Wall clock time and date at job start Tue Mar 31 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30826 * 125.95965 * 2 1 4 4 C 1.33249 * 109.82858 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.52576 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46973 * 89.99965 * 5 4 3 7 7 O 1.21275 * 120.00021 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99836 * 179.97438 * 6 5 4 9 9 C 1.47418 * 125.64845 * 0.04868 * 8 6 5 10 10 C 1.54906 * 104.83216 * 204.08908 * 9 8 6 11 11 H 1.09001 * 111.00646 * 81.09923 * 10 9 8 12 12 N 1.46501 * 111.00615 * 204.91505 * 10 9 8 13 13 C 1.36934 * 119.99928 * 273.54597 * 12 10 9 14 14 H 1.08002 * 120.00041 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99967 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86811 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46900 * 60.00049 * 17 15 13 19 19 H 1.48493 * 109.47224 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46886 * 300.00053 * 17 15 13 21 21 C 1.55155 * 101.58328 * 322.99015 * 10 9 8 22 22 C 1.47019 * 125.64589 * 179.97438 * 8 6 5 23 23 H 1.09008 * 109.87958 * 59.41260 * 22 8 6 24 24 C 1.52997 * 109.88752 * 298.39914 * 22 8 6 25 25 N 1.30714 * 108.94474 * 0.26333 * 4 3 2 26 26 N 1.34427 * 125.95895 * 179.97438 * 2 1 3 27 27 H 0.96996 * 126.82641 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47256 * 90.02671 * 1 2 3 29 29 H 1.09002 * 109.47461 * 210.02195 * 1 2 3 30 30 H 1.09001 * 109.47122 * 330.02467 * 1 2 3 31 31 H 1.09001 * 109.47184 * 330.00148 * 5 4 3 32 32 H 1.09000 * 109.46668 * 210.00037 * 5 4 3 33 33 H 1.09001 * 110.36828 * 322.92610 * 9 8 6 34 34 H 1.08995 * 110.37150 * 85.13974 * 9 8 6 35 35 H 0.96999 * 120.00003 * 93.54741 * 12 10 9 36 36 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 37 37 H 1.09007 * 110.71881 * 277.14057 * 21 10 9 38 38 H 1.09000 * 110.72534 * 153.86738 * 21 10 9 39 39 H 1.09002 * 109.47153 * 61.45267 * 24 22 8 40 40 H 1.09001 * 109.46832 * 301.45458 * 24 22 8 41 41 H 1.09004 * 109.47261 * 181.45439 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1305 1.9350 1.4224 7 8 4.5122 1.4456 2.3437 8 7 6.1700 2.7566 1.6693 9 6 7.0044 3.4169 0.6490 10 6 8.3504 3.7014 1.3610 11 1 8.9802 2.8119 1.3759 12 7 9.0491 4.8258 0.7334 13 6 9.8678 4.6085 -0.3425 14 1 9.9988 3.6082 -0.7281 15 6 10.5295 5.6739 -0.9375 16 7 10.3703 6.8929 -0.4672 17 14 11.6470 5.3774 -2.4049 18 1 10.8602 4.7796 -3.5133 19 1 12.2296 6.6680 -2.8521 20 1 12.7388 4.4491 -2.0159 21 6 7.8745 4.0707 2.7909 22 6 6.6585 3.1439 3.0008 23 1 6.9580 2.2564 3.5583 24 6 5.5604 3.8900 3.7613 25 7 3.6194 -0.6168 -0.0048 26 7 2.2964 -1.0881 0.0005 27 1 2.0093 -2.0146 0.0006 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.4703 2.5472 -0.5125 32 1 5.5745 1.1510 -0.5122 33 1 7.1583 2.7539 -0.2023 34 1 6.5407 4.3484 0.3245 35 1 8.9318 5.7241 1.0800 36 1 10.8324 7.6374 -0.8833 37 1 7.5740 5.1174 2.8390 38 1 8.6530 3.8578 3.5235 39 1 4.7003 3.2337 3.8943 40 1 5.2606 4.7715 3.1945 41 1 5.9380 4.1964 4.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988824331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:50 Heat of formation + Delta-G solvation = 36.574542 kcal Electronic energy + Delta-G solvation = -23274.889701 eV Core-core repulsion = 19804.760661 eV Total energy + Delta-G solvation = -3470.129040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.20530 -41.19251 -38.79382 -35.96239 -34.77475 -33.38702 -33.30221 -32.96038 -30.60708 -29.98462 -28.61673 -26.70143 -25.78943 -23.74014 -22.39335 -21.85496 -21.41915 -19.90172 -19.18633 -18.88887 -18.22315 -17.43677 -16.79888 -16.38198 -16.18536 -15.75430 -15.32429 -15.21770 -14.95195 -14.45384 -14.32797 -14.18914 -13.82874 -13.65993 -13.62019 -13.42394 -13.20934 -12.97661 -12.80782 -12.77845 -12.74022 -12.32505 -12.10486 -12.00658 -11.69503 -11.48269 -11.28530 -11.13428 -10.99592 -10.85114 -10.47983 -9.67587 -9.01724 -7.90955 -5.20621 0.53173 1.53481 1.54674 1.55201 1.57563 1.60897 1.72071 2.12813 2.60322 2.96993 3.40717 3.41924 3.50967 3.80211 3.86241 3.93239 4.00641 4.18417 4.30061 4.36603 4.36840 4.49106 4.53920 4.70147 4.72776 4.74971 4.80696 4.89173 5.03520 5.09278 5.14887 5.21364 5.24251 5.29379 5.41751 5.44122 5.58951 6.20193 6.30013 6.50261 7.04184 7.08630 7.38119 8.09621 8.33806 9.31726 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003411 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.493981 B = 8205.937196 C = 9194.633428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.286 3.714 3 N -0.570 5.570 4 C 0.240 3.760 5 C -0.045 4.045 6 C 0.538 3.462 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.083 3.917 10 C 0.165 3.835 11 H 0.064 0.936 12 N -0.722 5.722 13 C -0.242 4.242 14 H 0.081 0.919 15 C -0.069 4.069 16 N -0.967 5.967 17 Si 0.968 3.032 18 H -0.277 1.277 19 H -0.300 1.300 20 H -0.280 1.280 21 C -0.123 4.123 22 C 0.138 3.862 23 H 0.074 0.926 24 C -0.152 4.152 25 N -0.337 5.337 26 N -0.474 5.474 27 H 0.456 0.544 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 -13.993 2.251 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.300 5.300 4 C -0.044 4.044 5 C -0.087 4.087 6 C 0.326 3.674 7 O -0.455 6.455 8 N -0.339 5.339 9 C -0.042 4.042 10 C 0.055 3.945 11 H 0.082 0.918 12 N -0.362 5.362 13 C -0.374 4.374 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.617 5.617 17 Si 0.797 3.203 18 H -0.203 1.203 19 H -0.226 1.226 20 H -0.206 1.206 21 C -0.161 4.161 22 C 0.035 3.965 23 H 0.092 0.908 24 C -0.210 4.210 25 N -0.167 5.167 26 N -0.194 5.194 27 H 0.304 0.696 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.052 -14.413 2.573 23.243 hybrid contribution 0.475 -0.082 -0.688 0.840 sum -17.577 -14.495 1.885 22.861 Atomic orbital electron populations 1.20654 0.79836 1.06442 1.06253 1.25287 0.98366 0.81907 0.93569 1.70290 1.01541 1.31520 1.26648 1.23468 0.93213 0.90001 0.97668 1.19930 0.94093 0.99568 0.95070 1.20099 0.78749 0.77576 0.90979 1.90652 1.53943 1.53493 1.47450 1.48564 1.30510 1.45831 1.08988 1.23248 0.92307 0.97080 0.91590 1.21435 0.90585 0.91369 0.91128 0.91780 1.42422 1.52808 1.05481 1.35466 1.19588 1.18395 0.93771 1.05613 0.90143 1.25494 1.02783 0.95308 1.02610 1.69795 1.48252 0.99061 1.44579 0.85298 0.79011 0.76086 0.79863 1.20258 1.22647 1.20595 1.22902 0.96219 0.99548 0.97437 1.21577 0.93998 0.97335 0.83565 0.90792 1.22041 0.98334 0.99735 1.00849 1.77861 0.98958 1.12323 1.27519 1.47843 1.03120 1.11006 1.57436 0.69554 0.86807 0.86874 0.88476 0.84858 0.84950 0.90049 0.91713 0.78984 0.94046 0.90430 0.88914 0.93400 0.92807 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.29 5.82 8.24 138.23 1.14 6.96 16 3 N -0.57 -16.48 11.19 -179.73 -2.01 -18.49 16 4 C 0.24 7.32 6.63 138.63 0.92 8.24 16 5 C -0.04 -1.25 5.33 29.10 0.16 -1.09 16 6 C 0.54 17.70 7.63 87.66 0.67 18.37 16 7 O -0.58 -22.58 15.07 -3.01 -0.05 -22.63 16 8 N -0.61 -18.75 3.06 -788.08 -2.42 -21.17 16 9 C 0.08 2.67 6.38 86.86 0.55 3.22 16 10 C 0.17 5.89 3.69 46.38 0.17 6.06 16 11 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 12 N -0.72 -33.23 5.28 -316.38 -1.67 -34.90 16 13 C -0.24 -12.43 9.98 84.03 0.84 -11.59 16 14 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 15 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 16 N -0.97 -56.54 13.06 21.65 0.28 -56.25 16 17 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.12 -3.64 6.10 31.78 0.19 -3.45 16 22 C 0.14 4.03 3.46 45.34 0.16 4.19 16 23 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 24 C -0.15 -4.15 9.10 71.98 0.66 -3.50 16 25 N -0.34 -9.85 12.80 -51.33 -0.66 -10.51 16 26 N -0.47 -9.52 7.45 -50.71 -0.38 -9.90 16 27 H 0.46 5.09 8.96 -213.10 -1.91 3.18 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.13 3.19 7.85 -2.39 -0.02 3.17 16 33 H 0.08 2.43 7.48 -2.39 -0.02 2.41 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.38 18.78 7.71 -92.71 -0.71 18.07 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.08 2.36 7.70 -2.38 -0.02 2.34 16 38 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 1.49 6.88 -2.39 -0.02 1.47 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -74.52 345.48 0.24 -74.28 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -1.56 Total: 29.19 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.67 Total: 24.26 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -6.85 Total: -151.22 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.52 0.24 -74.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.858 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds