Wall clock time and date at job start Tue Mar 31 2020 03:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28702 * 126.03892 * 2 1 4 4 N 1.28513 * 110.63917 * 179.73698 * 3 2 1 5 5 C 1.33313 * 109.44160 * 0.02562 * 4 3 2 6 6 C 1.37007 * 106.36953 * 359.97438 * 5 4 3 7 7 C 1.47240 * 127.18833 * 180.02562 * 6 5 4 8 8 O 1.21615 * 119.99844 * 184.74661 * 7 6 5 9 9 N 1.34776 * 120.00097 * 4.74534 * 7 6 5 10 10 C 1.47022 * 125.64810 * 4.25655 * 9 7 6 11 11 C 1.54316 * 107.27039 * 181.02016 * 10 9 7 12 12 H 1.09005 * 110.71867 * 140.73285 * 11 10 9 13 13 N 1.46496 * 110.72418 * 263.82725 * 11 10 9 14 14 C 1.36938 * 119.99934 * 273.54898 * 13 11 10 15 15 H 1.08003 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99882 * 179.97438 * 14 13 11 17 17 N 1.31626 * 120.00075 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00220 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46867 * 89.99796 * 18 16 14 20 20 H 1.48498 * 109.47252 * 209.99506 * 18 16 14 21 21 H 1.48501 * 109.46897 * 330.00099 * 18 16 14 22 22 C 1.55156 * 102.94480 * 22.19155 * 11 10 9 23 23 C 1.53007 * 111.00335 * 82.57115 * 22 11 10 24 24 C 1.52995 * 111.00717 * 206.38647 * 22 11 10 25 25 C 1.47422 * 125.64919 * 183.94601 * 9 7 6 26 26 H 1.08994 * 109.47355 * 85.13780 * 1 2 3 27 27 H 1.09002 * 109.47128 * 205.14259 * 1 2 3 28 28 H 1.09002 * 109.46620 * 325.14212 * 1 2 3 29 29 H 1.07999 * 126.81796 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.87864 * 300.43639 * 10 9 7 31 31 H 1.08999 * 109.88369 * 61.59971 * 10 9 7 32 32 H 0.96997 * 120.00088 * 93.53952 * 13 11 10 33 33 H 0.96998 * 119.99957 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.46909 * 60.00295 * 23 22 11 35 35 H 1.08999 * 109.47232 * 180.02562 * 23 22 11 36 36 H 1.08997 * 109.47000 * 300.00261 * 23 22 11 37 37 H 1.08990 * 109.47269 * 59.99522 * 24 22 11 38 38 H 1.08996 * 109.47370 * 180.02562 * 24 22 11 39 39 H 1.09005 * 109.47130 * 299.99434 * 24 22 11 40 40 H 1.08998 * 110.36271 * 274.74827 * 25 9 7 41 41 H 1.08998 * 110.36528 * 37.06412 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0407 0.0000 4 7 3.4612 0.6994 0.0055 5 6 3.5552 -0.6304 0.0089 6 6 2.2711 -1.1082 0.0057 7 6 1.8461 -2.5179 0.0080 8 8 0.6660 -2.7974 -0.0826 9 7 2.7649 -3.4986 0.1105 10 6 4.2078 -3.3031 0.3141 11 6 4.8600 -4.7014 0.3431 12 1 5.8170 -4.6914 -0.1787 13 7 5.0286 -5.1663 1.7220 14 6 6.1492 -4.8205 2.4290 15 1 6.9090 -4.2054 1.9698 16 6 6.3087 -5.2606 3.7358 17 7 7.3861 -4.9287 4.4152 18 14 4.9949 -6.3251 4.5298 19 1 5.2963 -7.7565 4.2738 20 1 4.9754 -6.0776 5.9939 21 1 3.6689 -5.9875 3.9528 22 6 3.8285 -5.5817 -0.4108 23 6 4.0109 -5.4650 -1.9254 24 6 3.9205 -7.0412 0.0388 25 6 2.4887 -4.9452 0.0434 26 1 -0.3634 0.0871 -1.0239 27 1 -0.3633 -0.9303 0.4366 28 1 -0.3633 0.8433 0.5874 29 1 4.4632 -1.2150 0.0141 30 1 4.6220 -2.7178 -0.5069 31 1 4.3827 -2.7927 1.2612 32 1 4.3463 -5.7189 2.1344 33 1 7.4974 -5.2359 5.3285 34 1 5.0144 -5.7926 -2.1968 35 1 3.2750 -6.0916 -2.4294 36 1 3.8729 -4.4273 -2.2291 37 1 3.7195 -7.1054 1.1081 38 1 3.1871 -7.6361 -0.5055 39 1 4.9211 -7.4222 -0.1663 40 1 2.2004 -5.3221 1.0246 41 1 1.7057 -5.1484 -0.6871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995746200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:01 Heat of formation + Delta-G solvation = 95.504758 kcal Electronic energy + Delta-G solvation = -24569.992427 eV Core-core repulsion = 21102.418793 eV Total energy + Delta-G solvation = -3467.573634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.32827 -40.23037 -38.17869 -34.88899 -34.15419 -33.54705 -31.39489 -31.16212 -28.59063 -28.14200 -27.04388 -26.64786 -24.34582 -23.13023 -22.27770 -21.47782 -19.81200 -19.19226 -17.70171 -17.10287 -16.97061 -16.90808 -15.99679 -15.53596 -14.80255 -14.61840 -14.54652 -13.86165 -13.81065 -13.46371 -13.22252 -13.11426 -12.86351 -12.61533 -12.31806 -12.21916 -12.09370 -11.92983 -11.80061 -11.34068 -11.18179 -11.05693 -10.74349 -10.67837 -10.39277 -10.28476 -10.15070 -10.00931 -9.68478 -9.52203 -9.11385 -8.60161 -7.45984 -5.89964 -3.28067 0.89128 1.98874 2.29111 2.96813 3.05196 3.27537 3.29405 3.37285 4.17506 4.33838 4.46773 4.60436 4.68076 4.79776 4.85470 4.88319 4.95071 5.14711 5.22912 5.38339 5.39581 5.49181 5.51471 5.63540 5.70471 5.80991 5.87380 5.95655 5.98395 6.02629 6.08068 6.12685 6.25605 6.31026 6.34328 6.52398 6.55787 7.43274 7.83263 7.93528 8.28353 8.30838 9.04664 9.77003 9.94360 11.27480 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.005394 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.978115 B = 5189.721165 C = 5943.802175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.259 5.259 3 N -0.065 5.065 4 N -0.274 5.274 5 C -0.003 4.003 6 C -0.065 4.065 7 C 0.607 3.393 8 O -0.551 6.551 9 N -0.587 5.587 10 C 0.056 3.944 11 C 0.185 3.815 12 H 0.085 0.915 13 N -0.736 5.736 14 C -0.254 4.254 15 H 0.094 0.906 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.878 3.122 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.128 4.128 25 C 0.123 3.877 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.210 0.790 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.364 0.636 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 2.112 -12.329 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.056 5.056 3 N -0.046 5.046 4 N -0.136 5.136 5 C -0.163 4.163 6 C -0.198 4.198 7 C 0.394 3.606 8 O -0.431 6.431 9 N -0.318 5.318 10 C -0.069 4.069 11 C 0.073 3.927 12 H 0.102 0.898 13 N -0.378 5.378 14 C -0.383 4.383 15 H 0.112 0.888 16 C -0.183 4.183 17 N -0.573 5.573 18 Si 0.708 3.292 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.093 4.093 23 C -0.188 4.188 24 C -0.185 4.185 25 C 0.001 3.999 26 H 0.112 0.888 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.233 3.646 -12.264 17.701 hybrid contribution -1.043 -1.714 0.881 2.191 sum -13.276 1.933 -11.383 17.594 Atomic orbital electron populations 1.22523 0.71692 1.06809 1.05324 1.47589 1.09714 1.03471 1.44826 1.78227 0.96954 1.11589 1.17835 1.74919 1.08880 1.12830 1.17009 1.24683 0.97616 0.91771 1.02194 1.21851 0.91536 0.90679 1.15776 1.16222 0.84769 0.82150 0.77500 1.90753 1.16231 1.83499 1.52588 1.48023 1.08605 1.06140 1.69077 1.23745 0.78679 1.02910 1.01574 1.21213 0.95931 0.88696 0.86828 0.89771 1.42821 1.23363 1.61592 1.10027 1.19035 0.96541 1.27852 0.94869 0.88790 1.24650 0.96978 1.00056 0.96660 1.69688 1.27268 1.49255 1.11065 0.86672 0.82026 0.81218 0.79288 1.20796 1.21633 1.20422 1.22110 0.94720 0.96443 0.96011 1.21685 1.02042 1.01714 0.93355 1.21602 1.02301 0.93305 1.01324 1.22416 0.97632 0.78355 1.01533 0.88830 0.86549 0.88204 0.77348 0.91297 0.89221 0.80168 0.92859 0.91819 0.92599 0.92641 0.92209 0.93036 0.91372 0.91058 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 11.01 59.85 0.66 1.39 16 2 N -0.26 -3.55 3.79 -64.11 -0.24 -3.79 16 3 N -0.07 -1.00 13.14 60.35 0.79 -0.20 16 4 N -0.27 -4.42 12.35 30.47 0.38 -4.05 16 5 C 0.00 -0.04 10.59 -17.36 -0.18 -0.22 16 6 C -0.06 -0.95 6.93 -82.33 -0.57 -1.52 16 7 C 0.61 9.31 7.83 -12.60 -0.10 9.21 16 8 O -0.55 -9.16 15.10 5.26 0.08 -9.08 16 9 N -0.59 -8.59 3.31 -171.73 -0.57 -9.15 16 10 C 0.06 0.82 4.49 -3.07 -0.01 0.81 16 11 C 0.19 2.92 2.86 -66.10 -0.19 2.73 16 12 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 13 N -0.74 -15.02 4.41 -51.66 -0.23 -15.25 16 14 C -0.25 -6.40 10.46 -15.06 -0.16 -6.56 16 15 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 17 N -0.93 -27.55 13.97 55.49 0.78 -26.78 16 18 Si 0.88 20.85 27.74 -169.99 -4.71 16.13 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 22 C -0.09 -1.18 0.83 -152.24 -0.13 -1.30 16 23 C -0.13 -1.38 8.59 37.16 0.32 -1.06 16 24 C -0.13 -1.64 8.22 37.15 0.31 -1.34 16 25 C 0.12 1.69 5.81 -2.41 -0.01 1.68 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.12 1.19 6.29 -51.93 -0.33 0.86 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.21 2.68 4.63 -52.49 -0.24 2.44 16 30 H 0.07 0.84 6.24 -51.93 -0.32 0.51 16 31 H 0.09 1.52 7.55 -51.93 -0.39 1.13 16 32 H 0.36 7.50 3.96 -40.82 -0.16 7.34 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 37 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.07 7.99 -51.93 -0.41 0.65 16 41 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -31.57 329.84 -4.49 -36.06 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.56 Total: 7.06 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.17 Total: 4.08 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.90 Total: -59.23 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.57 -4.49 -36.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995746200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.561 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds