Wall clock time and date at job start Tue Mar 31 2020 03:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30826 * 125.95965 * 2 1 4 4 C 1.33249 * 109.82858 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52576 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46973 * 89.99965 * 5 4 3 7 7 O 1.21275 * 120.00021 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99836 * 179.97438 * 6 5 4 9 9 C 1.47418 * 125.64845 * 0.04868 * 8 6 5 10 10 C 1.54906 * 104.83216 * 204.08908 * 9 8 6 11 11 H 1.09001 * 111.00646 * 81.09923 * 10 9 8 12 12 N 1.46501 * 111.00615 * 204.91505 * 10 9 8 13 13 C 1.36934 * 119.99928 * 273.54597 * 12 10 9 14 14 H 1.08002 * 120.00041 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99967 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86811 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46900 * 60.00049 * 17 15 13 19 19 H 1.48493 * 109.47224 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46886 * 300.00053 * 17 15 13 21 21 C 1.55155 * 101.58328 * 322.99015 * 10 9 8 22 22 C 1.47019 * 125.64589 * 179.97438 * 8 6 5 23 23 H 1.09008 * 109.87958 * 59.41260 * 22 8 6 24 24 C 1.52997 * 109.88752 * 298.39914 * 22 8 6 25 25 N 1.30714 * 108.94474 * 0.26333 * 4 3 2 26 26 N 1.34427 * 125.95895 * 179.97438 * 2 1 3 27 27 H 0.96996 * 126.82641 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47256 * 90.02671 * 1 2 3 29 29 H 1.09002 * 109.47461 * 210.02195 * 1 2 3 30 30 H 1.09001 * 109.47122 * 330.02467 * 1 2 3 31 31 H 1.09001 * 109.47184 * 330.00148 * 5 4 3 32 32 H 1.09000 * 109.46668 * 210.00037 * 5 4 3 33 33 H 1.09001 * 110.36828 * 322.92610 * 9 8 6 34 34 H 1.08995 * 110.37150 * 85.13974 * 9 8 6 35 35 H 0.96999 * 120.00003 * 93.54741 * 12 10 9 36 36 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 37 37 H 1.09007 * 110.71881 * 277.14057 * 21 10 9 38 38 H 1.09000 * 110.72534 * 153.86738 * 21 10 9 39 39 H 1.09002 * 109.47153 * 61.45267 * 24 22 8 40 40 H 1.09001 * 109.46832 * 301.45458 * 24 22 8 41 41 H 1.09004 * 109.47261 * 181.45439 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1305 1.9350 1.4224 7 8 4.5122 1.4456 2.3437 8 7 6.1700 2.7566 1.6693 9 6 7.0044 3.4169 0.6490 10 6 8.3504 3.7014 1.3610 11 1 8.9802 2.8119 1.3759 12 7 9.0491 4.8258 0.7334 13 6 9.8678 4.6085 -0.3425 14 1 9.9988 3.6082 -0.7281 15 6 10.5295 5.6739 -0.9375 16 7 10.3703 6.8929 -0.4672 17 14 11.6470 5.3774 -2.4049 18 1 10.8602 4.7796 -3.5133 19 1 12.2296 6.6680 -2.8521 20 1 12.7388 4.4491 -2.0159 21 6 7.8745 4.0707 2.7909 22 6 6.6585 3.1439 3.0008 23 1 6.9580 2.2564 3.5583 24 6 5.5604 3.8900 3.7613 25 7 3.6194 -0.6168 -0.0048 26 7 2.2964 -1.0881 0.0005 27 1 2.0093 -2.0146 0.0006 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.4703 2.5472 -0.5125 32 1 5.5745 1.1510 -0.5122 33 1 7.1583 2.7539 -0.2023 34 1 6.5407 4.3484 0.3245 35 1 8.9318 5.7241 1.0800 36 1 10.8324 7.6374 -0.8833 37 1 7.5740 5.1174 2.8390 38 1 8.6530 3.8578 3.5235 39 1 4.7003 3.2337 3.8943 40 1 5.2606 4.7715 3.1945 41 1 5.9380 4.1964 4.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988824331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:51 Heat of formation + Delta-G solvation = 60.647584 kcal Electronic energy + Delta-G solvation = -23273.845816 eV Core-core repulsion = 19804.760661 eV Total energy + Delta-G solvation = -3469.085155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.25911 -39.86255 -37.38858 -34.20558 -33.78105 -32.50575 -31.88745 -31.36522 -29.60541 -28.38501 -27.76853 -25.40045 -23.92354 -22.50119 -21.42690 -20.54117 -20.18184 -18.62194 -17.97038 -17.36815 -16.88389 -16.09948 -15.61517 -15.01379 -14.87468 -14.48819 -14.01206 -13.73756 -13.62503 -13.30664 -13.23046 -12.98333 -12.81095 -12.67381 -12.50223 -12.17029 -12.00351 -11.84293 -11.64020 -11.12415 -10.99343 -10.75169 -10.62402 -10.32699 -10.25939 -10.12718 -10.01767 -9.78222 -9.72560 -9.43517 -9.01694 -8.31694 -7.09883 -5.85606 -3.16614 1.45702 2.46329 2.66466 2.85688 3.32461 3.40147 3.45389 3.45766 3.82854 4.39953 4.50593 4.58356 4.74468 5.00756 5.05593 5.12671 5.18379 5.27520 5.37619 5.45897 5.51020 5.54405 5.60008 5.72633 5.80512 5.86292 6.09263 6.14309 6.15280 6.20711 6.29227 6.38359 6.48404 6.49561 6.69921 6.86226 6.89194 7.62469 7.82529 7.98746 8.31653 8.39758 9.43943 9.97639 10.32568 11.36284 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003411 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.493981 B = 8205.937196 C = 9194.633428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.530 5.530 4 C 0.258 3.742 5 C -0.047 4.047 6 C 0.538 3.462 7 O -0.544 6.544 8 N -0.608 5.608 9 C 0.070 3.930 10 C 0.172 3.828 11 H 0.065 0.935 12 N -0.712 5.712 13 C -0.249 4.249 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.135 4.135 22 C 0.140 3.860 23 H 0.071 0.929 24 C -0.160 4.160 25 N -0.305 5.305 26 N -0.484 5.484 27 H 0.438 0.562 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 -12.527 2.498 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.259 5.259 4 C -0.026 4.026 5 C -0.090 4.090 6 C 0.325 3.675 7 O -0.422 6.422 8 N -0.342 5.342 9 C -0.056 4.056 10 C 0.060 3.940 11 H 0.083 0.917 12 N -0.352 5.352 13 C -0.380 4.380 14 H 0.090 0.910 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.739 3.261 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.174 4.174 22 C 0.037 3.963 23 H 0.089 0.911 24 C -0.218 4.218 25 N -0.134 5.134 26 N -0.203 5.203 27 H 0.283 0.717 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.906 -12.872 2.812 21.433 hybrid contribution 0.241 -0.430 -0.833 0.968 sum -16.665 -13.302 1.979 21.414 Atomic orbital electron populations 1.20374 0.83720 1.05003 1.04412 1.24353 0.96569 0.82842 0.96070 1.70305 1.01336 1.29511 1.24734 1.23307 0.92593 0.89663 0.96997 1.19899 0.93537 0.98871 0.96652 1.19711 0.79280 0.78264 0.90268 1.90673 1.52960 1.52314 1.46237 1.48564 1.30713 1.46117 1.08847 1.23552 0.93491 0.97050 0.91458 1.21282 0.90309 0.92831 0.89558 0.91730 1.42312 1.52466 1.04740 1.35709 1.19199 1.19449 0.93665 1.05716 0.90972 1.24767 1.00616 0.95322 0.99734 1.69647 1.46626 0.98414 1.42998 0.86263 0.80610 0.76740 0.82517 1.21107 1.21668 1.21164 1.22997 0.95852 0.99592 0.98973 1.21497 0.93913 0.97229 0.83679 0.91093 1.22125 0.99341 1.00536 0.99835 1.77992 0.96531 1.12300 1.26563 1.47922 1.04330 1.09900 1.58104 0.71659 0.89047 0.89971 0.88332 0.85987 0.86424 0.91145 0.90945 0.77811 0.93271 0.90286 0.90315 0.91685 0.92457 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.04 16 2 C 0.28 3.07 8.24 -155.70 -1.28 1.78 16 3 N -0.53 -7.83 11.19 -8.16 -0.09 -7.92 16 4 C 0.26 3.98 6.63 -156.85 -1.04 2.94 16 5 C -0.05 -0.67 5.33 -29.04 -0.15 -0.83 16 6 C 0.54 8.99 7.63 -10.98 -0.08 8.90 16 7 O -0.54 -10.70 15.07 5.56 0.08 -10.61 16 8 N -0.61 -9.70 3.06 -163.02 -0.50 -10.20 16 9 C 0.07 1.16 6.38 -2.53 -0.02 1.15 16 10 C 0.17 3.17 3.69 -65.78 -0.24 2.93 16 11 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 12 N -0.71 -16.53 5.28 -51.35 -0.27 -16.80 16 13 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 17 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.14 -2.11 6.10 -24.90 -0.15 -2.26 16 22 C 0.14 2.13 3.46 -66.95 -0.23 1.90 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 24 C -0.16 -2.29 9.10 37.16 0.34 -1.95 16 25 N -0.31 -4.55 12.80 32.42 0.41 -4.14 16 26 N -0.48 -5.21 7.45 32.62 0.24 -4.97 16 27 H 0.44 2.86 8.96 -182.33 -1.63 1.22 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.12 1.47 7.85 -51.93 -0.41 1.06 16 33 H 0.07 1.10 7.48 -51.93 -0.39 0.72 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.39 9.60 7.71 -40.82 -0.31 9.28 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 1.25 7.70 -51.92 -0.40 0.85 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.03 6.88 -51.93 -0.36 0.68 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -34.50 345.48 -9.22 -43.72 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.27 Total: 7.82 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -2.73 Total: 7.58 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: 0.52 Total: -70.18 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.50 -9.22 -43.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.369 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds