Wall clock time and date at job start Tue Mar 31 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36597 * 126.58147 * 2 1 4 4 C 1.47517 * 125.76970 * 0.03702 * 3 2 1 5 5 O 1.21594 * 120.00253 * 359.71352 * 4 3 2 6 6 N 1.34782 * 119.99870 * 179.71579 * 4 3 2 7 7 C 1.47422 * 125.64734 * 0.05300 * 6 4 3 8 8 C 1.54906 * 104.83284 * 204.08173 * 7 6 4 9 9 H 1.09000 * 111.03945 * 204.89940 * 8 7 6 10 10 N 1.46504 * 111.00538 * 81.06220 * 8 7 6 11 11 C 1.36943 * 119.99781 * 92.80655 * 10 8 7 12 12 H 1.08002 * 119.99788 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99622 * 180.27904 * 11 10 8 14 14 N 1.31622 * 119.99400 * 179.72313 * 13 11 10 15 15 Si 1.86800 * 120.00144 * 359.72086 * 13 11 10 16 16 H 1.48506 * 109.46719 * 90.00417 * 15 13 11 17 17 H 1.48501 * 109.46793 * 210.00071 * 15 13 11 18 18 H 1.48489 * 109.47333 * 330.00315 * 15 13 11 19 19 C 1.55153 * 101.58297 * 322.99022 * 8 7 6 20 20 C 1.47023 * 125.64936 * 179.97438 * 6 4 3 21 21 H 1.08997 * 109.88266 * 59.56524 * 20 6 4 22 22 C 1.53003 * 110.00953 * 298.47391 * 20 6 4 23 23 N 1.34405 * 108.45728 * 179.77033 * 3 2 1 24 24 N 1.28767 * 109.52429 * 0.23044 * 23 3 2 25 25 N 1.34820 * 126.57798 * 180.16460 * 2 1 3 26 26 C 1.46496 * 126.59618 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47071 * 89.99638 * 1 2 3 28 28 H 1.08994 * 109.47506 * 210.00077 * 1 2 3 29 29 H 1.09005 * 109.46844 * 330.00425 * 1 2 3 30 30 H 1.09006 * 110.36998 * 85.24224 * 7 6 4 31 31 H 1.09005 * 110.37180 * 322.92034 * 7 6 4 32 32 H 0.97000 * 120.00410 * 272.80980 * 10 8 7 33 33 H 0.97009 * 119.99492 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.72723 * 153.86049 * 19 8 7 35 35 H 1.09000 * 110.72556 * 277.13946 * 19 8 7 36 36 H 1.08999 * 109.47244 * 302.11457 * 22 20 6 37 37 H 1.09004 * 109.46704 * 62.11492 * 22 20 6 38 38 H 1.09000 * 109.46938 * 182.11142 * 22 20 6 39 39 H 1.08995 * 109.47553 * 270.27761 * 26 25 2 40 40 H 1.09007 * 109.46596 * 30.27481 * 26 25 2 41 41 H 1.08998 * 109.47414 * 150.26920 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 0.0008 5 8 0.6860 2.7628 -0.0038 6 7 2.7818 3.4987 0.0065 7 6 4.2459 3.3265 0.0112 8 6 4.7972 4.6365 0.6275 9 1 5.8193 4.8238 0.2984 10 7 4.7171 4.6032 2.0899 11 6 5.7856 4.1623 2.8243 12 1 6.6872 3.8388 2.3253 13 6 5.7076 4.1253 4.2097 14 7 6.7327 3.6965 4.9152 15 14 4.1480 4.6842 5.0727 16 1 3.2321 3.5270 5.2382 17 1 4.4920 5.2382 6.4069 18 1 3.4802 5.7316 4.2590 19 6 3.8220 5.6912 0.0410 20 6 2.4761 4.9368 0.0074 21 1 1.8872 5.1901 0.8889 22 6 1.7026 5.3084 -1.2593 23 7 3.5984 0.6788 0.0051 24 7 3.6298 -0.6085 0.0034 25 7 2.3104 -1.0827 -0.0031 26 6 1.8863 -2.4849 -0.0077 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 4.6164 3.2006 -1.0062 31 1 4.5254 2.4710 0.6262 32 1 3.9073 4.8933 2.5381 33 1 6.6783 3.6710 5.8835 34 1 3.7594 6.5629 0.6924 35 1 4.1265 5.9810 -0.9647 36 1 2.2895 5.0360 -2.1365 37 1 0.7538 4.7721 -1.2760 38 1 1.5134 6.3819 -1.2677 39 1 1.7760 -2.8345 1.0188 40 1 0.9317 -2.5741 -0.5264 41 1 2.6355 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988463821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:09 Heat of formation + Delta-G solvation = 85.636048 kcal Electronic energy + Delta-G solvation = -24424.504988 eV Core-core repulsion = 20956.503415 eV Total energy + Delta-G solvation = -3468.001574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.17442 -39.65727 -37.35276 -34.95744 -34.02618 -32.38503 -31.56066 -31.32226 -28.91269 -28.01074 -27.52645 -25.46079 -23.87752 -23.17443 -21.78813 -20.90221 -19.89560 -19.05014 -17.64897 -17.23540 -16.47272 -16.08796 -15.73541 -14.98839 -14.51101 -14.22178 -14.03531 -13.87826 -13.54774 -13.50133 -13.24570 -13.10648 -12.89641 -12.68893 -12.59716 -12.23482 -12.00148 -11.83936 -11.81094 -11.33946 -11.19153 -10.91211 -10.69415 -10.42006 -10.29859 -10.15902 -10.01470 -9.71627 -9.55991 -9.07471 -8.97038 -8.21498 -7.24668 -5.74817 -3.10444 1.15711 1.91034 2.03428 3.27688 3.39491 3.43808 3.47593 3.53798 4.22634 4.25709 4.56684 4.61514 4.69014 4.74643 4.98310 5.03011 5.16062 5.21969 5.25678 5.32243 5.40719 5.57031 5.58529 5.64836 5.69331 5.80321 5.86385 5.90993 6.03091 6.22015 6.29027 6.35109 6.39462 6.47817 6.65057 6.67547 6.95891 7.86644 8.01225 8.05940 8.43775 8.46123 9.21922 9.94556 10.13459 11.43241 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.005976 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.179294 B = 4684.627379 C = 5722.728712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.115 3.885 3 C -0.095 4.095 4 C 0.618 3.382 5 O -0.553 6.553 6 N -0.586 5.586 7 C 0.071 3.929 8 C 0.172 3.828 9 H 0.083 0.917 10 N -0.736 5.736 11 C -0.243 4.243 12 H 0.094 0.906 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.880 3.120 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.277 1.277 19 C -0.142 4.142 20 C 0.137 3.863 21 H 0.072 0.928 22 C -0.159 4.159 23 N -0.186 5.186 24 N -0.070 5.070 25 N -0.369 5.369 26 C 0.089 3.911 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 -7.526 -14.086 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C -0.235 4.235 4 C 0.405 3.595 5 O -0.432 6.432 6 N -0.317 5.317 7 C -0.055 4.055 8 C 0.060 3.940 9 H 0.101 0.899 10 N -0.377 5.377 11 C -0.373 4.373 12 H 0.111 0.889 13 C -0.188 4.188 14 N -0.579 5.579 15 Si 0.711 3.289 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.203 1.203 19 C -0.181 4.181 20 C 0.034 3.966 21 H 0.090 0.910 22 C -0.217 4.217 23 N -0.059 5.059 24 N -0.050 5.050 25 N -0.155 5.155 26 C -0.052 4.052 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.412 -7.965 -13.978 20.320 hybrid contribution -1.981 0.207 0.850 2.165 sum -14.393 -7.758 -13.128 20.969 Atomic orbital electron populations 1.20665 0.84884 1.05283 1.04267 1.21834 0.96057 0.86438 0.97923 1.21147 0.89029 0.95263 1.18022 1.16293 0.84605 0.81996 0.76642 1.90694 1.15641 1.83510 1.53322 1.48218 1.07948 1.05311 1.70206 1.23581 0.77896 1.03413 1.00590 1.21350 0.97192 0.90654 0.84768 0.89887 1.42680 1.16179 1.78554 1.00319 1.19091 0.93730 1.35499 0.88954 0.88856 1.24636 0.96913 1.01143 0.96102 1.69703 1.29896 1.52622 1.05671 0.86614 0.84255 0.78640 0.79419 1.21287 1.21702 1.20297 1.23131 0.94213 0.98942 1.01817 1.21534 0.96875 0.79923 0.98304 0.91000 1.22127 1.01148 1.01286 0.97122 1.74785 1.18756 1.03489 1.08895 1.82056 0.95667 1.03934 1.23294 1.50287 1.06685 1.07542 1.50986 1.22105 1.02161 0.76407 1.04571 0.89337 0.90903 0.87014 0.92344 0.87785 0.80562 0.93107 0.89840 0.90296 0.92682 0.91500 0.91932 0.89428 0.88803 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.38 36.00 0.34 -0.56 16 2 C 0.12 1.57 7.02 -81.88 -0.57 1.00 16 3 C -0.10 -1.65 6.84 -83.55 -0.57 -2.22 16 4 C 0.62 11.27 7.64 -12.48 -0.10 11.17 16 5 O -0.55 -10.22 13.77 5.28 0.07 -10.14 16 6 N -0.59 -10.47 3.07 -164.23 -0.50 -10.97 16 7 C 0.07 1.30 5.82 -2.53 -0.01 1.28 16 8 C 0.17 3.24 3.72 -65.78 -0.24 3.00 16 9 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 10 N -0.74 -17.38 5.04 -51.35 -0.26 -17.64 16 11 C -0.24 -6.83 10.44 -15.06 -0.16 -6.99 16 12 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 14 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 15 Si 0.88 22.76 27.73 -169.99 -4.71 18.05 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 19 C -0.14 -2.14 6.07 -24.90 -0.15 -2.30 16 20 C 0.14 2.17 3.45 -66.95 -0.23 1.94 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 22 C -0.16 -2.11 9.10 37.16 0.34 -1.78 16 23 N -0.19 -3.46 9.39 32.85 0.31 -3.15 16 24 N -0.07 -1.17 13.78 60.35 0.83 -0.34 16 25 N -0.37 -4.66 4.03 -63.59 -0.26 -4.91 16 26 C 0.09 0.58 11.17 59.84 0.67 1.25 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 29 H 0.11 1.32 6.43 -51.93 -0.33 0.99 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.23 6.13 -51.93 -0.32 1.92 16 32 H 0.36 8.64 5.73 -40.82 -0.23 8.41 16 33 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.98 6.90 -51.93 -0.36 0.62 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.34 7.78 -51.92 -0.40 -0.07 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -35.47 335.95 -5.33 -40.80 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.86 Total: 6.06 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.79 Total: 5.94 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: 0.90 Total: -65.76 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.47 -5.33 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988463821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.436 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds