Wall clock time and date at job start Tue Mar 31 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30829 * 125.96102 * 2 1 4 4 C 1.33239 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52671 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47008 * 269.98080 * 5 4 3 7 7 O 1.21284 * 120.00319 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64919 * 359.68863 * 8 6 5 10 10 C 1.55132 * 104.72304 * 155.82011 * 9 8 6 11 11 H 1.08994 * 111.19082 * 279.19372 * 10 9 8 12 12 N 1.46494 * 110.93978 * 155.28983 * 10 9 8 13 13 C 1.36939 * 120.00081 * 92.95496 * 12 10 9 14 14 H 1.07995 * 119.99886 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99870 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00095 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99613 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47342 * 90.00156 * 17 15 13 19 19 H 1.48510 * 109.46805 * 210.00048 * 17 15 13 20 20 H 1.48505 * 109.47150 * 329.99471 * 17 15 13 21 21 C 1.55157 * 101.48308 * 37.29642 * 10 9 8 22 22 C 1.47025 * 125.64660 * 180.02562 * 8 6 5 23 23 H 1.08999 * 109.88371 * 61.44610 * 22 8 6 24 24 C 1.53002 * 109.87944 * 300.43351 * 22 8 6 25 25 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 26 26 N 1.34428 * 125.96139 * 179.97438 * 2 1 3 27 27 H 0.97003 * 126.82574 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47307 * 89.98151 * 1 2 3 29 29 H 1.09003 * 109.47186 * 209.97910 * 1 2 3 30 30 H 1.08998 * 109.47075 * 329.97660 * 1 2 3 31 31 H 1.09000 * 109.47262 * 29.98098 * 5 4 3 32 32 H 1.08999 * 109.47117 * 149.98436 * 5 4 3 33 33 H 1.09001 * 110.36689 * 274.74725 * 9 8 6 34 34 H 1.09000 * 110.36426 * 37.07524 * 9 8 6 35 35 H 0.97003 * 120.00112 * 272.96091 * 12 10 9 36 36 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.71995 * 205.96802 * 21 10 9 38 38 H 1.08999 * 110.87532 * 82.76881 * 21 10 9 39 39 H 1.08995 * 109.47104 * 61.46093 * 24 22 8 40 40 H 1.09008 * 109.46802 * 181.45642 * 24 22 8 41 41 H 1.09002 * 109.47470 * 301.45556 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1322 1.9351 -1.4193 7 8 4.5150 1.4457 -2.3416 8 7 6.1719 2.7567 -1.6649 9 6 7.0018 3.4212 -0.6437 10 6 8.3522 3.7014 -1.3541 11 1 8.9816 2.8117 -1.3688 12 7 9.0509 4.8253 -0.7260 13 6 9.9671 4.5942 0.2652 14 1 10.1748 3.5834 0.5835 15 6 10.6289 5.6593 0.8608 16 7 10.3753 6.8913 0.4731 17 14 11.8791 5.3439 2.2123 18 1 13.2250 5.1670 1.6102 19 1 11.9020 6.4995 3.1448 20 1 11.5042 4.1147 2.9565 21 6 7.8778 4.0708 -2.7845 22 6 6.6621 3.1440 -2.9959 23 1 5.8795 3.6732 -3.5396 24 6 7.0869 1.8987 -3.7766 25 7 3.6195 -0.6168 0.0015 26 7 2.2964 -1.0881 0.0005 27 1 2.0094 -2.0147 0.0006 28 1 -0.3634 0.0003 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4697 2.5471 0.5148 32 1 5.5739 1.1510 0.5157 33 1 6.5371 4.3545 -0.3257 34 1 7.1529 2.7613 0.2106 35 1 8.8646 5.7333 -1.0121 36 1 10.8380 7.6355 0.8891 37 1 8.6571 3.8579 -3.5162 38 1 7.5780 5.1175 -2.8361 39 1 6.2267 1.2429 -3.9107 40 1 7.4730 2.1955 -4.7519 41 1 7.8638 1.3706 -3.2237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988824330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:47 Heat of formation + Delta-G solvation = 36.672202 kcal Electronic energy + Delta-G solvation = -23277.410062 eV Core-core repulsion = 19807.285257 eV Total energy + Delta-G solvation = -3470.124805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.20495 -41.20551 -38.80122 -35.95645 -34.77489 -33.38722 -33.31176 -32.92603 -30.59645 -29.91673 -28.61592 -26.70966 -25.78174 -23.85018 -22.47806 -21.89430 -21.22770 -19.95555 -19.27133 -18.88507 -18.25622 -17.05616 -16.90300 -16.37450 -16.32723 -15.77192 -15.24529 -15.19788 -14.71142 -14.68857 -14.31192 -14.25459 -13.87125 -13.68868 -13.60260 -13.41192 -13.10888 -12.98421 -12.94605 -12.76578 -12.74211 -12.27636 -12.10994 -12.01222 -11.68263 -11.42751 -11.29030 -11.13289 -11.01818 -10.83986 -10.47955 -9.68360 -9.01698 -7.91474 -5.21034 0.53279 1.53100 1.53448 1.55598 1.56932 1.61894 1.72593 2.12650 2.60047 2.97105 3.40216 3.42056 3.51089 3.82302 3.88848 3.92705 4.00806 4.13698 4.31187 4.36935 4.39213 4.49998 4.54010 4.69414 4.72625 4.73654 4.81524 4.94416 5.03179 5.04976 5.16937 5.21523 5.27174 5.28117 5.36828 5.48306 5.58811 6.20217 6.29671 6.50393 7.04264 7.08776 7.37651 8.09148 8.33182 9.31405 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.003345 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.074166 B = 8368.111999 C = 9224.948510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.286 3.714 3 N -0.570 5.570 4 C 0.240 3.760 5 C -0.045 4.045 6 C 0.538 3.462 7 O -0.575 6.575 8 N -0.605 5.605 9 C 0.081 3.919 10 C 0.168 3.832 11 H 0.068 0.932 12 N -0.722 5.722 13 C -0.241 4.241 14 H 0.081 0.919 15 C -0.070 4.070 16 N -0.967 5.967 17 Si 0.968 3.032 18 H -0.290 1.290 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.125 4.125 22 C 0.139 3.861 23 H 0.070 0.930 24 C -0.152 4.152 25 N -0.336 5.336 26 N -0.474 5.474 27 H 0.456 0.544 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 -14.736 -2.145 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.300 5.300 4 C -0.044 4.044 5 C -0.086 4.086 6 C 0.326 3.674 7 O -0.455 6.455 8 N -0.339 5.339 9 C -0.044 4.044 10 C 0.058 3.942 11 H 0.086 0.914 12 N -0.361 5.361 13 C -0.372 4.372 14 H 0.099 0.901 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.797 3.203 18 H -0.217 1.217 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.164 4.164 22 C 0.036 3.964 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.166 5.166 26 N -0.194 5.194 27 H 0.304 0.696 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.603 -15.165 -2.473 23.366 hybrid contribution 0.485 -0.027 0.619 0.787 sum -17.118 -15.192 -1.854 22.962 Atomic orbital electron populations 1.20654 0.79839 1.06794 1.05904 1.25286 0.98364 0.81908 0.93580 1.70286 1.01556 1.31528 1.26650 1.23469 0.93208 0.90008 0.97684 1.19930 0.94075 0.99589 0.95049 1.20110 0.78644 0.77669 0.90995 1.90652 1.54144 1.53362 1.47362 1.48551 1.30459 1.45919 1.08950 1.23322 0.92437 0.97062 0.91610 1.21459 0.90569 0.91335 0.90873 0.91393 1.42443 1.46484 1.04330 1.42856 1.19635 1.13874 0.93084 1.10653 0.90129 1.25497 1.02760 0.95200 1.02793 1.69801 1.46971 0.98318 1.46599 0.85225 0.79119 0.76883 0.79026 1.21749 1.22618 1.19221 1.22923 0.96400 0.99147 0.97946 1.21551 0.95635 0.95711 0.83537 0.91175 1.22053 1.01093 0.97215 1.00628 1.77861 0.98947 1.12324 1.27485 1.47846 1.03129 1.11007 1.57419 0.69552 0.87734 0.86469 0.87962 0.84796 0.84959 0.91562 0.89991 0.79013 0.94049 0.88908 0.90742 0.93372 0.89785 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.29 5.80 8.24 138.23 1.14 6.94 16 3 N -0.57 -16.44 11.19 -179.73 -2.01 -18.45 16 4 C 0.24 7.28 6.63 138.63 0.92 8.20 16 5 C -0.04 -1.24 5.33 29.10 0.16 -1.08 16 6 C 0.54 17.63 7.62 87.66 0.67 18.30 16 7 O -0.58 -22.52 14.93 -3.04 -0.05 -22.56 16 8 N -0.61 -18.69 3.08 -787.59 -2.42 -21.11 16 9 C 0.08 2.58 6.40 86.93 0.56 3.14 16 10 C 0.17 5.98 3.73 46.46 0.17 6.15 16 11 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 12 N -0.72 -33.16 5.24 -316.02 -1.66 -34.82 16 13 C -0.24 -12.35 9.96 84.03 0.84 -11.51 16 14 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 16 N -0.97 -56.53 13.06 21.65 0.28 -56.25 16 17 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.13 -3.76 6.13 31.78 0.19 -3.56 16 22 C 0.14 4.06 3.49 45.34 0.16 4.22 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 C -0.15 -4.13 9.06 71.98 0.65 -3.48 16 25 N -0.34 -9.80 12.80 -51.34 -0.66 -10.46 16 26 N -0.47 -9.48 7.45 -50.71 -0.38 -9.86 16 27 H 0.46 5.05 8.96 -213.09 -1.91 3.14 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.13 3.17 7.85 -2.39 -0.02 3.15 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.43 7.48 -2.39 -0.02 2.41 16 35 H 0.38 18.77 7.77 -92.71 -0.72 18.05 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.09 2.55 7.83 -2.39 -0.02 2.53 16 38 H 0.07 2.28 8.01 -2.39 -0.02 2.26 16 39 H 0.05 1.50 6.74 -2.39 -0.02 1.48 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -74.49 345.22 0.24 -74.25 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -1.57 Total: 29.01 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.67 Total: 24.13 kcal Atomic # 7 Polarization: -144.11 SS G_CDS: -6.84 Total: -150.95 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.49 0.24 -74.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.924 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds