682 0.86655 0.87201 0.88504 0.83341 0.84082 0.88423 0.87291 0.91774 0.89371 0.80471 0.93380 0.93138 0.92099 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 71.24 0.75 0.26 16 2 C 0.29 5.18 8.24 138.23 1.14 6.32 16 3 N -0.57 -14.50 11.19 -179.73 -2.01 -16.51 16 4 C 0.24 6.27 6.63 138.63 0.92 7.19 16 5 C -0.04 -0.81 5.33 29.10 0.16 -0.65 16 6 C 0.53 15.72 7.63 87.66 0.67 16.39 16 7 O -0.58 -22.55 15.06 -3.03 -0.05 -22.59 16 8 N -0.61 -16.67 3.07 -787.86 -2.42 -19.09 16 9 C 0.10 2.04 6.69 86.85 0.58 2.62 16 10 C -0.15 -4.21 6.76 31.99 0.22 -3.99 16 11 C 0.17 6.15 3.12 46.22 0.14 6.30 16 12 H 0.07 2.60 7.84 -2.38 -0.02 2.58 16 13 N -0.75 -33.82 5.06 -317.15 -1.60 -35.42 16 14 C -0.22 -12.12 10.46 84.03 0.88 -11.24 16 15 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 16 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 17 N -0.98 -61.78 13.97 21.65 0.30 -61.48 16 18 Si 0.94 45.90 27.74 68.60 1.90 47.80 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 21 H -0.26 -11.83 6.52 99.48 0.65 -11.19 16 22 C 0.13 4.40 3.20 45.38 0.15 4.54 16 23 H 0.05 1.90 7.69 -2.39 -0.02 1.88 16 24 C -0.15 -4.76 9.12 71.98 0.66 -4.10 16 25 N -0.34 -9.02 12.80 -51.33 -0.66 -9.68 16 26 N -0.48 -8.70 7.45 -50.71 -0.38 -9.08 16 27 H 0.45 4.52 8.96 -213.09 -1.91 2.61 16 28 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.14 2.23 7.85 -2.38 -0.02 2.21 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 1.49 7.47 -2.38 -0.02 1.47 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.36 16.48 5.37 -92.71 -0.50 15.99 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.05 1.76 6.87 -2.39 -0.02 1.74 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -82.92 341.97 0.41 -82.51 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.40 Total: 22.79 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.72 Total: 20.76 kcal Atomic # 7 Polarization: -144.50 SS G_CDS: -6.76 Total: -151.26 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -82.92 0.41 -82.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.100 kcal (2) G-P(sol) polarization free energy of solvation -82.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds