Wall clock time and date at job start Tue Mar 31 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30826 * 125.96200 * 2 1 4 4 C 1.33238 * 109.83173 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52818 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46984 * 90.00242 * 5 4 3 7 7 O 1.21274 * 119.99738 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99628 * 180.02562 * 6 5 4 9 9 C 1.47420 * 125.65092 * 0.02562 * 8 6 5 10 10 C 1.54916 * 104.83004 * 155.83664 * 9 8 6 11 11 C 1.55161 * 101.57826 * 37.01381 * 10 9 8 12 12 H 1.08998 * 110.71922 * 83.03738 * 11 10 9 13 13 N 1.46500 * 110.71624 * 206.13192 * 11 10 9 14 14 C 1.36938 * 119.99836 * 273.54451 * 13 11 10 15 15 H 1.08001 * 120.00038 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99593 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99631 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47414 * 90.00208 * 18 16 14 20 20 H 1.48500 * 109.47078 * 210.00143 * 18 16 14 21 21 H 1.48501 * 109.47590 * 330.00073 * 18 16 14 22 22 C 1.47018 * 125.64384 * 179.71901 * 8 6 5 23 23 H 1.09001 * 109.88288 * 300.50938 * 22 8 6 24 24 C 1.53001 * 109.88870 * 61.67583 * 22 8 6 25 25 N 1.30712 * 108.94325 * 359.75797 * 4 3 2 26 26 N 1.34430 * 125.95959 * 180.02562 * 2 1 3 27 27 H 0.97001 * 126.82220 * 359.92287 * 26 2 1 28 28 H 1.08996 * 109.47096 * 269.95921 * 1 2 3 29 29 H 1.08994 * 109.47164 * 29.96092 * 1 2 3 30 30 H 1.09005 * 109.46768 * 149.95951 * 1 2 3 31 31 H 1.08994 * 109.47091 * 210.00258 * 5 4 3 32 32 H 1.08999 * 109.47214 * 330.00395 * 5 4 3 33 33 H 1.08995 * 110.37219 * 274.67830 * 9 8 6 34 34 H 1.09004 * 110.36750 * 36.89670 * 9 8 6 35 35 H 1.09007 * 111.00023 * 155.08781 * 10 9 8 36 36 H 1.09001 * 111.00435 * 278.93722 * 10 9 8 37 37 H 0.97000 * 119.99805 * 93.55179 * 13 11 10 38 38 H 0.96995 * 119.99967 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46769 * 58.54282 * 24 22 8 40 40 H 1.08991 * 109.47786 * 178.54780 * 24 22 8 41 41 H 1.09001 * 109.46912 * 298.55155 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0013 6 6 5.1320 1.9354 1.4193 7 8 4.5140 1.4470 2.3414 8 7 6.1711 2.7579 1.6649 9 6 7.0040 3.4184 0.6436 10 6 7.5902 4.6637 1.3547 11 6 7.8420 4.1161 2.7845 12 1 8.7934 3.5864 2.8325 13 7 7.8042 5.2004 3.7689 14 6 8.9363 5.9234 4.0348 15 1 9.8570 5.6946 3.5186 16 6 8.9006 6.9506 4.9679 17 7 7.7788 7.2291 5.5974 18 14 10.4448 7.9373 5.3302 19 1 10.5119 9.1052 4.4155 20 1 10.4104 8.4117 6.7370 21 1 11.6397 7.0795 5.1262 22 6 6.6575 3.1498 2.9957 23 1 5.8625 3.6503 3.5485 24 6 7.1293 1.9128 3.7626 25 7 3.6194 -0.6168 0.0043 26 7 2.2964 -1.0881 -0.0005 27 1 2.0093 -2.0147 0.0001 28 1 -0.3633 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 5.5740 1.1509 -0.5155 32 1 4.4699 2.5470 -0.5151 33 1 7.8053 2.7543 0.3198 34 1 6.3934 3.7184 -0.2081 35 1 8.5232 4.9778 0.8867 36 1 6.8685 5.4804 1.3706 37 1 6.9773 5.4061 4.2323 38 1 7.7540 7.9466 6.2497 39 1 7.9193 1.4158 3.1996 40 1 7.5122 2.2138 4.7376 41 1 6.2924 1.2274 3.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986253750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:35 Heat of formation + Delta-G solvation = 36.503000 kcal Electronic energy + Delta-G solvation = -23271.309674 eV Core-core repulsion = 19801.177532 eV Total energy + Delta-G solvation = -3470.132143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.18785 -41.20316 -38.82841 -35.90047 -34.74638 -33.42755 -33.36685 -32.32997 -31.33834 -30.08434 -28.57550 -26.83444 -24.89409 -24.08484 -22.60815 -21.90701 -21.34661 -20.02876 -19.10412 -18.88405 -18.18211 -17.35636 -16.64793 -16.56832 -16.30022 -15.54556 -15.37064 -15.27684 -14.73787 -14.65806 -14.55345 -13.96749 -13.74900 -13.61928 -13.55198 -13.39821 -13.13347 -13.02144 -12.88017 -12.74861 -12.64641 -12.50523 -12.13248 -12.07524 -11.69474 -11.52567 -11.27063 -11.11683 -10.93426 -10.84551 -10.46216 -9.66342 -9.00738 -7.92142 -5.22149 0.54183 1.50275 1.52040 1.56436 1.59363 1.60494 1.73195 2.13980 2.59226 2.99790 3.38715 3.50064 3.55414 3.79246 3.83918 3.89020 4.07455 4.20179 4.35804 4.36766 4.41333 4.46747 4.54746 4.67153 4.68877 4.73472 4.79841 4.96447 5.04196 5.05795 5.21547 5.22895 5.27648 5.31107 5.38231 5.49945 5.57617 6.20371 6.28111 6.55500 7.05729 7.11746 7.34339 8.06757 8.30495 9.31601 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.002896 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.738729 B = 9665.870519 C = 9808.218402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.236 3.764 5 C -0.037 4.037 6 C 0.532 3.468 7 O -0.583 6.583 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.148 4.148 11 C 0.171 3.829 12 H 0.072 0.928 13 N -0.731 5.731 14 C -0.234 4.234 15 H 0.085 0.915 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.301 1.301 21 H -0.266 1.266 22 C 0.134 3.866 23 H 0.041 0.959 24 C -0.143 4.143 25 N -0.335 5.335 26 N -0.474 5.474 27 H 0.455 0.545 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.370 0.630 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -16.515 -17.918 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.047 4.047 5 C -0.079 4.079 6 C 0.321 3.679 7 O -0.463 6.463 8 N -0.341 5.341 9 C -0.020 4.020 10 C -0.189 4.189 11 C 0.061 3.939 12 H 0.090 0.910 13 N -0.370 5.370 14 C -0.366 4.366 15 H 0.103 0.897 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.228 1.228 21 H -0.191 1.191 22 C 0.030 3.970 23 H 0.060 0.940 24 C -0.201 4.201 25 N -0.165 5.165 26 N -0.195 5.195 27 H 0.304 0.696 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.202 0.798 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.979 -16.817 -17.458 26.214 hybrid contribution -0.020 0.322 1.138 1.183 sum -9.999 -16.495 -16.319 25.266 Atomic orbital electron populations 1.20646 0.80075 1.06836 1.05732 1.25243 0.98324 0.82009 0.93696 1.70295 1.01780 1.31477 1.26588 1.23626 0.93345 0.90105 0.97634 1.19969 0.94193 0.99828 0.93900 1.20408 0.78385 0.77628 0.91517 1.90683 1.54093 1.53568 1.47991 1.48538 1.30924 1.46234 1.08356 1.22657 0.94944 0.93542 0.90898 1.23390 1.01666 0.96912 0.96911 1.21450 0.95102 0.87841 0.89491 0.91046 1.42551 1.10408 1.37024 1.47033 1.19625 0.90459 1.09453 1.17022 0.89748 1.25592 0.99948 1.01371 1.00082 1.69838 1.27384 1.34026 1.31095 0.85129 0.79492 0.78775 0.76286 1.21373 1.22845 1.19076 1.21584 0.95905 0.95485 0.84052 0.94046 1.21922 1.00940 0.97067 1.00206 1.77839 0.98828 1.12395 1.27425 1.47856 1.03240 1.10972 1.57393 0.69601 0.88112 0.87907 0.86391 0.83554 0.83856 0.88255 0.87521 0.88982 0.92610 0.79822 0.94165 0.91039 0.92437 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.29 5.62 8.24 138.23 1.14 6.75 16 3 N -0.57 -15.82 11.19 -179.72 -2.01 -17.83 16 4 C 0.24 6.61 6.63 138.63 0.92 7.53 16 5 C -0.04 -0.85 5.33 29.10 0.16 -0.70 16 6 C 0.53 16.90 7.64 87.66 0.67 17.57 16 7 O -0.58 -24.17 15.07 -3.01 -0.05 -24.22 16 8 N -0.61 -18.17 3.07 -788.09 -2.42 -20.59 16 9 C 0.10 2.21 6.69 86.86 0.58 2.79 16 10 C -0.15 -4.45 6.76 31.99 0.22 -4.24 16 11 C 0.17 6.43 3.11 46.18 0.14 6.57 16 12 H 0.07 2.62 7.84 -2.39 -0.02 2.60 16 13 N -0.73 -36.22 5.25 -317.34 -1.67 -37.88 16 14 C -0.23 -12.53 9.98 84.03 0.84 -11.69 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 18 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C 0.13 4.93 3.20 45.34 0.15 5.07 16 23 H 0.04 1.81 7.68 -2.39 -0.02 1.80 16 24 C -0.14 -5.04 9.11 71.98 0.66 -4.38 16 25 N -0.34 -9.10 12.80 -51.33 -0.66 -9.76 16 26 N -0.47 -9.06 7.45 -50.70 -0.38 -9.43 16 27 H 0.46 4.74 8.96 -213.10 -1.91 2.83 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.14 2.57 7.84 -2.39 -0.02 2.55 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 1.65 7.47 -2.39 -0.02 1.64 16 35 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.37 20.44 7.50 -92.71 -0.70 19.75 16 38 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.77 6.88 -2.39 -0.02 1.76 16 Total: -1.00 -82.10 345.05 0.27 -81.82 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -1.54 Total: 28.50 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.68 Total: 21.47 kcal Atomic # 7 Polarization: -148.26 SS G_CDS: -6.84 Total: -155.10 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.10 0.27 -81.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.324 kcal (2) G-P(sol) polarization free energy of solvation -82.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds