Wall clock time and date at job start Tue Mar 31 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36590 * 126.58116 * 2 1 4 4 C 1.47521 * 125.77009 * 0.03129 * 3 2 1 5 5 O 1.21596 * 120.00323 * 359.72285 * 4 3 2 6 6 N 1.34779 * 119.99968 * 179.71778 * 4 3 2 7 7 C 1.47421 * 125.64950 * 359.97438 * 6 4 3 8 8 C 1.54916 * 104.83435 * 204.15166 * 7 6 4 9 9 H 1.09003 * 111.03464 * 81.07861 * 8 7 6 10 10 N 1.46499 * 111.00526 * 204.91702 * 8 7 6 11 11 C 1.36939 * 119.99933 * 267.46956 * 10 8 7 12 12 H 1.08001 * 119.99700 * 359.72658 * 11 10 8 13 13 C 1.38810 * 120.00095 * 179.71972 * 11 10 8 14 14 N 1.31624 * 119.99740 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47080 * 120.00466 * 15 13 11 18 18 H 1.48506 * 109.47018 * 240.00565 * 15 13 11 19 19 C 1.55159 * 101.57848 * 322.99121 * 8 7 6 20 20 C 1.47024 * 125.64931 * 180.02562 * 6 4 3 21 21 H 1.09006 * 109.88273 * 59.49887 * 20 6 4 22 22 C 1.52999 * 110.01027 * 298.41025 * 20 6 4 23 23 N 1.34404 * 108.45719 * 179.77200 * 3 2 1 24 24 N 1.28751 * 109.52234 * 0.22555 * 23 3 2 25 25 N 1.34814 * 126.57805 * 180.16221 * 2 1 3 26 26 C 1.46506 * 126.59852 * 359.97032 * 25 2 1 27 27 H 1.09007 * 109.46805 * 90.00208 * 1 2 3 28 28 H 1.09002 * 109.47460 * 210.00168 * 1 2 3 29 29 H 1.08993 * 109.47017 * 330.00542 * 1 2 3 30 30 H 1.08996 * 110.37002 * 85.31268 * 7 6 4 31 31 H 1.09007 * 110.36737 * 322.98876 * 7 6 4 32 32 H 0.97001 * 119.99790 * 87.18929 * 10 8 7 33 33 H 0.96998 * 119.99409 * 179.97438 * 14 13 11 34 34 H 1.08992 * 110.71853 * 153.86948 * 19 8 7 35 35 H 1.09001 * 110.71709 * 276.96267 * 19 8 7 36 36 H 1.09003 * 109.47244 * 302.11381 * 22 20 6 37 37 H 1.09001 * 109.47176 * 62.11117 * 22 20 6 38 38 H 1.08998 * 109.47194 * 182.11514 * 22 20 6 39 39 H 1.09000 * 109.47013 * 270.27465 * 26 25 2 40 40 H 1.08998 * 109.46301 * 30.27358 * 26 25 2 41 41 H 1.08994 * 109.47304 * 150.27220 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 0.0007 5 8 0.6860 2.7628 -0.0038 6 7 2.7818 3.4987 0.0063 7 6 4.2459 3.3266 0.0128 8 6 4.7964 4.6365 0.6300 9 1 4.7360 4.6119 1.7181 10 7 6.1706 4.8879 0.1887 11 6 7.2239 4.4392 0.9400 12 1 7.0416 3.9039 1.8601 13 6 8.5259 4.6724 0.5189 14 7 8.7480 5.3252 -0.6023 15 14 9.9627 4.0610 1.5441 16 1 9.4489 3.3623 2.7495 17 1 10.7808 3.1197 0.7379 18 1 10.8007 5.2145 1.9595 19 6 3.8218 5.6912 0.0426 20 6 2.4761 4.9368 0.0082 21 1 1.8866 5.1894 0.8896 22 6 1.7032 5.3094 -1.2586 23 7 3.5984 0.6787 0.0051 24 7 3.6298 -0.6084 0.0034 25 7 2.3104 -1.0826 -0.0031 26 6 1.8864 -2.4850 -0.0064 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 4.6176 3.2009 -1.0041 31 1 4.5246 2.4709 0.6279 32 1 6.3342 5.3687 -0.6377 33 1 9.6578 5.4884 -0.8963 34 1 3.7586 6.5628 0.6940 35 1 4.1294 5.9834 -0.9615 36 1 2.2905 5.0376 -2.1357 37 1 0.7544 4.7731 -1.2762 38 1 1.5140 6.3828 -1.2663 39 1 1.7769 -2.8339 1.0204 40 1 0.9315 -2.5744 -0.5243 41 1 2.6352 -3.0897 -0.5178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988463823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:15 Heat of formation + Delta-G solvation = 81.315971 kcal Electronic energy + Delta-G solvation = -23939.215714 eV Core-core repulsion = 20471.026807 eV Total energy + Delta-G solvation = -3468.188906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.24866 -39.62365 -37.28063 -35.02332 -34.10544 -32.44443 -31.53581 -31.23020 -28.43149 -27.98091 -27.58704 -25.32700 -24.06671 -23.29024 -21.72080 -20.80459 -20.08345 -19.06521 -17.37561 -17.14414 -16.52195 -16.06507 -15.72162 -15.12572 -14.46800 -14.27286 -14.04985 -13.71438 -13.50716 -13.47813 -13.24729 -13.16987 -13.01165 -12.75766 -12.48657 -12.18067 -12.07753 -11.89014 -11.58813 -11.20832 -11.03723 -10.88959 -10.59903 -10.46539 -10.27254 -10.14801 -9.91209 -9.77703 -9.65734 -9.14321 -8.91718 -8.22217 -6.98507 -5.76233 -3.05926 1.08628 1.84021 1.96711 3.23351 3.46059 3.46895 3.52608 3.54500 4.16300 4.19627 4.50363 4.58412 4.67649 4.67935 4.93223 5.06620 5.18378 5.25001 5.27864 5.32888 5.52020 5.57428 5.62719 5.68948 5.79651 5.85020 5.91370 5.94695 6.21586 6.26557 6.31755 6.38918 6.45590 6.58706 6.69315 6.85202 6.98469 7.73965 7.84154 8.00126 8.39359 8.42572 9.53700 10.07624 10.42792 11.46154 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.004707 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.737360 B = 5946.889191 C = 7555.268312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.115 3.885 3 C -0.098 4.098 4 C 0.615 3.385 5 O -0.553 6.553 6 N -0.592 5.592 7 C 0.075 3.925 8 C 0.170 3.830 9 H 0.066 0.934 10 N -0.710 5.710 11 C -0.242 4.242 12 H 0.073 0.927 13 C -0.010 4.010 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.138 4.138 20 C 0.140 3.860 21 H 0.074 0.926 22 C -0.160 4.160 23 N -0.186 5.186 24 N -0.070 5.070 25 N -0.370 5.370 26 C 0.089 3.911 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.154 -11.396 0.168 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.402 3.598 5 O -0.432 6.432 6 N -0.324 5.324 7 C -0.050 4.050 8 C 0.058 3.942 9 H 0.084 0.916 10 N -0.350 5.350 11 C -0.373 4.373 12 H 0.091 0.909 13 C -0.206 4.206 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.177 4.177 20 C 0.036 3.964 21 H 0.092 0.908 22 C -0.218 4.218 23 N -0.059 5.059 24 N -0.049 5.049 25 N -0.155 5.155 26 C -0.053 4.053 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.170 -11.808 0.302 21.672 hybrid contribution 0.091 -0.325 0.118 0.358 sum -18.080 -12.133 0.420 21.778 Atomic orbital electron populations 1.20671 0.84823 1.05194 1.04404 1.21850 0.96067 0.86425 0.97895 1.21199 0.89000 0.95343 1.18159 1.16332 0.84647 0.81984 0.76821 1.90697 1.15630 1.83511 1.53347 1.48389 1.08313 1.05541 1.70142 1.23690 0.76274 1.02611 1.02448 1.21343 0.85450 0.90384 0.97022 0.91567 1.42304 0.98582 1.66646 1.27463 1.19318 0.85389 1.29406 1.03180 0.90901 1.24738 0.97363 1.00923 0.97560 1.69675 1.19810 1.45757 1.22685 0.86121 0.82818 0.77914 0.79371 1.20464 1.21820 1.21891 1.23052 0.93382 0.98626 1.02650 1.21544 0.96849 0.79589 0.98369 0.90845 1.22129 1.00990 1.01341 0.97363 1.74857 1.18703 1.03469 1.08905 1.82088 0.95629 1.03959 1.23258 1.50327 1.06710 1.07574 1.50938 1.22111 1.02267 0.76396 1.04485 0.89280 0.90928 0.86987 0.91405 0.89277 0.77905 0.93514 0.90342 0.90387 0.92548 0.91582 0.91842 0.89462 0.88765 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.38 36.01 0.34 -0.45 16 2 C 0.12 1.44 7.02 -81.88 -0.57 0.86 16 3 C -0.10 -1.59 6.84 -83.55 -0.57 -2.16 16 4 C 0.62 10.52 7.64 -12.48 -0.10 10.43 16 5 O -0.55 -9.52 13.77 5.28 0.07 -9.44 16 6 N -0.59 -10.25 3.07 -164.23 -0.50 -10.75 16 7 C 0.08 1.46 5.82 -2.53 -0.01 1.45 16 8 C 0.17 3.42 3.71 -65.78 -0.24 3.17 16 9 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 10 N -0.71 -17.62 5.24 -51.34 -0.27 -17.89 16 11 C -0.24 -6.68 9.96 -15.06 -0.15 -6.83 16 12 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 13 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 14 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 15 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 19 C -0.14 -2.27 6.12 -24.90 -0.15 -2.42 16 20 C 0.14 2.16 3.45 -66.96 -0.23 1.93 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.16 -2.23 9.11 37.16 0.34 -1.89 16 23 N -0.19 -3.34 9.39 32.84 0.31 -3.03 16 24 N -0.07 -1.12 13.78 60.35 0.83 -0.29 16 25 N -0.37 -4.30 4.03 -63.59 -0.26 -4.56 16 26 C 0.09 0.50 11.18 59.85 0.67 1.17 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.38 7.84 -51.93 -0.41 -0.02 16 29 H 0.11 1.14 6.43 -51.93 -0.33 0.81 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.84 6.14 -51.93 -0.32 1.52 16 32 H 0.39 10.12 7.76 -40.82 -0.32 9.80 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.30 7.72 -51.93 -0.40 0.90 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.97 6.91 -51.93 -0.36 0.61 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.27 7.78 -51.93 -0.40 -0.13 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -33.71 338.88 -5.68 -39.39 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.89 Total: 6.32 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.78 Total: 4.89 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.84 Total: -63.78 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.71 -5.68 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988463823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.708 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds