Wall clock time and date at job start Tue Mar 31 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00206 * 2 1 4 4 H 1.48507 * 109.46906 * 270.00059 * 3 2 1 5 5 H 1.48504 * 109.46993 * 29.99632 * 3 2 1 6 6 H 1.48495 * 109.47523 * 149.99675 * 3 2 1 7 7 C 1.38819 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45832 * 154.99808 * 10 9 7 12 12 C 1.53198 * 109.31177 * 181.38808 * 11 10 9 13 13 N 1.46923 * 108.77299 * 305.36422 * 12 11 10 14 14 C 1.34777 * 120.63207 * 233.58527 * 13 12 11 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35311 * 125.86532 * 124.71073 * 18 17 16 20 20 C 1.35349 * 106.17207 * 179.90472 * 19 18 17 21 21 N 1.33767 * 106.49736 * 0.35700 * 20 19 18 22 22 N 1.28629 * 108.88484 * 359.77207 * 21 20 19 23 23 C 1.46927 * 118.73975 * 53.86605 * 13 12 11 24 24 C 1.53036 * 109.46173 * 275.06854 * 10 9 7 25 25 H 0.96995 * 120.00224 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99538 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.45762 * 35.03051 * 10 9 7 28 28 H 1.08994 * 109.49924 * 61.43545 * 11 10 9 29 29 H 1.09001 * 109.52593 * 301.35528 * 11 10 9 30 30 H 1.08998 * 109.58424 * 185.58284 * 12 11 10 31 31 H 1.08995 * 109.70385 * 65.22309 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 33 33 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 34 34 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 36 36 H 1.08005 * 126.91021 * 0.02578 * 19 18 17 37 37 H 1.08007 * 126.75155 * 180.12795 * 20 19 18 38 38 H 1.09001 * 109.59036 * 65.91893 * 23 13 12 39 39 H 1.09001 * 109.58801 * 186.35057 * 23 13 12 40 40 H 1.08998 * 109.49507 * 298.56432 * 24 10 9 41 41 H 1.08996 * 109.50106 * 58.63099 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9620 -6.0695 0.6406 13 7 2.4414 -6.3659 -0.7162 14 6 2.1735 -7.5532 -1.2951 15 8 1.5306 -8.3888 -0.6955 16 6 2.6728 -7.8426 -2.6872 17 6 2.2342 -9.2476 -3.1046 18 7 2.7191 -9.5286 -4.4582 19 6 3.4797 -10.5861 -4.8243 20 6 3.6924 -10.4551 -6.1545 21 7 3.0664 -9.3344 -6.5307 22 7 2.4994 -8.8090 -5.5025 23 6 3.2239 -5.3459 -1.4276 24 6 2.4234 -4.0346 -1.4367 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.9685 -3.5505 0.5905 28 1 0.2814 -4.8763 0.0068 29 1 0.9008 -4.4718 1.6259 30 1 1.3098 -6.8735 0.9814 31 1 2.8121 -5.9770 1.3165 32 1 3.7610 -7.7815 -2.7030 33 1 2.2579 -7.1116 -3.3812 34 1 1.1460 -9.3082 -3.0890 35 1 2.6488 -9.9788 -2.4106 36 1 3.8424 -11.3768 -4.1841 37 1 4.2595 -11.1220 -6.7871 38 1 4.1749 -5.1931 -0.9174 39 1 3.4045 -5.6724 -2.4518 40 1 1.5127 -4.1655 -2.0211 41 1 3.0285 -3.2430 -1.8785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991760710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:42 Heat of formation + Delta-G solvation = 75.946871 kcal Electronic energy + Delta-G solvation = -23083.022802 eV Core-core repulsion = 19614.601074 eV Total energy + Delta-G solvation = -3468.421728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.49624 -40.30433 -37.63921 -35.53969 -34.60036 -32.34689 -31.57863 -31.27369 -30.52843 -29.28196 -26.06703 -24.61876 -23.11208 -22.97085 -22.58973 -21.61264 -20.31100 -18.95533 -18.20342 -17.14074 -16.81831 -16.73974 -16.04370 -15.65983 -15.21247 -14.89121 -14.53476 -14.16511 -13.84052 -13.79536 -13.61734 -13.32766 -13.17665 -12.83309 -12.38078 -12.12137 -11.99418 -11.74423 -11.65214 -11.15820 -11.04432 -10.94139 -10.87234 -10.57664 -10.43179 -10.28255 -9.97365 -9.88768 -9.72750 -9.66478 -8.96537 -8.66507 -7.03683 -5.82351 -3.12077 1.31989 1.97231 2.33617 2.41962 2.94737 3.39510 3.44624 3.46534 4.01326 4.20004 4.24397 4.39307 4.53088 4.72035 4.80304 4.93541 4.97724 5.09093 5.21789 5.24983 5.26834 5.30788 5.46319 5.49660 5.54071 5.63013 5.84723 5.88015 5.89233 6.13782 6.25344 6.26476 6.30146 6.42395 6.50787 6.80238 6.96016 7.30830 7.63439 7.96790 8.25608 8.35717 9.47047 10.03860 10.38270 11.40122 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002912 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.575416 B = 9613.038355 C =10404.917762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.600 5.600 14 C 0.522 3.478 15 O -0.552 6.552 16 C -0.155 4.155 17 C 0.132 3.868 18 N -0.290 5.290 19 C -0.050 4.050 20 C -0.055 4.055 21 N -0.273 5.273 22 N -0.082 5.082 23 C 0.104 3.896 24 C -0.152 4.152 25 H 0.256 0.744 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 -21.786 -4.747 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.007 4.007 13 N -0.333 5.333 14 C 0.309 3.691 15 O -0.432 6.432 16 C -0.196 4.196 17 C 0.011 3.989 18 N -0.084 5.084 19 C -0.201 4.201 20 C -0.212 4.212 21 N -0.139 5.139 22 N -0.062 5.062 23 C -0.019 4.019 24 C -0.193 4.193 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.208 0.792 37 H 0.206 0.794 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.677 -20.762 -4.925 22.678 hybrid contribution 0.739 0.090 0.423 0.856 sum 8.417 -20.672 -4.502 22.769 Atomic orbital electron populations 1.69656 1.05150 1.25772 1.57377 1.24760 0.95504 0.97757 1.02830 0.86205 0.78647 0.83858 0.77550 1.21675 1.21755 1.20753 1.19219 0.90947 0.84066 1.43077 0.91167 1.42432 1.05821 0.99680 1.88484 1.20159 0.94460 0.86145 0.92375 1.22212 0.99224 0.94012 1.02378 1.21663 0.98852 0.98253 0.81896 1.48156 1.53324 1.14633 1.17138 1.20084 0.79883 0.81899 0.87216 1.90704 1.40964 1.46211 1.65283 1.21908 1.03824 0.97574 0.96287 1.21870 1.02446 0.98240 0.76386 1.47601 1.33849 1.16783 1.10188 1.23739 1.01849 0.96269 0.98196 1.23652 1.05208 0.98584 0.93768 1.75150 1.10111 1.08369 1.20228 1.78347 1.20164 1.18686 0.89048 1.22042 0.94557 0.88924 0.96420 1.22772 1.00073 0.94555 1.01890 0.93430 0.78232 0.93405 0.91758 0.90420 0.89242 0.91389 0.88021 0.86763 0.87172 0.86678 0.79243 0.79378 0.91137 0.90402 0.92014 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.72 -17.33 5.12 -53.38 -0.27 -17.60 16 10 C 0.18 3.25 2.73 -67.89 -0.19 3.07 16 11 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 12 C 0.12 1.50 6.43 -3.71 -0.02 1.48 16 13 N -0.60 -7.36 2.97 -172.50 -0.51 -7.87 16 14 C 0.52 6.14 7.70 -10.99 -0.08 6.06 16 15 O -0.55 -7.90 15.40 5.55 0.09 -7.82 16 16 C -0.16 -1.36 4.17 -27.89 -0.12 -1.48 16 17 C 0.13 1.03 5.74 -4.04 -0.02 1.01 16 18 N -0.29 -2.70 3.44 -61.26 -0.21 -2.91 16 19 C -0.05 -0.35 11.57 -17.05 -0.20 -0.55 16 20 C -0.05 -0.47 12.05 -17.74 -0.21 -0.68 16 21 N -0.27 -3.44 12.41 30.24 0.38 -3.07 16 22 N -0.08 -1.03 12.91 60.35 0.78 -0.25 16 23 C 0.10 1.21 6.37 -3.48 -0.02 1.18 16 24 C -0.15 -2.40 5.67 -26.38 -0.15 -2.55 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 27 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.75 7.93 -51.93 -0.41 0.33 16 33 H 0.11 1.08 7.68 -51.93 -0.40 0.68 16 34 H 0.11 0.93 8.10 -51.93 -0.42 0.50 16 35 H 0.12 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.19 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -33.59 341.25 -6.31 -39.90 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.99 Total: 6.38 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.41 Total: -1.81 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.88 Total: -58.68 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.59 -6.31 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991760710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.845 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds