Wall clock time and date at job start Tue Mar 31 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36590 * 126.58116 * 2 1 4 4 C 1.47521 * 125.77009 * 0.03129 * 3 2 1 5 5 O 1.21596 * 120.00323 * 359.72285 * 4 3 2 6 6 N 1.34779 * 119.99968 * 179.71778 * 4 3 2 7 7 C 1.47421 * 125.64950 * 359.97438 * 6 4 3 8 8 C 1.54916 * 104.83435 * 204.15166 * 7 6 4 9 9 H 1.09003 * 111.03464 * 81.07861 * 8 7 6 10 10 N 1.46499 * 111.00526 * 204.91702 * 8 7 6 11 11 C 1.36939 * 119.99933 * 267.46956 * 10 8 7 12 12 H 1.08001 * 119.99700 * 359.72658 * 11 10 8 13 13 C 1.38810 * 120.00095 * 179.71972 * 11 10 8 14 14 N 1.31624 * 119.99740 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00044 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47201 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47080 * 120.00466 * 15 13 11 18 18 H 1.48506 * 109.47018 * 240.00565 * 15 13 11 19 19 C 1.55159 * 101.57848 * 322.99121 * 8 7 6 20 20 C 1.47024 * 125.64931 * 180.02562 * 6 4 3 21 21 H 1.09006 * 109.88273 * 59.49887 * 20 6 4 22 22 C 1.52999 * 110.01027 * 298.41025 * 20 6 4 23 23 N 1.34404 * 108.45719 * 179.77200 * 3 2 1 24 24 N 1.28751 * 109.52234 * 0.22555 * 23 3 2 25 25 N 1.34814 * 126.57805 * 180.16221 * 2 1 3 26 26 C 1.46506 * 126.59852 * 359.97032 * 25 2 1 27 27 H 1.09007 * 109.46805 * 90.00208 * 1 2 3 28 28 H 1.09002 * 109.47460 * 210.00168 * 1 2 3 29 29 H 1.08993 * 109.47017 * 330.00542 * 1 2 3 30 30 H 1.08996 * 110.37002 * 85.31268 * 7 6 4 31 31 H 1.09007 * 110.36737 * 322.98876 * 7 6 4 32 32 H 0.97001 * 119.99790 * 87.18929 * 10 8 7 33 33 H 0.96998 * 119.99409 * 179.97438 * 14 13 11 34 34 H 1.08992 * 110.71853 * 153.86948 * 19 8 7 35 35 H 1.09001 * 110.71709 * 276.96267 * 19 8 7 36 36 H 1.09003 * 109.47244 * 302.11381 * 22 20 6 37 37 H 1.09001 * 109.47176 * 62.11117 * 22 20 6 38 38 H 1.08998 * 109.47194 * 182.11514 * 22 20 6 39 39 H 1.09000 * 109.47013 * 270.27465 * 26 25 2 40 40 H 1.08998 * 109.46301 * 30.27358 * 26 25 2 41 41 H 1.08994 * 109.47304 * 150.27220 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 0.0007 5 8 0.6860 2.7628 -0.0038 6 7 2.7818 3.4987 0.0063 7 6 4.2459 3.3266 0.0128 8 6 4.7964 4.6365 0.6300 9 1 4.7360 4.6119 1.7181 10 7 6.1706 4.8879 0.1887 11 6 7.2239 4.4392 0.9400 12 1 7.0416 3.9039 1.8601 13 6 8.5259 4.6724 0.5189 14 7 8.7480 5.3252 -0.6023 15 14 9.9627 4.0610 1.5441 16 1 9.4489 3.3623 2.7495 17 1 10.7808 3.1197 0.7379 18 1 10.8007 5.2145 1.9595 19 6 3.8218 5.6912 0.0426 20 6 2.4761 4.9368 0.0082 21 1 1.8866 5.1894 0.8896 22 6 1.7032 5.3094 -1.2586 23 7 3.5984 0.6787 0.0051 24 7 3.6298 -0.6084 0.0034 25 7 2.3104 -1.0826 -0.0031 26 6 1.8864 -2.4850 -0.0064 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 4.6176 3.2009 -1.0041 31 1 4.5246 2.4709 0.6279 32 1 6.3342 5.3687 -0.6377 33 1 9.6578 5.4884 -0.8963 34 1 3.7586 6.5628 0.6940 35 1 4.1294 5.9834 -0.9615 36 1 2.2905 5.0376 -2.1357 37 1 0.7544 4.7731 -1.2762 38 1 1.5140 6.3828 -1.2663 39 1 1.7769 -2.8339 1.0204 40 1 0.9315 -2.5744 -0.5243 41 1 2.6352 -3.0897 -0.5178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988463823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:13 Heat of formation + Delta-G solvation = 57.108694 kcal Electronic energy + Delta-G solvation = -23940.265420 eV Core-core repulsion = 20471.026807 eV Total energy + Delta-G solvation = -3469.238613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.31192 -40.98096 -38.70641 -36.07428 -35.85189 -33.47254 -33.25922 -32.58023 -30.09364 -28.98047 -28.32225 -26.70520 -25.87832 -24.72791 -22.84560 -22.06476 -21.49572 -20.31858 -19.26752 -18.44080 -17.65362 -17.28896 -16.94592 -16.56234 -16.05073 -15.49082 -15.31588 -15.27242 -14.81403 -14.55360 -14.27451 -14.16411 -14.09104 -13.93869 -13.63990 -13.41506 -13.32020 -13.04314 -12.93221 -12.86247 -12.76909 -12.37836 -12.13549 -12.03451 -11.92247 -11.65947 -11.46845 -11.14508 -11.09236 -10.89080 -10.25231 -9.62074 -9.03323 -7.94129 -5.23414 0.11069 0.60351 1.16256 1.48300 1.49716 1.59256 1.94560 2.19836 2.57271 3.13531 3.35539 3.38263 3.61560 3.64042 3.80834 3.89868 4.01955 4.19835 4.31152 4.32898 4.37506 4.49784 4.53025 4.60008 4.65325 4.66621 4.77826 4.81292 4.88784 4.99359 5.07687 5.12016 5.22093 5.27913 5.39674 5.46590 5.54051 5.55902 6.27467 6.46083 6.83778 7.12234 7.34923 8.05820 8.31071 9.29152 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.004707 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.737360 B = 5946.889191 C = 7555.268312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.133 3.867 3 C -0.136 4.136 4 C 0.614 3.386 5 O -0.555 6.555 6 N -0.597 5.597 7 C 0.097 3.903 8 C 0.163 3.837 9 H 0.064 0.936 10 N -0.721 5.721 11 C -0.242 4.242 12 H 0.074 0.926 13 C -0.068 4.068 14 N -0.966 5.966 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.295 1.295 18 H -0.290 1.290 19 C -0.124 4.124 20 C 0.139 3.861 21 H 0.086 0.914 22 C -0.151 4.151 23 N -0.226 5.226 24 N -0.104 5.104 25 N -0.354 5.354 26 C 0.072 3.928 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.525 -12.714 0.828 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.007 4.007 3 C -0.276 4.276 4 C 0.402 3.598 5 O -0.434 6.434 6 N -0.329 5.329 7 C -0.029 4.029 8 C 0.053 3.947 9 H 0.082 0.918 10 N -0.360 5.360 11 C -0.373 4.373 12 H 0.092 0.908 13 C -0.261 4.261 14 N -0.617 5.617 15 Si 0.798 3.202 16 H -0.193 1.193 17 H -0.223 1.223 18 H -0.217 1.217 19 C -0.163 4.163 20 C 0.036 3.964 21 H 0.104 0.896 22 C -0.209 4.209 23 N -0.098 5.098 24 N -0.083 5.083 25 N -0.140 5.140 26 C -0.066 4.066 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.588 -13.171 0.986 24.460 hybrid contribution 0.650 -0.054 -0.078 0.657 sum -19.938 -13.225 0.908 23.943 Atomic orbital electron populations 1.20833 0.81589 1.06438 1.05787 1.22403 0.97577 0.85440 0.95264 1.21388 0.89491 0.95940 1.20780 1.16513 0.84549 0.82406 0.76333 1.90681 1.15405 1.83783 1.53564 1.48392 1.07202 1.06557 1.70767 1.23144 0.77877 1.01376 1.00494 1.21495 0.84135 0.92121 0.96994 0.91819 1.42402 0.99981 1.66630 1.26945 1.19639 0.86356 1.28226 1.03103 0.90772 1.25483 0.99794 1.01942 0.98869 1.69813 1.19907 1.47568 1.24376 0.85145 0.79664 0.77220 0.78177 1.19285 1.22253 1.21733 1.22954 0.92583 0.98221 1.02543 1.21678 0.96446 0.78452 0.99826 0.89595 1.22055 1.00029 1.02903 0.95910 1.74807 1.20176 1.04564 1.10296 1.81948 0.98230 1.03440 1.24705 1.50691 1.05200 1.09479 1.48601 1.22720 1.04144 0.73118 1.06631 0.87540 0.86787 0.88573 0.93743 0.90844 0.78998 0.93967 0.88440 0.90658 0.93535 0.92130 0.89273 0.87266 0.85071 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.38 71.24 0.67 -0.53 16 2 C 0.13 3.08 7.02 41.72 0.29 3.37 16 3 C -0.14 -4.41 6.84 40.81 0.28 -4.13 16 4 C 0.61 20.93 7.64 86.69 0.66 21.59 16 5 O -0.55 -18.53 13.77 -4.02 -0.06 -18.59 16 6 N -0.60 -20.78 3.07 -791.77 -2.43 -23.21 16 7 C 0.10 3.91 5.82 86.86 0.51 4.42 16 8 C 0.16 6.65 3.71 46.39 0.17 6.83 16 9 H 0.06 2.63 8.09 -2.39 -0.02 2.61 16 10 N -0.72 -36.61 5.24 -316.36 -1.66 -38.27 16 11 C -0.24 -13.57 9.96 84.03 0.84 -12.74 16 12 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 13 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 14 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 15 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 C -0.12 -4.00 6.12 31.78 0.19 -3.80 16 20 C 0.14 4.14 3.45 45.34 0.16 4.30 16 21 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 22 C -0.15 -3.98 9.11 71.98 0.66 -3.32 16 23 N -0.23 -8.38 9.39 -50.00 -0.47 -8.85 16 24 N -0.10 -3.36 13.78 37.02 0.51 -2.85 16 25 N -0.35 -7.60 4.03 -355.09 -1.43 -9.03 16 26 C 0.07 0.56 11.18 127.77 1.43 1.99 16 27 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.11 0.62 7.84 -2.39 -0.02 0.60 16 29 H 0.10 1.72 6.43 -2.39 -0.02 1.71 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 3.19 6.14 -2.38 -0.01 3.18 16 32 H 0.38 20.36 7.76 -92.71 -0.72 19.64 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 2.48 7.72 -2.39 -0.02 2.47 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.68 6.91 -2.39 -0.02 1.66 16 38 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.13 0.10 7.78 -2.39 -0.02 0.08 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.68 338.88 3.42 -72.26 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.33 Total: 24.14 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.32 Total: 14.47 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -5.20 Total: -141.29 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.68 3.42 -72.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988463823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.364 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds