Wall clock time and date at job start Tue Mar 31 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00206 * 2 1 4 4 H 1.48507 * 109.46906 * 270.00059 * 3 2 1 5 5 H 1.48504 * 109.46993 * 29.99632 * 3 2 1 6 6 H 1.48495 * 109.47523 * 149.99675 * 3 2 1 7 7 C 1.38819 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45832 * 154.99808 * 10 9 7 12 12 C 1.53198 * 109.31177 * 181.38808 * 11 10 9 13 13 N 1.46923 * 108.77299 * 305.36422 * 12 11 10 14 14 C 1.34777 * 120.63207 * 233.58527 * 13 12 11 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35311 * 125.86532 * 124.71073 * 18 17 16 20 20 C 1.35349 * 106.17207 * 179.90472 * 19 18 17 21 21 N 1.33767 * 106.49736 * 0.35700 * 20 19 18 22 22 N 1.28629 * 108.88484 * 359.77207 * 21 20 19 23 23 C 1.46927 * 118.73975 * 53.86605 * 13 12 11 24 24 C 1.53036 * 109.46173 * 275.06854 * 10 9 7 25 25 H 0.96995 * 120.00224 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99538 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.45762 * 35.03051 * 10 9 7 28 28 H 1.08994 * 109.49924 * 61.43545 * 11 10 9 29 29 H 1.09001 * 109.52593 * 301.35528 * 11 10 9 30 30 H 1.08998 * 109.58424 * 185.58284 * 12 11 10 31 31 H 1.08995 * 109.70385 * 65.22309 * 12 11 10 32 32 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 33 33 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 34 34 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 36 36 H 1.08005 * 126.91021 * 0.02578 * 19 18 17 37 37 H 1.08007 * 126.75155 * 180.12795 * 20 19 18 38 38 H 1.09001 * 109.59036 * 65.91893 * 23 13 12 39 39 H 1.09001 * 109.58801 * 186.35057 * 23 13 12 40 40 H 1.08998 * 109.49507 * 298.56432 * 24 10 9 41 41 H 1.08996 * 109.50106 * 58.63099 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9620 -6.0695 0.6406 13 7 2.4414 -6.3659 -0.7162 14 6 2.1735 -7.5532 -1.2951 15 8 1.5306 -8.3888 -0.6955 16 6 2.6728 -7.8426 -2.6872 17 6 2.2342 -9.2476 -3.1046 18 7 2.7191 -9.5286 -4.4582 19 6 3.4797 -10.5861 -4.8243 20 6 3.6924 -10.4551 -6.1545 21 7 3.0664 -9.3344 -6.5307 22 7 2.4994 -8.8090 -5.5025 23 6 3.2239 -5.3459 -1.4276 24 6 2.4234 -4.0346 -1.4367 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.9685 -3.5505 0.5905 28 1 0.2814 -4.8763 0.0068 29 1 0.9008 -4.4718 1.6259 30 1 1.3098 -6.8735 0.9814 31 1 2.8121 -5.9770 1.3165 32 1 3.7610 -7.7815 -2.7030 33 1 2.2579 -7.1116 -3.3812 34 1 1.1460 -9.3082 -3.0890 35 1 2.6488 -9.9788 -2.4106 36 1 3.8424 -11.3768 -4.1841 37 1 4.2595 -11.1220 -6.7871 38 1 4.1749 -5.1931 -0.9174 39 1 3.4045 -5.6724 -2.4518 40 1 1.5127 -4.1655 -2.0211 41 1 3.0285 -3.2430 -1.8785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991760710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:41 Heat of formation + Delta-G solvation = 52.287329 kcal Electronic energy + Delta-G solvation = -23084.048757 eV Core-core repulsion = 19614.601074 eV Total energy + Delta-G solvation = -3469.447683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.16728 -41.30887 -38.86302 -36.29905 -36.13412 -33.91601 -32.68297 -31.93746 -31.52225 -30.90707 -27.11896 -26.01964 -24.44315 -23.96824 -23.53827 -22.41477 -21.54183 -20.04709 -19.12298 -18.89430 -17.65337 -17.54488 -16.92251 -16.70463 -16.55037 -15.81296 -15.49889 -15.43214 -15.26276 -15.03533 -14.90604 -14.38427 -14.28782 -13.75854 -13.59031 -13.23184 -13.12079 -12.84759 -12.81082 -12.64080 -12.43413 -12.20820 -12.15126 -12.02166 -11.83288 -11.71321 -11.31733 -11.19271 -10.98648 -10.82870 -10.30429 -9.72108 -9.01678 -7.94157 -5.22867 0.68673 1.34107 1.47638 1.48911 1.49768 1.57101 1.67007 2.03247 2.56224 3.38102 3.40481 3.42463 3.63283 3.78333 3.80884 3.92178 4.06514 4.15212 4.21040 4.27108 4.36175 4.36356 4.40699 4.47151 4.61739 4.63728 4.76823 4.83467 4.84689 4.90547 5.00923 5.06781 5.29466 5.31599 5.47471 5.52889 5.60337 5.66475 6.27635 6.34236 7.02315 7.33640 7.55888 8.09977 8.32001 9.29611 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023473 B = 0.002912 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.575416 B = 9613.038355 C =10404.917762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.289 1.289 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.740 5.740 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.124 3.876 13 N -0.605 5.605 14 C 0.524 3.476 15 O -0.577 6.577 16 C -0.146 4.146 17 C 0.133 3.867 18 N -0.290 5.290 19 C -0.031 4.031 20 C -0.066 4.066 21 N -0.315 5.315 22 N -0.129 5.129 23 C 0.115 3.885 24 C -0.144 4.144 25 H 0.249 0.751 26 H 0.370 0.630 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.236 0.764 37 H 0.218 0.782 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.043 0.957 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -23.940 -4.610 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.379 5.379 10 C 0.064 3.936 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.337 5.337 14 C 0.313 3.687 15 O -0.458 6.458 16 C -0.186 4.186 17 C 0.013 3.987 18 N -0.084 5.084 19 C -0.182 4.182 20 C -0.224 4.224 21 N -0.180 5.180 22 N -0.108 5.108 23 C -0.008 4.008 24 C -0.184 4.184 25 H 0.058 0.942 26 H 0.201 0.799 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.160 0.840 36 H 0.252 0.748 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.318 -22.946 -4.802 25.613 hybrid contribution -0.045 0.614 0.400 0.734 sum 10.273 -22.332 -4.402 24.973 Atomic orbital electron populations 1.69820 1.06729 1.25926 1.59908 1.25561 0.96298 1.01145 1.04127 0.85178 0.77812 0.79699 0.77324 1.21627 1.22626 1.19116 1.19634 0.91498 0.85061 1.40390 0.90220 1.42688 1.05394 1.01149 1.88628 1.20436 0.94380 0.84652 0.94100 1.22069 0.98551 0.94761 1.01436 1.21540 0.99189 0.96235 0.82949 1.48207 1.53484 1.15061 1.16902 1.20507 0.79040 0.81227 0.87921 1.90697 1.41958 1.46968 1.66157 1.21836 1.04991 0.98038 0.93768 1.21938 1.02142 0.98410 0.76243 1.47725 1.33718 1.17034 1.09903 1.24477 0.99650 0.95862 0.98222 1.24282 1.05079 0.97956 0.95099 1.75086 1.11410 1.10320 1.21162 1.78305 1.22134 1.20382 0.89978 1.22000 0.94118 0.86356 0.98311 1.22549 0.99788 0.96781 0.99325 0.94193 0.79924 0.93071 0.93338 0.90945 0.89340 0.89460 0.85802 0.87554 0.88176 0.84037 0.74781 0.76561 0.89068 0.87827 0.93792 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -35.99 5.12 -322.81 -1.65 -37.64 16 10 C 0.17 6.20 2.73 45.02 0.12 6.32 16 11 C -0.13 -3.98 5.55 30.67 0.17 -3.81 16 12 C 0.12 2.98 6.43 86.37 0.56 3.54 16 13 N -0.60 -13.41 2.97 -818.05 -2.43 -15.83 16 14 C 0.52 11.10 7.70 87.66 0.67 11.78 16 15 O -0.58 -15.37 15.40 -3.05 -0.05 -15.41 16 16 C -0.15 -2.17 4.17 29.85 0.12 -2.05 16 17 C 0.13 1.76 5.74 86.38 0.50 2.25 16 18 N -0.29 -4.73 3.44 -347.72 -1.20 -5.93 16 19 C -0.03 -0.33 11.57 83.49 0.97 0.64 16 20 C -0.07 -0.99 12.05 83.73 1.01 0.02 16 21 N -0.31 -7.73 12.41 -58.26 -0.72 -8.45 16 22 N -0.13 -3.14 12.91 37.02 0.48 -2.66 16 23 C 0.11 2.36 6.37 86.51 0.55 2.91 16 24 C -0.14 -4.42 5.67 30.82 0.17 -4.24 16 25 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.37 19.83 7.80 -92.71 -0.72 19.10 16 27 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.21 7.00 -2.39 -0.02 2.19 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.12 1.33 7.93 -2.39 -0.02 1.31 16 33 H 0.11 1.84 7.68 -2.39 -0.02 1.82 16 34 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.14 1.12 8.03 -2.39 -0.02 1.10 16 36 H 0.24 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.66 5.93 -2.39 -0.01 1.65 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.33 341.25 3.20 -72.12 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.31 Total: 23.87 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.15 Total: 1.63 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -5.24 Total: -129.71 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.05 Total: -15.41 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.33 3.20 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991760710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.410 kcal (2) G-P(sol) polarization free energy of solvation -75.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds