Wall clock time and date at job start Tue Mar 31 2020 03:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30831 * 125.96618 * 2 1 4 4 C 1.33241 * 109.83316 * 180.12262 * 3 2 1 5 5 C 1.50698 * 125.52645 * 179.85165 * 4 3 2 6 6 C 1.50698 * 109.47230 * 269.71444 * 5 4 3 7 7 O 1.21280 * 119.99745 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99753 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.65138 * 0.02907 * 8 6 5 10 10 C 1.54908 * 104.92961 * 204.15299 * 9 8 6 11 11 C 1.55154 * 101.58289 * 322.93718 * 10 9 8 12 12 H 1.08997 * 110.72022 * 277.13434 * 11 10 9 13 13 N 1.46497 * 110.72021 * 153.86481 * 11 10 9 14 14 C 1.36935 * 120.00023 * 86.45627 * 13 11 10 15 15 H 1.07998 * 120.00224 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99817 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00358 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99999 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47397 * 119.99554 * 18 16 14 21 21 H 1.48496 * 109.47304 * 240.00076 * 18 16 14 22 22 C 1.47290 * 125.79121 * 180.02562 * 8 6 5 23 23 H 1.08995 * 110.00297 * 298.43119 * 22 8 6 24 24 C 1.53002 * 109.85675 * 59.50355 * 22 8 6 25 25 N 1.30711 * 108.94140 * 359.58810 * 4 3 2 26 26 N 1.34433 * 125.96052 * 179.66866 * 2 1 3 27 27 H 0.96999 * 126.81783 * 0.02562 * 26 2 1 28 28 H 1.08993 * 109.46995 * 270.33541 * 1 2 3 29 29 H 1.08998 * 109.46829 * 30.33009 * 1 2 3 30 30 H 1.08996 * 109.47404 * 150.32663 * 1 2 3 31 31 H 1.09001 * 109.46865 * 149.71435 * 5 4 3 32 32 H 1.09000 * 109.47039 * 29.71975 * 5 4 3 33 33 H 1.09002 * 110.36696 * 85.25946 * 9 8 6 34 34 H 1.08995 * 110.36608 * 323.04783 * 9 8 6 35 35 H 1.09008 * 111.00494 * 81.01141 * 10 9 8 36 36 H 1.09000 * 111.00857 * 204.82205 * 10 9 8 37 37 H 0.97001 * 120.00178 * 266.45146 * 13 11 10 38 38 H 0.97000 * 120.00067 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47227 * 177.83370 * 24 22 8 40 40 H 1.09002 * 109.47214 * 297.83398 * 24 22 8 41 41 H 1.09004 * 109.46879 * 57.83661 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6235 -0.0067 6 6 5.1322 1.9278 -1.4288 7 8 4.5144 1.4345 -2.3485 8 7 6.1713 2.7489 -1.6786 9 6 7.0049 3.4140 -0.6606 10 6 7.5925 4.6564 -1.3755 11 6 7.8459 4.1037 -2.8029 12 1 8.7958 3.5709 -2.8471 13 7 7.8098 5.1845 -3.7912 14 6 8.9424 5.9061 -4.0583 15 1 9.8623 5.6788 -3.5401 16 6 8.9080 6.9306 -4.9944 17 7 7.7869 7.2080 -5.6255 18 14 10.4530 7.9155 -5.3583 19 1 11.5709 7.4100 -4.5215 20 1 10.8047 7.7723 -6.7939 21 1 10.2116 9.3476 -5.0482 22 6 6.6649 3.1326 -3.0123 23 1 7.0031 2.2487 -3.5531 24 6 5.5518 3.8288 -3.7979 25 7 3.6194 -0.6169 0.0045 26 7 2.2964 -1.0881 0.0063 27 1 2.0093 -2.0146 0.0113 28 1 -0.3633 0.0060 1.0276 29 1 -0.3633 0.8870 -0.5190 30 1 -0.3634 -0.8928 -0.5087 31 1 5.5740 1.1534 0.5101 32 1 4.4699 2.5495 0.5023 33 1 7.8056 2.7506 -0.3334 34 1 6.3946 3.7187 0.1894 35 1 6.8711 5.4734 -1.3952 36 1 8.5246 4.9723 -0.9070 37 1 6.9835 5.3889 -4.2564 38 1 7.7629 7.9236 -6.2799 39 1 5.9346 4.1441 -4.7686 40 1 4.7215 3.1374 -3.9419 41 1 5.2063 4.7010 -3.2429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986253751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:38 Heat of formation + Delta-G solvation = 44.055007 kcal Electronic energy + Delta-G solvation = -23377.787931 eV Core-core repulsion = 19907.983268 eV Total energy + Delta-G solvation = -3469.804663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.18291 -41.22868 -38.90206 -35.91220 -34.73528 -33.48245 -33.36422 -32.11627 -31.36217 -29.97591 -28.57001 -26.76944 -25.42481 -24.04845 -22.68040 -21.87463 -20.78616 -19.89308 -19.41748 -18.88337 -18.24248 -17.05521 -16.82811 -16.50023 -16.39120 -15.70079 -15.57855 -15.30387 -14.75261 -14.63869 -14.33282 -13.90391 -13.67236 -13.65952 -13.54378 -13.32810 -13.10090 -12.95101 -12.89733 -12.85655 -12.74225 -12.52509 -12.03342 -11.98822 -11.58578 -11.50022 -11.25754 -11.11260 -10.91006 -10.86031 -10.45435 -9.66180 -8.98953 -7.91686 -5.20677 0.54665 1.50572 1.51277 1.56466 1.60462 1.61410 1.73444 2.14475 2.59602 3.00218 3.38831 3.50585 3.56399 3.80526 3.85369 3.92880 4.00222 4.21899 4.35980 4.37260 4.42197 4.45818 4.59266 4.67084 4.70487 4.73559 4.84291 4.89670 5.04669 5.07700 5.21587 5.23087 5.29393 5.31364 5.37324 5.53397 5.58596 6.20679 6.30083 6.56252 7.06126 7.12495 7.37159 8.11172 8.34449 9.32362 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.040471 B = 0.002930 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.686557 B = 9553.911119 C = 9876.061474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.570 5.570 4 C 0.237 3.763 5 C -0.037 4.037 6 C 0.533 3.467 7 O -0.582 6.582 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.145 4.145 11 C 0.165 3.835 12 H 0.068 0.932 13 N -0.734 5.734 14 C -0.234 4.234 15 H 0.083 0.917 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.299 1.299 21 H -0.296 1.296 22 C 0.136 3.864 23 H 0.062 0.938 24 C -0.143 4.143 25 N -0.336 5.336 26 N -0.474 5.474 27 H 0.455 0.545 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.380 0.620 38 H 0.249 0.751 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -15.783 17.958 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.047 4.047 5 C -0.079 4.079 6 C 0.321 3.679 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.021 4.021 10 C -0.185 4.185 11 C 0.056 3.944 12 H 0.086 0.914 13 N -0.377 5.377 14 C -0.366 4.366 15 H 0.101 0.899 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.226 1.226 21 H -0.224 1.224 22 C 0.031 3.969 23 H 0.080 0.920 24 C -0.201 4.201 25 N -0.166 5.166 26 N -0.195 5.195 27 H 0.304 0.696 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.216 0.784 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.797 -16.083 17.513 26.114 hybrid contribution 0.096 0.274 -1.124 1.161 sum -10.701 -15.808 16.388 25.159 Atomic orbital electron populations 1.20642 0.80077 1.06281 1.06279 1.25247 0.98323 0.82013 0.93681 1.70300 1.01743 1.31450 1.26590 1.23622 0.93360 0.90093 0.97599 1.19967 0.94168 0.99852 0.93917 1.20386 0.78457 0.77517 0.91491 1.90683 1.53946 1.53446 1.48157 1.48612 1.31003 1.46174 1.08273 1.22644 0.94941 0.93578 0.90962 1.23358 1.01594 0.96917 0.96655 1.21391 0.94959 0.88320 0.89758 0.91375 1.42888 1.10923 1.37137 1.46731 1.19697 0.90629 1.09566 1.16727 0.89909 1.25566 0.99905 1.01392 1.00149 1.69836 1.27266 1.34230 1.30984 0.85073 0.79540 0.78022 0.77108 1.18589 1.22625 1.22352 1.21599 0.94402 0.96920 0.83938 0.91996 1.21801 0.98398 0.99747 1.00144 1.77840 0.98834 1.12410 1.27503 1.47854 1.03234 1.10974 1.57416 0.69614 0.86617 0.88711 0.87080 0.83611 0.83854 0.88296 0.87551 0.92540 0.89068 0.78413 0.94170 0.92537 0.93061 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.29 5.58 8.24 138.23 1.14 6.72 16 3 N -0.57 -15.69 11.19 -179.73 -2.01 -17.70 16 4 C 0.24 6.59 6.63 138.63 0.92 7.51 16 5 C -0.04 -0.85 5.33 29.10 0.16 -0.70 16 6 C 0.53 16.78 7.63 87.66 0.67 17.45 16 7 O -0.58 -23.88 14.96 -3.03 -0.05 -23.93 16 8 N -0.61 -18.01 3.09 -787.43 -2.43 -20.45 16 9 C 0.10 2.18 6.68 86.85 0.58 2.76 16 10 C -0.14 -4.32 6.77 31.98 0.22 -4.11 16 11 C 0.17 6.24 3.46 46.18 0.16 6.40 16 12 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 13 N -0.73 -36.04 5.02 -317.34 -1.59 -37.63 16 14 C -0.23 -12.55 9.98 84.03 0.84 -11.71 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 18 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 22 C 0.14 4.95 3.49 45.29 0.16 5.10 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 C -0.14 -5.81 7.95 71.98 0.57 -5.24 16 25 N -0.34 -9.12 12.80 -51.34 -0.66 -9.77 16 26 N -0.47 -9.03 7.45 -50.70 -0.38 -9.41 16 27 H 0.46 4.73 8.96 -213.10 -1.91 2.82 16 28 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.14 2.55 7.85 -2.39 -0.02 2.53 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.64 7.47 -2.39 -0.02 1.62 16 35 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.38 20.28 4.92 -92.71 -0.46 19.83 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.06 2.53 6.67 -2.38 -0.02 2.51 16 40 H 0.05 2.14 6.78 -2.39 -0.02 2.12 16 41 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 Total: -1.00 -81.59 340.75 0.52 -81.07 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.30 Total: 29.06 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.62 Total: 20.38 kcal Atomic # 7 Polarization: -147.38 SS G_CDS: -6.79 Total: -154.16 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -81.59 0.52 -81.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986253751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.127 kcal (2) G-P(sol) polarization free energy of solvation -81.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds