Wall clock time and date at job start Tue Mar 31 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30829 * 125.96102 * 2 1 4 4 C 1.33239 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52671 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47008 * 269.98080 * 5 4 3 7 7 O 1.21284 * 120.00319 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64919 * 359.68863 * 8 6 5 10 10 C 1.55132 * 104.72304 * 155.82011 * 9 8 6 11 11 H 1.08994 * 111.19082 * 279.19372 * 10 9 8 12 12 N 1.46494 * 110.93978 * 155.28983 * 10 9 8 13 13 C 1.36939 * 120.00081 * 92.95496 * 12 10 9 14 14 H 1.07995 * 119.99886 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99870 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99613 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47342 * 90.00156 * 17 15 13 19 19 H 1.48510 * 109.46805 * 210.00048 * 17 15 13 20 20 H 1.48505 * 109.47150 * 329.99471 * 17 15 13 21 21 C 1.55157 * 101.48308 * 37.29642 * 10 9 8 22 22 C 1.47025 * 125.64660 * 180.02562 * 8 6 5 23 23 H 1.08999 * 109.88371 * 61.44610 * 22 8 6 24 24 C 1.53002 * 109.87944 * 300.43351 * 22 8 6 25 25 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 26 26 N 1.34428 * 125.96139 * 179.97438 * 2 1 3 27 27 H 0.97003 * 126.82574 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47307 * 89.98151 * 1 2 3 29 29 H 1.09003 * 109.47186 * 209.97910 * 1 2 3 30 30 H 1.08998 * 109.47075 * 329.97660 * 1 2 3 31 31 H 1.09000 * 109.47262 * 29.98098 * 5 4 3 32 32 H 1.08999 * 109.47117 * 149.98436 * 5 4 3 33 33 H 1.09001 * 110.36689 * 274.74725 * 9 8 6 34 34 H 1.09000 * 110.36426 * 37.07524 * 9 8 6 35 35 H 0.97003 * 120.00112 * 272.96091 * 12 10 9 36 36 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.71995 * 205.96802 * 21 10 9 38 38 H 1.08999 * 110.87532 * 82.76881 * 21 10 9 39 39 H 1.08995 * 109.47104 * 61.46093 * 24 22 8 40 40 H 1.09008 * 109.46802 * 181.45642 * 24 22 8 41 41 H 1.09002 * 109.47470 * 301.45556 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1322 1.9351 -1.4193 7 8 4.5150 1.4457 -2.3416 8 7 6.1719 2.7567 -1.6649 9 6 7.0018 3.4212 -0.6437 10 6 8.3522 3.7014 -1.3541 11 1 8.9816 2.8117 -1.3688 12 7 9.0509 4.8253 -0.7260 13 6 9.9671 4.5942 0.2652 14 1 10.1748 3.5834 0.5835 15 6 10.6289 5.6593 0.8608 16 7 10.3753 6.8913 0.4731 17 14 11.8791 5.3439 2.2123 18 1 13.2250 5.1670 1.6102 19 1 11.9020 6.4995 3.1448 20 1 11.5042 4.1147 2.9565 21 6 7.8778 4.0708 -2.7845 22 6 6.6621 3.1440 -2.9959 23 1 5.8795 3.6732 -3.5396 24 6 7.0869 1.8987 -3.7766 25 7 3.6195 -0.6168 0.0015 26 7 2.2964 -1.0881 0.0005 27 1 2.0094 -2.0147 0.0006 28 1 -0.3634 0.0003 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4697 2.5471 0.5148 32 1 5.5739 1.1510 0.5157 33 1 6.5371 4.3545 -0.3257 34 1 7.1529 2.7613 0.2106 35 1 8.8646 5.7333 -1.0121 36 1 10.8380 7.6355 0.8891 37 1 8.6571 3.8579 -3.5162 38 1 7.5780 5.1175 -2.8361 39 1 6.2267 1.2429 -3.9107 40 1 7.4730 2.1955 -4.7519 41 1 7.8638 1.3706 -3.2237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988824330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:47 Heat of formation + Delta-G solvation = 60.733850 kcal Electronic energy + Delta-G solvation = -23276.366671 eV Core-core repulsion = 19807.285257 eV Total energy + Delta-G solvation = -3469.081414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26204 -39.87779 -37.39889 -34.19432 -33.78480 -32.50859 -31.91465 -31.30834 -29.60827 -28.31763 -27.77066 -25.41582 -23.93149 -22.57034 -21.47533 -20.70072 -19.95108 -18.69236 -17.97277 -17.36818 -16.96845 -15.77968 -15.65966 -15.17486 -14.82845 -14.44428 -14.04878 -13.88177 -13.38357 -13.31453 -13.13300 -13.03445 -12.91042 -12.77928 -12.47347 -12.22539 -11.97723 -11.78732 -11.66525 -11.18662 -10.97537 -10.75664 -10.63360 -10.26156 -10.25069 -10.12970 -10.00303 -9.79287 -9.72611 -9.43939 -9.02146 -8.32692 -7.10271 -5.86266 -3.17163 1.45547 2.45937 2.66428 2.85332 3.32054 3.39313 3.45242 3.46324 3.82495 4.39544 4.50441 4.58074 4.73985 5.00209 5.06945 5.14655 5.16933 5.30561 5.37088 5.45269 5.49683 5.54204 5.61160 5.65783 5.87197 5.88651 6.07863 6.13863 6.15897 6.23913 6.28923 6.32036 6.46881 6.55832 6.68292 6.86022 6.88921 7.62507 7.82229 7.98528 8.30998 8.39517 9.43319 9.97002 10.31832 11.35674 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.003345 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.074166 B = 8368.111999 C = 9224.948510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.530 5.530 4 C 0.257 3.743 5 C -0.047 4.047 6 C 0.538 3.462 7 O -0.544 6.544 8 N -0.608 5.608 9 C 0.069 3.931 10 C 0.175 3.825 11 H 0.069 0.931 12 N -0.712 5.712 13 C -0.249 4.249 14 H 0.073 0.927 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.138 4.138 22 C 0.140 3.860 23 H 0.069 0.931 24 C -0.161 4.161 25 N -0.305 5.305 26 N -0.484 5.484 27 H 0.438 0.562 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -13.171 -2.368 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.259 5.259 4 C -0.026 4.026 5 C -0.090 4.090 6 C 0.325 3.675 7 O -0.422 6.422 8 N -0.342 5.342 9 C -0.057 4.057 10 C 0.062 3.938 11 H 0.087 0.913 12 N -0.351 5.351 13 C -0.380 4.380 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.739 3.261 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.177 4.177 22 C 0.037 3.963 23 H 0.087 0.913 24 C -0.219 4.219 25 N -0.134 5.134 26 N -0.203 5.203 27 H 0.283 0.717 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.556 -13.522 -2.688 21.545 hybrid contribution 0.290 -0.414 0.760 0.913 sum -16.266 -13.936 -1.928 21.506 Atomic orbital electron populations 1.20377 0.83715 1.04859 1.04563 1.24355 0.96570 0.82840 0.96062 1.70301 1.01341 1.29517 1.24746 1.23304 0.92589 0.89666 0.97015 1.19898 0.93532 0.98870 0.96651 1.19716 0.79179 0.78365 0.90274 1.90673 1.53165 1.52185 1.46142 1.48552 1.30628 1.46206 1.08837 1.23617 0.93661 0.96955 0.91488 1.21313 0.90252 0.92810 0.89425 0.91342 1.42333 1.46248 1.03600 1.42944 1.19257 1.14625 0.92967 1.11141 0.90917 1.24772 1.00340 0.95217 1.00158 1.69657 1.45373 0.97661 1.44955 0.86187 0.81396 0.77042 0.81511 1.21626 1.21720 1.20614 1.23029 0.96046 0.99162 0.99459 1.21485 0.95895 0.95320 0.83601 0.91274 1.22131 1.01939 0.98178 0.99622 1.77991 0.96527 1.12297 1.26545 1.47923 1.04331 1.09900 1.58103 0.71657 0.89024 0.89984 0.88326 0.85986 0.86429 0.90947 0.91121 0.77830 0.93317 0.90187 0.90563 0.91603 0.92025 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.28 3.06 8.24 -155.70 -1.28 1.78 16 3 N -0.53 -7.82 11.19 -8.16 -0.09 -7.91 16 4 C 0.26 3.97 6.63 -156.85 -1.04 2.92 16 5 C -0.05 -0.67 5.33 -29.04 -0.15 -0.82 16 6 C 0.54 8.96 7.62 -10.98 -0.08 8.88 16 7 O -0.54 -10.67 14.93 5.55 0.08 -10.59 16 8 N -0.61 -9.68 3.08 -162.87 -0.50 -10.18 16 9 C 0.07 1.13 6.40 -2.41 -0.02 1.11 16 10 C 0.17 3.20 3.73 -65.66 -0.24 2.95 16 11 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 12 N -0.71 -16.50 5.24 -51.24 -0.27 -16.77 16 13 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 17 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.14 -2.16 6.13 -24.90 -0.15 -2.31 16 22 C 0.14 2.14 3.49 -66.95 -0.23 1.90 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 24 C -0.16 -2.30 9.06 37.16 0.34 -1.96 16 25 N -0.30 -4.53 12.80 32.42 0.41 -4.12 16 26 N -0.48 -5.19 7.45 32.62 0.24 -4.95 16 27 H 0.44 2.84 8.96 -182.33 -1.63 1.21 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.12 1.46 7.85 -51.93 -0.41 1.05 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 35 H 0.39 9.59 7.77 -40.82 -0.32 9.27 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 38 H 0.08 1.20 8.01 -51.93 -0.42 0.79 16 39 H 0.06 1.05 6.74 -51.93 -0.35 0.70 16 40 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -34.50 345.22 -9.22 -43.72 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.27 Total: 7.78 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -2.74 Total: 7.47 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: 0.52 Total: -70.06 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.50 -9.22 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.454 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds