Wall clock time and date at job start Tue Mar 31 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.96348 * 2 1 4 4 C 1.33236 * 109.83096 * 180.12869 * 3 2 1 5 5 C 1.50702 * 125.52697 * 179.85737 * 4 3 2 6 6 C 1.50695 * 109.46956 * 269.71356 * 5 4 3 7 7 O 1.21278 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99833 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.65061 * 359.97311 * 8 6 5 10 10 C 1.54322 * 107.27223 * 181.07843 * 9 8 6 11 11 H 1.08995 * 110.72403 * 263.65428 * 10 9 8 12 12 N 1.46498 * 110.71797 * 140.55842 * 10 9 8 13 13 C 1.36938 * 119.99944 * 86.45732 * 12 10 9 14 14 H 1.07999 * 120.00452 * 359.97438 * 13 12 10 15 15 C 1.38810 * 119.99967 * 179.97438 * 13 12 10 16 16 N 1.31622 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00305 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47025 * 89.99877 * 17 15 13 19 19 H 1.48495 * 109.47468 * 210.00233 * 17 15 13 20 20 H 1.48501 * 109.46608 * 329.99991 * 17 15 13 21 21 C 1.55154 * 102.94204 * 22.19795 * 10 9 8 22 22 C 1.47426 * 125.64729 * 180.02562 * 8 6 5 23 23 H 1.08998 * 110.36718 * 274.68923 * 22 8 6 24 24 C 1.53005 * 110.36760 * 37.01198 * 22 8 6 25 25 N 1.30712 * 108.94686 * 359.58793 * 4 3 2 26 26 N 1.34431 * 125.96206 * 179.67378 * 2 1 3 27 27 H 0.96994 * 126.82337 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.46780 * 270.32730 * 1 2 3 29 29 H 1.08998 * 109.47188 * 30.32720 * 1 2 3 30 30 H 1.08999 * 109.47041 * 150.32974 * 1 2 3 31 31 H 1.08997 * 109.47016 * 149.71217 * 5 4 3 32 32 H 1.08996 * 109.47036 * 29.71594 * 5 4 3 33 33 H 1.09001 * 109.88389 * 300.50344 * 9 8 6 34 34 H 1.09003 * 109.87977 * 61.66684 * 9 8 6 35 35 H 0.97006 * 120.00139 * 266.45766 * 12 10 9 36 36 H 0.97000 * 120.00140 * 180.02562 * 16 15 13 37 37 H 1.09002 * 111.00945 * 206.42287 * 21 10 9 38 38 H 1.08999 * 111.00353 * 82.56825 * 21 10 9 39 39 H 1.08998 * 109.46968 * 58.54510 * 24 22 8 40 40 H 1.09003 * 109.46978 * 178.54717 * 24 22 8 41 41 H 1.08999 * 109.47251 * 298.54806 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7373 1.6236 -0.0068 6 6 5.1320 1.9281 -1.4289 7 8 4.5142 1.4350 -2.3486 8 7 6.1712 2.7493 -1.6786 9 6 7.0018 3.4133 -0.6635 10 6 8.0444 4.2694 -1.4130 11 1 8.9871 3.7312 -1.5106 12 7 8.2492 5.5503 -0.7321 13 6 9.1595 5.6465 0.2864 14 1 9.7262 4.7780 0.5880 15 6 9.3539 6.8602 0.9312 16 7 8.6630 7.9186 0.5640 17 14 10.5952 6.9913 2.3210 18 1 11.9231 7.3566 1.7658 19 1 10.1555 8.0359 3.2805 20 1 10.6935 5.6856 3.0215 21 6 7.3844 4.4848 -2.8005 22 6 6.6624 3.1313 -3.0151 23 1 7.3616 2.3840 -3.3902 24 6 5.4910 3.3005 -3.9848 25 7 3.6195 -0.6167 0.0042 26 7 2.2964 -1.0881 0.0062 27 1 2.0094 -2.0146 0.0111 28 1 -0.3633 0.0059 1.0277 29 1 -0.3633 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5087 31 1 5.5740 1.1536 0.5099 32 1 4.4698 2.5496 0.5023 33 1 6.3803 4.0516 -0.0355 34 1 7.5069 2.6662 -0.0512 35 1 7.7399 6.3304 -1.0027 36 1 8.7991 8.7669 1.0143 37 1 8.1381 4.6520 -3.5700 38 1 6.6702 5.3076 -2.7700 39 1 4.8100 4.0609 -3.6027 40 1 5.8683 3.6076 -4.9602 41 1 4.9603 2.3534 -4.0822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988824332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:55 Heat of formation + Delta-G solvation = 63.490314 kcal Electronic energy + Delta-G solvation = -23331.167861 eV Core-core repulsion = 19862.205976 eV Total energy + Delta-G solvation = -3468.961885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24394 -39.88336 -37.33908 -34.18512 -33.77690 -32.48995 -31.90030 -31.36808 -29.56186 -28.38737 -27.74768 -25.29923 -23.93542 -22.47557 -21.43075 -20.52530 -20.21295 -18.64146 -17.95753 -17.30041 -16.73522 -16.19253 -15.59503 -15.05473 -14.87010 -14.54886 -13.92600 -13.71932 -13.66658 -13.31458 -13.19719 -12.98077 -12.87659 -12.67799 -12.35513 -12.00515 -11.91381 -11.79515 -11.67434 -11.21617 -11.00448 -10.78526 -10.65990 -10.31127 -10.22230 -10.10634 -10.03004 -9.75400 -9.64728 -9.30124 -8.98924 -8.28077 -7.09979 -5.85107 -3.16225 1.46963 2.47565 2.68458 2.87139 3.34049 3.39791 3.45516 3.46837 3.85006 4.41469 4.51542 4.60163 4.74903 5.02694 5.07729 5.13194 5.23407 5.27060 5.39630 5.48303 5.51543 5.56522 5.60084 5.71471 5.87004 5.91613 6.12103 6.14774 6.16014 6.23887 6.31055 6.45050 6.51030 6.53663 6.75081 6.89051 6.90443 7.63076 7.84592 8.00582 8.32140 8.42388 9.44337 9.98300 10.33111 11.36806 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.003453 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.568724 B = 8106.403187 C = 9001.137390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.529 5.529 4 C 0.259 3.741 5 C -0.048 4.048 6 C 0.539 3.461 7 O -0.542 6.542 8 N -0.608 5.608 9 C 0.070 3.930 10 C 0.172 3.828 11 H 0.066 0.934 12 N -0.714 5.714 13 C -0.249 4.249 14 H 0.073 0.927 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.136 4.136 22 C 0.138 3.862 23 H 0.072 0.928 24 C -0.163 4.163 25 N -0.307 5.307 26 N -0.484 5.484 27 H 0.438 0.562 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -15.768 -2.862 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.258 5.258 4 C -0.025 4.025 5 C -0.090 4.090 6 C 0.326 3.674 7 O -0.420 6.420 8 N -0.342 5.342 9 C -0.056 4.056 10 C 0.060 3.940 11 H 0.084 0.916 12 N -0.354 5.354 13 C -0.380 4.380 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.175 4.175 22 C 0.035 3.965 23 H 0.090 0.910 24 C -0.220 4.220 25 N -0.135 5.135 26 N -0.203 5.203 27 H 0.283 0.717 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.001 -16.067 -3.165 20.910 hybrid contribution 0.214 -0.226 0.871 0.925 sum -12.788 -16.293 -2.294 20.838 Atomic orbital electron populations 1.20376 0.83723 1.04990 1.04431 1.24362 0.96574 0.82826 0.96048 1.70315 1.01348 1.29490 1.24654 1.23303 0.92608 0.89629 0.96920 1.19904 0.93484 0.98918 0.96705 1.19697 0.79204 0.78287 0.90225 1.90626 1.53171 1.52226 1.46019 1.48562 1.30780 1.46077 1.08826 1.23384 0.94189 0.96332 0.91722 1.21164 0.94662 0.88626 0.89516 0.91641 1.42392 1.47388 1.05646 1.39940 1.19248 1.14405 0.95306 1.09037 0.90916 1.24773 0.99932 0.95779 1.00010 1.69661 1.43583 1.00368 1.44021 0.86190 0.80896 0.77294 0.81773 1.21642 1.21733 1.20626 1.23140 0.99760 0.95856 0.98726 1.21844 0.95468 0.96143 0.83016 0.91024 1.22154 0.98034 1.03838 0.97988 1.77977 0.96549 1.12306 1.26700 1.47920 1.04335 1.09882 1.58155 0.71691 0.89047 0.88307 0.89985 0.86568 0.85915 0.90578 0.92101 0.77820 0.93328 0.90177 0.90433 0.92725 0.92445 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.28 3.12 8.24 -155.69 -1.28 1.84 16 3 N -0.53 -7.96 11.19 -8.16 -0.09 -8.05 16 4 C 0.26 4.03 6.63 -156.86 -1.04 2.99 16 5 C -0.05 -0.69 5.52 -29.04 -0.16 -0.85 16 6 C 0.54 9.02 7.62 -10.99 -0.08 8.94 16 7 O -0.54 -10.49 13.69 5.56 0.08 -10.41 16 8 N -0.61 -9.76 3.24 -163.06 -0.53 -10.29 16 9 C 0.07 1.16 6.24 -3.07 -0.02 1.14 16 10 C 0.17 3.16 3.59 -66.10 -0.24 2.92 16 11 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 12 N -0.71 -16.65 5.18 -51.66 -0.27 -16.92 16 13 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 16 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 17 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.14 -2.14 6.11 -24.59 -0.15 -2.29 16 22 C 0.14 2.10 3.77 -66.43 -0.25 1.85 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.16 -2.40 8.71 37.16 0.32 -2.08 16 25 N -0.31 -4.57 12.80 32.42 0.41 -4.15 16 26 N -0.48 -5.24 7.45 32.62 0.24 -4.99 16 27 H 0.44 2.86 8.96 -182.34 -1.63 1.23 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.39 9.72 7.71 -40.82 -0.31 9.40 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.37 5.89 -51.93 -0.31 1.06 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -34.34 344.07 -9.31 -43.66 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.28 Total: 8.30 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.77 Total: 7.44 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: 0.49 Total: -70.66 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.34 -9.31 -43.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.149 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds