Wall clock time and date at job start Tue Mar 31 2020 03:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30839 * 125.96348 * 2 1 4 4 C 1.33236 * 109.83096 * 180.12869 * 3 2 1 5 5 C 1.50702 * 125.52697 * 179.85737 * 4 3 2 6 6 C 1.50695 * 109.46956 * 269.71356 * 5 4 3 7 7 O 1.21278 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99833 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.65061 * 359.97311 * 8 6 5 10 10 C 1.54322 * 107.27223 * 181.07843 * 9 8 6 11 11 H 1.08995 * 110.72403 * 263.65428 * 10 9 8 12 12 N 1.46498 * 110.71797 * 140.55842 * 10 9 8 13 13 C 1.36938 * 119.99944 * 86.45732 * 12 10 9 14 14 H 1.07999 * 120.00452 * 359.97438 * 13 12 10 15 15 C 1.38810 * 119.99967 * 179.97438 * 13 12 10 16 16 N 1.31622 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00305 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47025 * 89.99877 * 17 15 13 19 19 H 1.48495 * 109.47468 * 210.00233 * 17 15 13 20 20 H 1.48501 * 109.46608 * 329.99991 * 17 15 13 21 21 C 1.55154 * 102.94204 * 22.19795 * 10 9 8 22 22 C 1.47426 * 125.64729 * 180.02562 * 8 6 5 23 23 H 1.08998 * 110.36718 * 274.68923 * 22 8 6 24 24 C 1.53005 * 110.36760 * 37.01198 * 22 8 6 25 25 N 1.30712 * 108.94686 * 359.58793 * 4 3 2 26 26 N 1.34431 * 125.96206 * 179.67378 * 2 1 3 27 27 H 0.96994 * 126.82337 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.46780 * 270.32730 * 1 2 3 29 29 H 1.08998 * 109.47188 * 30.32720 * 1 2 3 30 30 H 1.08999 * 109.47041 * 150.32974 * 1 2 3 31 31 H 1.08997 * 109.47016 * 149.71217 * 5 4 3 32 32 H 1.08996 * 109.47036 * 29.71594 * 5 4 3 33 33 H 1.09001 * 109.88389 * 300.50344 * 9 8 6 34 34 H 1.09003 * 109.87977 * 61.66684 * 9 8 6 35 35 H 0.97006 * 120.00139 * 266.45766 * 12 10 9 36 36 H 0.97000 * 120.00140 * 180.02562 * 16 15 13 37 37 H 1.09002 * 111.00945 * 206.42287 * 21 10 9 38 38 H 1.08999 * 111.00353 * 82.56825 * 21 10 9 39 39 H 1.08998 * 109.46968 * 58.54510 * 24 22 8 40 40 H 1.09003 * 109.46978 * 178.54717 * 24 22 8 41 41 H 1.08999 * 109.47251 * 298.54806 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7373 1.6236 -0.0068 6 6 5.1320 1.9281 -1.4289 7 8 4.5142 1.4350 -2.3486 8 7 6.1712 2.7493 -1.6786 9 6 7.0018 3.4133 -0.6635 10 6 8.0444 4.2694 -1.4130 11 1 8.9871 3.7312 -1.5106 12 7 8.2492 5.5503 -0.7321 13 6 9.1595 5.6465 0.2864 14 1 9.7262 4.7780 0.5880 15 6 9.3539 6.8602 0.9312 16 7 8.6630 7.9186 0.5640 17 14 10.5952 6.9913 2.3210 18 1 11.9231 7.3566 1.7658 19 1 10.1555 8.0359 3.2805 20 1 10.6935 5.6856 3.0215 21 6 7.3844 4.4848 -2.8005 22 6 6.6624 3.1313 -3.0151 23 1 7.3616 2.3840 -3.3902 24 6 5.4910 3.3005 -3.9848 25 7 3.6195 -0.6167 0.0042 26 7 2.2964 -1.0881 0.0062 27 1 2.0094 -2.0146 0.0111 28 1 -0.3633 0.0059 1.0277 29 1 -0.3633 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5087 31 1 5.5740 1.1536 0.5099 32 1 4.4698 2.5496 0.5023 33 1 6.3803 4.0516 -0.0355 34 1 7.5069 2.6662 -0.0512 35 1 7.7399 6.3304 -1.0027 36 1 8.7991 8.7669 1.0143 37 1 8.1381 4.6520 -3.5700 38 1 6.6702 5.3076 -2.7700 39 1 4.8100 4.0609 -3.6027 40 1 5.8683 3.6076 -4.9602 41 1 4.9603 2.3534 -4.0822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988824332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:54 Heat of formation + Delta-G solvation = 39.461998 kcal Electronic energy + Delta-G solvation = -23332.209807 eV Core-core repulsion = 19862.205976 eV Total energy + Delta-G solvation = -3470.003831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.20452 -41.21006 -38.74645 -35.93538 -34.79025 -33.38561 -33.29635 -32.98267 -30.58279 -29.99609 -28.61130 -26.61696 -25.80107 -23.73639 -22.40712 -21.81830 -21.47376 -19.91968 -19.15529 -18.88795 -18.05350 -17.50806 -16.79413 -16.42100 -16.21830 -15.75775 -15.38605 -15.24824 -14.86149 -14.42094 -14.41766 -14.24415 -13.69505 -13.62139 -13.57687 -13.27363 -13.22108 -12.98935 -12.87578 -12.78170 -12.74352 -12.34583 -12.13080 -12.04856 -11.67647 -11.52741 -11.22165 -11.12547 -10.98505 -10.71596 -10.42816 -9.61793 -9.03195 -7.90808 -5.20717 0.53115 1.53459 1.53660 1.55820 1.59253 1.62160 1.72146 2.14157 2.60318 2.97686 3.40878 3.43647 3.51304 3.81486 3.86752 3.92572 3.96984 4.21985 4.30116 4.36107 4.38155 4.52686 4.55319 4.69830 4.72375 4.76535 4.82950 4.90828 5.03416 5.13739 5.18774 5.21450 5.24407 5.30521 5.36750 5.55822 5.59411 6.20391 6.29979 6.52209 7.04731 7.11603 7.37796 8.09702 8.33233 9.32208 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.003453 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.568724 B = 8106.403187 C = 9001.137390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.571 5.571 4 C 0.241 3.759 5 C -0.045 4.045 6 C 0.538 3.462 7 O -0.570 6.570 8 N -0.607 5.607 9 C 0.082 3.918 10 C 0.166 3.834 11 H 0.073 0.927 12 N -0.725 5.725 13 C -0.240 4.240 14 H 0.083 0.917 15 C -0.072 4.072 16 N -0.968 5.968 17 Si 0.969 3.031 18 H -0.290 1.290 19 H -0.301 1.301 20 H -0.267 1.267 21 C -0.124 4.124 22 C 0.137 3.863 23 H 0.087 0.913 24 C -0.153 4.153 25 N -0.335 5.335 26 N -0.473 5.473 27 H 0.456 0.544 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 -17.587 -2.810 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.302 5.302 4 C -0.043 4.043 5 C -0.087 4.087 6 C 0.326 3.674 7 O -0.450 6.450 8 N -0.341 5.341 9 C -0.043 4.043 10 C 0.056 3.944 11 H 0.091 0.909 12 N -0.364 5.364 13 C -0.371 4.371 14 H 0.101 0.899 15 C -0.264 4.264 16 N -0.619 5.619 17 Si 0.798 3.202 18 H -0.217 1.217 19 H -0.228 1.228 20 H -0.191 1.191 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.105 0.895 24 C -0.211 4.211 25 N -0.165 5.165 26 N -0.194 5.194 27 H 0.305 0.695 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.208 0.792 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.365 -17.972 -3.125 22.614 hybrid contribution 0.230 0.225 0.782 0.846 sum -13.135 -17.747 -2.343 22.203 Atomic orbital electron populations 1.20652 0.79883 1.06435 1.06228 1.25276 0.98350 0.81908 0.93589 1.70298 1.01651 1.31600 1.26640 1.23445 0.93153 0.90004 0.97657 1.19920 0.94143 0.99364 0.95285 1.20052 0.78730 0.77763 0.90888 1.90612 1.53977 1.53315 1.47085 1.48576 1.30633 1.45781 1.09062 1.23070 0.93545 0.96274 0.91455 1.21360 0.95581 0.86899 0.90604 0.90918 1.42534 1.46906 1.07061 1.39921 1.19651 1.13662 0.95234 1.08590 0.89905 1.25517 1.02247 0.95853 1.02793 1.69812 1.45755 1.00659 1.45631 0.85211 0.78548 0.77357 0.79061 1.21706 1.22751 1.19127 1.23045 0.99721 0.95847 0.97667 1.21958 0.95793 0.96019 0.82775 0.89519 1.22048 0.97485 1.02439 0.99102 1.77845 0.98915 1.12206 1.27538 1.47837 1.03120 1.10975 1.57421 0.69531 0.86854 0.88559 0.86792 0.84875 0.85423 0.92040 0.90526 0.79205 0.94109 0.88416 0.91521 0.94029 0.89999 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.29 5.96 8.24 138.22 1.14 7.10 16 3 N -0.57 -17.00 11.19 -179.72 -2.01 -19.01 16 4 C 0.24 7.45 6.63 138.63 0.92 8.37 16 5 C -0.05 -1.29 5.52 29.10 0.16 -1.13 16 6 C 0.54 17.79 7.62 87.66 0.67 18.46 16 7 O -0.57 -22.02 13.69 -3.02 -0.04 -22.06 16 8 N -0.61 -18.89 3.24 -788.20 -2.56 -21.44 16 9 C 0.08 2.65 6.24 86.73 0.54 3.19 16 10 C 0.17 5.86 3.59 46.18 0.17 6.03 16 11 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 12 N -0.73 -33.58 5.18 -317.35 -1.64 -35.22 16 13 C -0.24 -12.31 9.98 84.03 0.84 -11.47 16 14 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 15 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 16 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 17 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 C -0.12 -3.74 6.11 31.98 0.20 -3.54 16 22 C 0.14 3.95 3.77 45.46 0.17 4.12 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 24 C -0.15 -4.36 8.71 71.98 0.63 -3.74 16 25 N -0.34 -9.79 12.80 -51.34 -0.66 -10.45 16 26 N -0.47 -9.56 7.45 -50.70 -0.38 -9.94 16 27 H 0.46 5.09 8.96 -213.10 -1.91 3.18 16 28 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.38 19.05 7.71 -92.70 -0.72 18.34 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 2.12 5.89 -2.39 -0.01 2.11 16 Total: -1.00 -74.57 344.07 0.10 -74.47 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -1.56 Total: 30.23 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.64 Total: 24.04 kcal Atomic # 7 Polarization: -145.95 SS G_CDS: -6.96 Total: -152.91 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.04 Total: -22.06 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.57 0.10 -74.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988824332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.930 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds