Wall clock time and date at job start Tue Mar 31 2020 03:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30826 * 125.96200 * 2 1 4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46984 * 90.00242 * 5 4 3 7 7 O 1.21274 * 119.99738 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99628 * 180.02562 * 6 5 4 9 9 C 1.47420 * 125.65092 * 0.02562 * 8 6 5 10 10 C 1.54916 * 104.83004 * 155.83664 * 9 8 6 11 11 C 1.55161 * 101.57826 * 37.01381 * 10 9 8 12 12 H 1.08998 * 110.71922 * 83.03738 * 11 10 9 13 13 N 1.46500 * 110.71624 * 206.13192 * 11 10 9 14 14 C 1.36938 * 119.99836 * 273.54451 * 13 11 10 15 15 H 1.08001 * 120.00038 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99593 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99631 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47414 * 90.00208 * 18 16 14 20 20 H 1.48500 * 109.47078 * 210.00143 * 18 16 14 21 21 H 1.48501 * 109.47590 * 330.00073 * 18 16 14 22 22 C 1.47018 * 125.64384 * 179.71901 * 8 6 5 23 23 H 1.09001 * 109.88288 * 300.50938 * 22 8 6 24 24 C 1.53001 * 109.88870 * 61.67583 * 22 8 6 25 25 N 1.30712 * 108.94325 * 359.75797 * 4 3 2 26 26 N 1.34430 * 125.95959 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.82220 * 359.92287 * 26 2 1 28 28 H 1.08996 * 109.47096 * 269.95921 * 1 2 3 29 29 H 1.08994 * 109.47164 * 29.96092 * 1 2 3 30 30 H 1.09005 * 109.46768 * 149.95951 * 1 2 3 31 31 H 1.08994 * 109.47091 * 210.00258 * 5 4 3 32 32 H 1.08999 * 109.47214 * 330.00395 * 5 4 3 33 33 H 1.08995 * 110.37219 * 274.67830 * 9 8 6 34 34 H 1.09004 * 110.36750 * 36.89670 * 9 8 6 35 35 H 1.09007 * 111.00023 * 155.08781 * 10 9 8 36 36 H 1.09001 * 111.00435 * 278.93722 * 10 9 8 37 37 H 0.97000 * 119.99805 * 93.55179 * 13 11 10 38 38 H 0.96995 * 119.99967 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46769 * 58.54282 * 24 22 8 40 40 H 1.08991 * 109.47786 * 178.54780 * 24 22 8 41 41 H 1.09001 * 109.46912 * 298.55155 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1320 1.9354 1.4193 7 8 4.5140 1.4470 2.3414 8 7 6.1711 2.7579 1.6649 9 6 7.0040 3.4184 0.6436 10 6 7.5902 4.6637 1.3547 11 6 7.8420 4.1161 2.7845 12 1 8.7934 3.5864 2.8325 13 7 7.8042 5.2004 3.7689 14 6 8.9363 5.9234 4.0348 15 1 9.8570 5.6946 3.5186 16 6 8.9006 6.9506 4.9679 17 7 7.7788 7.2291 5.5974 18 14 10.4448 7.9373 5.3302 19 1 10.5119 9.1052 4.4155 20 1 10.4104 8.4117 6.7370 21 1 11.6397 7.0795 5.1262 22 6 6.6575 3.1498 2.9957 23 1 5.8625 3.6503 3.5485 24 6 7.1293 1.9128 3.7626 25 7 3.6194 -0.6168 0.0043 26 7 2.2964 -1.0881 -0.0005 27 1 2.0093 -2.0147 0.0001 28 1 -0.3633 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 5.5740 1.1509 -0.5155 32 1 4.4699 2.5470 -0.5151 33 1 7.8053 2.7543 0.3198 34 1 6.3934 3.7184 -0.2081 35 1 8.5232 4.9778 0.8867 36 1 6.8685 5.4804 1.3706 37 1 6.9773 5.4061 4.2323 38 1 7.7540 7.9466 6.2497 39 1 7.9193 1.4158 3.1996 40 1 7.5122 2.2138 4.7376 41 1 6.2924 1.2274 3.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986253750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:36 Heat of formation + Delta-G solvation = 62.964402 kcal Electronic energy + Delta-G solvation = -23270.162222 eV Core-core repulsion = 19801.177532 eV Total energy + Delta-G solvation = -3468.984690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30850 -39.88813 -37.41332 -34.11024 -33.82273 -32.54538 -31.78781 -30.90424 -30.05720 -28.81470 -27.74427 -25.17747 -23.19063 -22.79197 -21.66383 -20.84521 -19.96555 -18.75532 -18.02155 -17.24255 -16.92090 -16.02495 -15.65217 -15.23732 -14.77492 -14.40165 -13.99742 -13.79903 -13.57229 -13.33987 -13.21835 -13.07928 -12.91320 -12.59454 -12.34409 -12.06470 -12.00332 -11.74375 -11.56513 -11.12717 -11.00853 -10.83832 -10.55250 -10.30600 -10.23877 -10.17487 -9.99744 -9.78286 -9.70958 -9.41974 -8.92841 -8.36199 -7.01436 -5.79965 -3.10370 1.40990 2.41823 2.61108 2.82555 3.27520 3.42141 3.47530 3.49258 3.77932 4.33248 4.53876 4.56268 4.68382 4.94867 5.05077 5.07021 5.22248 5.30191 5.35144 5.42833 5.48210 5.52227 5.62790 5.69120 5.82499 5.96655 6.07330 6.12616 6.15945 6.23320 6.33775 6.49550 6.61657 6.65286 6.77201 6.84859 6.96009 7.67044 7.78405 7.93835 8.36138 8.38441 9.48815 10.03707 10.38400 11.42262 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.002896 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.738729 B = 9665.870519 C = 9808.218402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.529 5.529 4 C 0.255 3.745 5 C -0.046 4.046 6 C 0.536 3.464 7 O -0.534 6.534 8 N -0.609 5.609 9 C 0.096 3.904 10 C -0.156 4.156 11 C 0.176 3.824 12 H 0.065 0.935 13 N -0.715 5.715 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.129 3.871 23 H 0.077 0.923 24 C -0.154 4.154 25 N -0.305 5.305 26 N -0.484 5.484 27 H 0.439 0.561 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 -15.335 -15.230 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.259 5.259 4 C -0.028 4.028 5 C -0.088 4.088 6 C 0.322 3.678 7 O -0.411 6.411 8 N -0.343 5.343 9 C -0.028 4.028 10 C -0.197 4.197 11 C 0.065 3.935 12 H 0.083 0.917 13 N -0.356 5.356 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.026 3.974 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.134 5.134 26 N -0.202 5.202 27 H 0.284 0.716 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.503 -15.578 -14.690 23.849 hybrid contribution 0.227 0.068 0.335 0.410 sum -10.276 -15.510 -14.355 23.500 Atomic orbital electron populations 1.20389 0.83652 1.04852 1.04690 1.24367 0.96606 0.82783 0.95897 1.70302 1.01307 1.29529 1.24731 1.23280 0.92625 0.89676 0.97228 1.19890 0.93524 0.98696 0.96685 1.19692 0.79262 0.78574 0.90273 1.90707 1.52600 1.51688 1.46121 1.48503 1.30645 1.46281 1.08868 1.22441 0.93993 0.94992 0.91331 1.23572 1.01164 0.95980 0.98984 1.21251 0.94601 0.88822 0.88851 0.91700 1.42361 1.11645 1.35793 1.45788 1.19198 0.89584 1.10274 1.18308 0.90992 1.24768 0.97127 0.99520 0.99295 1.69664 1.25146 1.33096 1.29838 0.86181 0.82446 0.80169 0.77304 1.21675 1.21781 1.20712 1.21886 0.97294 0.95691 0.82576 0.90451 1.22041 1.01018 0.97599 1.00559 1.77965 0.96651 1.12260 1.26547 1.47920 1.04288 1.09939 1.58053 0.71609 0.88916 0.88302 0.89962 0.86645 0.86114 0.91521 0.91134 0.90530 0.90535 0.77970 0.93379 0.93076 0.91187 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.28 2.98 8.24 -155.70 -1.28 1.70 16 3 N -0.53 -7.57 11.19 -8.16 -0.09 -7.66 16 4 C 0.26 3.71 6.63 -156.86 -1.04 2.67 16 5 C -0.05 -0.57 5.33 -29.03 -0.15 -0.73 16 6 C 0.54 8.77 7.64 -10.98 -0.08 8.69 16 7 O -0.53 -10.89 15.07 5.56 0.08 -10.81 16 8 N -0.61 -9.56 3.07 -163.03 -0.50 -10.06 16 9 C 0.10 1.22 6.69 -2.53 -0.02 1.20 16 10 C -0.16 -2.51 6.76 -24.58 -0.17 -2.67 16 11 C 0.18 3.38 3.11 -66.10 -0.21 3.18 16 12 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 13 N -0.72 -17.43 5.25 -51.65 -0.27 -17.71 16 14 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 18 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.13 2.35 3.20 -66.96 -0.21 2.13 16 23 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 24 C -0.15 -2.69 9.11 37.16 0.34 -2.35 16 25 N -0.31 -4.31 12.80 32.42 0.41 -3.89 16 26 N -0.48 -4.96 7.45 32.62 0.24 -4.71 16 27 H 0.44 2.66 8.96 -182.34 -1.63 1.03 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.12 1.27 7.84 -51.93 -0.41 0.86 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.39 10.20 7.50 -40.82 -0.31 9.90 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.12 6.88 -51.93 -0.36 0.76 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -36.15 345.05 -9.16 -45.31 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.25 Total: 7.67 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.69 Total: 6.74 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: 0.52 Total: -71.08 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.15 -9.16 -45.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.277 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds