Wall clock time and date at job start Tue Mar 31 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36596 * 126.58192 * 2 1 4 4 C 1.47530 * 125.76781 * 0.04565 * 3 2 1 5 5 O 1.21589 * 120.00147 * 359.71346 * 4 3 2 6 6 N 1.34775 * 120.00008 * 179.71689 * 4 3 2 7 7 C 1.47428 * 125.64386 * 0.05146 * 6 4 3 8 8 C 1.54911 * 104.83057 * 204.08258 * 7 6 4 9 9 H 1.09004 * 111.03576 * 81.08026 * 8 7 6 10 10 N 1.46499 * 111.00674 * 204.91667 * 8 7 6 11 11 C 1.36935 * 119.99938 * 267.19539 * 10 8 7 12 12 H 1.07999 * 120.00083 * 359.97438 * 11 10 8 13 13 C 1.38812 * 119.99632 * 180.02562 * 11 10 8 14 14 N 1.31617 * 120.00227 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99548 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99577 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00184 * 15 13 11 19 19 C 1.55164 * 101.58091 * 322.99510 * 8 7 6 20 20 C 1.47021 * 125.64912 * 180.02562 * 6 4 3 21 21 H 1.09001 * 110.00603 * 298.46720 * 20 6 4 22 22 C 1.52991 * 109.88419 * 59.56572 * 20 6 4 23 23 N 1.34394 * 108.46005 * 179.77872 * 3 2 1 24 24 N 1.28760 * 109.52269 * 0.23188 * 23 3 2 25 25 N 1.34808 * 126.57967 * 180.17396 * 2 1 3 26 26 C 1.46504 * 126.59495 * 359.97438 * 25 2 1 27 27 H 1.08988 * 109.47590 * 89.99644 * 1 2 3 28 28 H 1.09006 * 109.46798 * 210.00137 * 1 2 3 29 29 H 1.09005 * 109.46620 * 329.99335 * 1 2 3 30 30 H 1.08995 * 110.36971 * 85.25027 * 7 6 4 31 31 H 1.09000 * 110.36963 * 322.91715 * 7 6 4 32 32 H 0.96999 * 119.99984 * 87.20156 * 10 8 7 33 33 H 0.97000 * 120.00284 * 359.97438 * 14 13 11 34 34 H 1.09000 * 110.71909 * 153.86674 * 19 8 7 35 35 H 1.09003 * 110.71674 * 277.13372 * 19 8 7 36 36 H 1.08997 * 109.47378 * 177.80671 * 22 20 6 37 37 H 1.08995 * 109.47223 * 297.81147 * 22 20 6 38 38 H 1.08998 * 109.47207 * 57.80855 * 22 20 6 39 39 H 1.09001 * 109.47067 * 270.24207 * 26 25 2 40 40 H 1.08989 * 109.47072 * 30.24367 * 26 25 2 41 41 H 1.09007 * 109.46975 * 150.24439 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0010 5 8 0.6860 2.7628 -0.0034 6 7 2.7817 3.4988 0.0066 7 6 4.2458 3.3266 0.0112 8 6 4.7972 4.6365 0.6275 9 1 4.7382 4.6121 1.7156 10 7 6.1708 4.8879 0.1844 11 6 7.2251 4.4443 0.9372 12 1 7.0440 3.9094 1.8578 13 6 8.5265 4.6830 0.5176 14 7 8.7472 5.3353 -0.6041 15 14 9.9647 4.0771 1.5442 16 1 11.2392 4.4573 0.8836 17 1 9.9042 4.6938 2.8938 18 1 9.8942 2.5993 1.6716 19 6 3.8218 5.6913 0.0413 20 6 2.4760 4.9368 0.0087 21 1 1.9242 5.2021 -0.8931 22 6 1.6503 5.2915 1.2469 23 7 3.5983 0.6789 0.0049 24 7 3.6298 -0.6084 0.0031 25 7 2.3104 -1.0825 -0.0033 26 6 1.8863 -2.4849 -0.0070 27 1 -0.3634 0.0001 -1.0275 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 4.6162 3.2009 -1.0062 31 1 4.5254 2.4711 0.6260 32 1 6.3334 5.3687 -0.6422 33 1 8.0003 5.6489 -1.1378 34 1 3.7594 6.5629 0.6927 35 1 4.1263 5.9812 -0.9644 36 1 1.4607 6.3647 1.2621 37 1 0.7018 4.7553 1.2170 38 1 2.2002 5.0070 2.1440 39 1 1.7774 -2.8342 1.0197 40 1 0.9313 -2.5742 -0.5245 41 1 2.6350 -3.0895 -0.5190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988463826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:21 Heat of formation + Delta-G solvation = 82.265305 kcal Electronic energy + Delta-G solvation = -24002.610069 eV Core-core repulsion = 20534.462329 eV Total energy + Delta-G solvation = -3468.147740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.28350 -39.71182 -37.37762 -35.06045 -34.39036 -32.48323 -31.63170 -31.18438 -28.27791 -27.88938 -27.60787 -25.41194 -24.00276 -23.26683 -21.82794 -21.04353 -20.04149 -19.12367 -17.49016 -17.36318 -16.52802 -16.03686 -15.65231 -15.25093 -14.47466 -14.36011 -14.19051 -13.70883 -13.64171 -13.53855 -13.31105 -13.17941 -13.06973 -12.89589 -12.75898 -12.30923 -12.02801 -11.83699 -11.77638 -11.24710 -10.90937 -10.78571 -10.58851 -10.41536 -10.30479 -10.08642 -9.94633 -9.81898 -9.17678 -9.15206 -8.91967 -8.29123 -7.06060 -6.08694 -3.09886 1.05441 1.80027 1.93787 3.17437 3.41987 3.55594 3.59457 3.76225 4.12994 4.16896 4.46639 4.57929 4.65869 4.71610 4.90808 5.00049 5.15439 5.21545 5.22472 5.26461 5.48876 5.49489 5.59681 5.66874 5.68997 5.79952 5.88526 5.92923 6.06203 6.22287 6.27002 6.29688 6.33522 6.49916 6.64434 6.78485 6.89765 7.77270 7.84154 7.96338 8.35201 8.77058 9.21426 10.07951 10.21388 11.39404 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.004708 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.177547 B = 5946.286704 C = 7491.209787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.116 3.884 3 C -0.099 4.099 4 C 0.616 3.384 5 O -0.551 6.551 6 N -0.593 5.593 7 C 0.076 3.924 8 C 0.178 3.822 9 H 0.067 0.933 10 N -0.722 5.722 11 C -0.334 4.334 12 H 0.066 0.934 13 C -0.041 4.041 14 N -0.942 5.942 15 Si 1.079 2.921 16 H -0.285 1.285 17 H -0.295 1.295 18 H -0.294 1.294 19 C -0.140 4.140 20 C 0.140 3.860 21 H 0.072 0.928 22 C -0.161 4.161 23 N -0.187 5.187 24 N -0.069 5.069 25 N -0.369 5.369 26 C 0.089 3.911 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.370 0.630 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.366 -11.716 1.310 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C -0.238 4.238 4 C 0.403 3.597 5 O -0.430 6.430 6 N -0.324 5.324 7 C -0.050 4.050 8 C 0.065 3.935 9 H 0.085 0.915 10 N -0.363 5.363 11 C -0.465 4.465 12 H 0.084 0.916 13 C -0.238 4.238 14 N -0.587 5.587 15 Si 0.909 3.091 16 H -0.211 1.211 17 H -0.222 1.222 18 H -0.221 1.221 19 C -0.179 4.179 20 C 0.037 3.963 21 H 0.090 0.910 22 C -0.219 4.219 23 N -0.060 5.060 24 N -0.049 5.049 25 N -0.155 5.155 26 C -0.053 4.053 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.850 -12.240 1.613 20.889 hybrid contribution -2.514 0.022 -0.421 2.549 sum -19.364 -12.218 1.193 22.927 Atomic orbital electron populations 1.20673 0.84790 1.05213 1.04427 1.21852 0.96078 0.86411 0.97834 1.21187 0.89025 0.95312 1.18271 1.16331 0.84630 0.81984 0.76754 1.90695 1.15600 1.83491 1.53253 1.48371 1.08246 1.05515 1.70317 1.23654 0.76351 1.02641 1.02305 1.21257 0.84812 0.90319 0.97084 0.91471 1.42300 0.99626 1.67525 1.26849 1.20060 0.87534 1.33931 1.04964 0.91555 1.25758 0.98330 1.00003 0.99753 1.70886 1.33347 1.40082 1.14410 0.83263 0.75927 0.75503 0.74361 1.21057 1.22245 1.22130 1.23060 0.93693 0.98857 1.02311 1.21513 0.96575 0.79623 0.98576 0.91026 1.22136 1.00798 1.01371 0.97562 1.74855 1.18708 1.03516 1.08946 1.82095 0.95628 1.03914 1.23217 1.50330 1.06696 1.07598 1.50871 1.22119 1.02288 0.76353 1.04521 0.89253 0.90884 0.86997 0.91566 0.89170 0.79664 0.93369 0.90110 0.90794 0.91874 0.91349 0.92422 0.89427 0.88741 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.38 36.01 0.34 -0.44 16 2 C 0.12 1.45 7.02 -81.88 -0.57 0.87 16 3 C -0.10 -1.61 6.84 -83.55 -0.57 -2.18 16 4 C 0.62 10.56 7.63 -12.47 -0.10 10.46 16 5 O -0.55 -9.48 13.63 5.29 0.07 -9.40 16 6 N -0.59 -10.31 3.08 -164.24 -0.51 -10.82 16 7 C 0.08 1.49 5.82 -2.53 -0.01 1.48 16 8 C 0.18 3.61 3.71 -65.78 -0.24 3.36 16 9 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 10 N -0.72 -17.99 5.24 -51.35 -0.27 -18.25 16 11 C -0.33 -9.39 9.96 -15.06 -0.15 -9.54 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 13 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 14 N -0.94 -29.11 13.70 55.49 0.76 -28.35 16 15 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.14 -2.31 6.14 -24.89 -0.15 -2.47 16 20 C 0.14 2.18 3.49 -66.96 -0.23 1.95 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.16 -2.23 9.05 37.15 0.34 -1.90 16 23 N -0.19 -3.38 9.39 32.85 0.31 -3.07 16 24 N -0.07 -1.11 13.78 60.35 0.83 -0.28 16 25 N -0.37 -4.30 4.03 -63.59 -0.26 -4.56 16 26 C 0.09 0.49 11.18 59.85 0.67 1.16 16 27 H 0.09 0.65 8.14 -51.94 -0.42 0.23 16 28 H 0.07 0.38 7.84 -51.93 -0.41 -0.02 16 29 H 0.11 1.14 6.43 -51.93 -0.33 0.80 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.09 1.89 6.13 -51.93 -0.32 1.58 16 32 H 0.37 9.42 6.60 -40.82 -0.27 9.16 16 33 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 34 H 0.08 1.23 7.83 -51.93 -0.41 0.83 16 35 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.00 6.77 -51.93 -0.35 0.65 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.27 7.78 -51.94 -0.40 -0.13 16 41 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -34.86 336.87 -5.63 -40.48 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.77 Total: 6.60 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.79 Total: 1.49 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: 0.87 Total: -65.33 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.86 -5.63 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988463826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.748 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds