Wall clock time and date at job start Tue Mar 31 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36597 * 126.58147 * 2 1 4 4 C 1.47517 * 125.76970 * 0.03702 * 3 2 1 5 5 O 1.21594 * 120.00253 * 359.71352 * 4 3 2 6 6 N 1.34782 * 119.99870 * 179.71579 * 4 3 2 7 7 C 1.47422 * 125.64734 * 0.05300 * 6 4 3 8 8 C 1.54906 * 104.83284 * 204.08173 * 7 6 4 9 9 H 1.09000 * 111.03945 * 204.89940 * 8 7 6 10 10 N 1.46504 * 111.00538 * 81.06220 * 8 7 6 11 11 C 1.36943 * 119.99781 * 92.80655 * 10 8 7 12 12 H 1.08002 * 119.99788 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99622 * 180.27904 * 11 10 8 14 14 N 1.31622 * 119.99400 * 179.72313 * 13 11 10 15 15 Si 1.86800 * 120.00144 * 359.72086 * 13 11 10 16 16 H 1.48506 * 109.46719 * 90.00417 * 15 13 11 17 17 H 1.48501 * 109.46793 * 210.00071 * 15 13 11 18 18 H 1.48489 * 109.47333 * 330.00315 * 15 13 11 19 19 C 1.55153 * 101.58297 * 322.99022 * 8 7 6 20 20 C 1.47023 * 125.64936 * 179.97438 * 6 4 3 21 21 H 1.08997 * 109.88266 * 59.56524 * 20 6 4 22 22 C 1.53003 * 110.00953 * 298.47391 * 20 6 4 23 23 N 1.34405 * 108.45728 * 179.77033 * 3 2 1 24 24 N 1.28767 * 109.52429 * 0.23044 * 23 3 2 25 25 N 1.34820 * 126.57798 * 180.16460 * 2 1 3 26 26 C 1.46496 * 126.59618 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47071 * 89.99638 * 1 2 3 28 28 H 1.08994 * 109.47506 * 210.00077 * 1 2 3 29 29 H 1.09005 * 109.46844 * 330.00425 * 1 2 3 30 30 H 1.09006 * 110.36998 * 85.24224 * 7 6 4 31 31 H 1.09005 * 110.37180 * 322.92034 * 7 6 4 32 32 H 0.97000 * 120.00410 * 272.80980 * 10 8 7 33 33 H 0.97009 * 119.99492 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.72723 * 153.86049 * 19 8 7 35 35 H 1.09000 * 110.72556 * 277.13946 * 19 8 7 36 36 H 1.08999 * 109.47244 * 302.11457 * 22 20 6 37 37 H 1.09004 * 109.46704 * 62.11492 * 22 20 6 38 38 H 1.09000 * 109.46938 * 182.11142 * 22 20 6 39 39 H 1.08995 * 109.47553 * 270.27761 * 26 25 2 40 40 H 1.09007 * 109.46596 * 30.27481 * 26 25 2 41 41 H 1.08998 * 109.47414 * 150.26920 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 0.0008 5 8 0.6860 2.7628 -0.0038 6 7 2.7818 3.4987 0.0065 7 6 4.2459 3.3265 0.0112 8 6 4.7972 4.6365 0.6275 9 1 5.8193 4.8238 0.2984 10 7 4.7171 4.6032 2.0899 11 6 5.7856 4.1623 2.8243 12 1 6.6872 3.8388 2.3253 13 6 5.7076 4.1253 4.2097 14 7 6.7327 3.6965 4.9152 15 14 4.1480 4.6842 5.0727 16 1 3.2321 3.5270 5.2382 17 1 4.4920 5.2382 6.4069 18 1 3.4802 5.7316 4.2590 19 6 3.8220 5.6912 0.0410 20 6 2.4761 4.9368 0.0074 21 1 1.8872 5.1901 0.8889 22 6 1.7026 5.3084 -1.2593 23 7 3.5984 0.6788 0.0051 24 7 3.6298 -0.6085 0.0034 25 7 2.3104 -1.0827 -0.0031 26 6 1.8863 -2.4849 -0.0077 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 4.6164 3.2006 -1.0062 31 1 4.5254 2.4710 0.6262 32 1 3.9073 4.8933 2.5381 33 1 6.6783 3.6710 5.8835 34 1 3.7594 6.5629 0.6924 35 1 4.1265 5.9810 -0.9647 36 1 2.2895 5.0360 -2.1365 37 1 0.7538 4.7721 -1.2760 38 1 1.5134 6.3819 -1.2677 39 1 1.7760 -2.8345 1.0188 40 1 0.9317 -2.5741 -0.5264 41 1 2.6355 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988463821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:08 Heat of formation + Delta-G solvation = 59.134272 kcal Electronic energy + Delta-G solvation = -24425.654192 eV Core-core repulsion = 20956.503415 eV Total energy + Delta-G solvation = -3469.150777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.29903 -41.00918 -38.77669 -36.03820 -35.80818 -33.47671 -33.43353 -32.58034 -30.59420 -29.00019 -28.33302 -26.73668 -25.51589 -24.82580 -22.97451 -22.11505 -21.30833 -20.30062 -19.74074 -18.45401 -17.69628 -17.33708 -16.87696 -16.41979 -16.15146 -15.77656 -15.29364 -15.20966 -14.73778 -14.66810 -14.38565 -14.18767 -14.11137 -13.96451 -13.65974 -13.49360 -13.31355 -13.17436 -13.01250 -12.93935 -12.73924 -12.38096 -12.20862 -11.99465 -11.83718 -11.75217 -11.49678 -11.15690 -11.10351 -10.94448 -10.24786 -9.68316 -9.22857 -8.02770 -5.34813 0.10593 0.62257 1.15933 1.32010 1.35056 1.41391 1.99451 2.22543 2.45322 3.15768 3.27493 3.37629 3.56106 3.63104 3.64548 3.83972 3.89779 4.11459 4.30702 4.34495 4.38811 4.49031 4.58701 4.62869 4.65771 4.70866 4.75212 4.79122 4.87701 5.02849 5.06540 5.12373 5.20177 5.26868 5.36036 5.51621 5.57622 5.79320 6.21782 6.49026 6.84564 7.06951 7.13775 7.83336 8.00727 9.18752 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.005976 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.179294 B = 4684.627379 C = 5722.728712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.128 3.872 3 C -0.135 4.135 4 C 0.611 3.389 5 O -0.561 6.561 6 N -0.592 5.592 7 C 0.084 3.916 8 C 0.159 3.841 9 H 0.086 0.914 10 N -0.739 5.739 11 C -0.220 4.220 12 H 0.065 0.935 13 C -0.060 4.060 14 N -0.981 5.981 15 Si 0.943 3.057 16 H -0.294 1.294 17 H -0.292 1.292 18 H -0.250 1.250 19 C -0.124 4.124 20 C 0.130 3.870 21 H 0.057 0.943 22 C -0.147 4.147 23 N -0.220 5.220 24 N -0.103 5.103 25 N -0.354 5.354 26 C 0.073 3.927 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.362 0.638 33 H 0.256 0.744 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 -7.524 -15.704 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 C -0.275 4.275 4 C 0.399 3.601 5 O -0.441 6.441 6 N -0.323 5.323 7 C -0.041 4.041 8 C 0.049 3.951 9 H 0.104 0.896 10 N -0.381 5.381 11 C -0.351 4.351 12 H 0.083 0.917 13 C -0.252 4.252 14 N -0.632 5.632 15 Si 0.772 3.228 16 H -0.221 1.221 17 H -0.218 1.218 18 H -0.175 1.175 19 C -0.162 4.162 20 C 0.027 3.973 21 H 0.075 0.925 22 C -0.205 4.205 23 N -0.093 5.093 24 N -0.083 5.083 25 N -0.140 5.140 26 C -0.066 4.066 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.168 -7.967 -15.661 23.212 hybrid contribution -1.153 0.052 1.245 1.698 sum -16.320 -7.916 -14.416 23.170 Atomic orbital electron populations 1.20808 0.81808 1.06113 1.05881 1.22392 0.97572 0.85616 0.95554 1.21386 0.89598 0.95936 1.20564 1.16530 0.84624 0.82564 0.76420 1.90671 1.15712 1.83852 1.53880 1.48326 1.07464 1.06223 1.70335 1.23269 0.78644 1.01443 1.00788 1.21632 0.98680 0.92543 0.82209 0.89606 1.42675 1.14813 1.78366 1.02241 1.19072 0.93770 1.33143 0.89165 0.91718 1.25357 1.00098 1.02631 0.97065 1.69868 1.32353 1.55312 1.05694 0.85577 0.80385 0.78466 0.78374 1.22137 1.21849 1.17474 1.23073 0.92193 0.97525 1.03458 1.21715 0.97431 0.78967 0.99178 0.92482 1.22027 0.99933 1.02687 0.95814 1.74746 1.19979 1.04453 1.10090 1.81916 0.98161 1.03515 1.24689 1.50653 1.05216 1.09414 1.48742 1.22710 1.04298 0.73188 1.06404 0.87088 0.87053 0.89086 0.90519 0.91217 0.80568 0.93517 0.89249 0.86800 0.91830 0.93013 0.89339 0.87837 0.84935 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.38 71.23 0.67 -0.78 16 2 C 0.13 3.32 7.02 41.71 0.29 3.61 16 3 C -0.13 -4.68 6.84 40.81 0.28 -4.40 16 4 C 0.61 22.19 7.64 86.69 0.66 22.85 16 5 O -0.56 -20.41 13.77 -4.01 -0.06 -20.47 16 6 N -0.59 -20.84 3.07 -791.77 -2.43 -23.27 16 7 C 0.08 3.10 5.82 86.85 0.51 3.60 16 8 C 0.16 5.87 3.72 46.38 0.17 6.04 16 9 H 0.09 3.12 8.09 -2.39 -0.02 3.10 16 10 N -0.74 -34.81 5.04 -316.37 -1.59 -36.40 16 11 C -0.22 -12.67 10.44 84.03 0.88 -11.80 16 12 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 13 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 14 N -0.98 -64.26 13.97 21.65 0.30 -63.96 16 15 Si 0.94 47.63 27.73 68.60 1.90 49.53 16 16 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 17 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 18 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 19 C -0.12 -3.41 6.07 31.78 0.19 -3.22 16 20 C 0.13 3.88 3.45 45.34 0.16 4.04 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.15 -3.50 9.10 71.98 0.66 -2.85 16 23 N -0.22 -8.42 9.39 -50.00 -0.47 -8.89 16 24 N -0.10 -3.51 13.78 37.02 0.51 -3.00 16 25 N -0.35 -8.40 4.03 -355.11 -1.43 -9.83 16 26 C 0.07 0.71 11.17 127.77 1.43 2.14 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.11 0.97 7.84 -2.39 -0.02 0.95 16 29 H 0.09 1.98 6.43 -2.38 -0.02 1.97 16 30 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.07 3.11 6.13 -2.38 -0.01 3.09 16 32 H 0.36 16.93 5.73 -92.71 -0.53 16.40 16 33 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.39 7.85 -2.39 -0.02 2.37 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.41 6.90 -2.38 -0.02 1.39 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.13 0.32 7.78 -2.38 -0.02 0.30 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.27 335.95 3.55 -77.72 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.46 Total: 22.49 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.36 Total: 16.07 kcal Atomic # 7 Polarization: -140.23 SS G_CDS: -5.11 Total: -145.34 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.47 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.90 Total: 49.53 kcal Total: -81.27 3.55 -77.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988463821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.855 kcal (2) G-P(sol) polarization free energy of solvation -81.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds