Wall clock time and date at job start Tue Mar 31 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28702 * 126.03892 * 2 1 4 4 N 1.28513 * 110.63917 * 179.73698 * 3 2 1 5 5 C 1.33313 * 109.44160 * 0.02562 * 4 3 2 6 6 C 1.37007 * 106.36953 * 359.97438 * 5 4 3 7 7 C 1.47240 * 127.18833 * 180.02562 * 6 5 4 8 8 O 1.21615 * 119.99844 * 184.74661 * 7 6 5 9 9 N 1.34776 * 120.00097 * 4.74534 * 7 6 5 10 10 C 1.47022 * 125.64810 * 4.25655 * 9 7 6 11 11 C 1.54316 * 107.27039 * 181.02016 * 10 9 7 12 12 H 1.09005 * 110.71867 * 140.73285 * 11 10 9 13 13 N 1.46496 * 110.72418 * 263.82725 * 11 10 9 14 14 C 1.36938 * 119.99934 * 273.54898 * 13 11 10 15 15 H 1.08003 * 120.00333 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99882 * 179.97438 * 14 13 11 17 17 N 1.31626 * 120.00075 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00220 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46867 * 89.99796 * 18 16 14 20 20 H 1.48498 * 109.47252 * 209.99506 * 18 16 14 21 21 H 1.48501 * 109.46897 * 330.00099 * 18 16 14 22 22 C 1.55156 * 102.94480 * 22.19155 * 11 10 9 23 23 C 1.53007 * 111.00335 * 82.57115 * 22 11 10 24 24 C 1.52995 * 111.00717 * 206.38647 * 22 11 10 25 25 C 1.47422 * 125.64919 * 183.94601 * 9 7 6 26 26 H 1.08994 * 109.47355 * 85.13780 * 1 2 3 27 27 H 1.09002 * 109.47128 * 205.14259 * 1 2 3 28 28 H 1.09002 * 109.46620 * 325.14212 * 1 2 3 29 29 H 1.07999 * 126.81796 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.87864 * 300.43639 * 10 9 7 31 31 H 1.08999 * 109.88369 * 61.59971 * 10 9 7 32 32 H 0.96997 * 120.00088 * 93.53952 * 13 11 10 33 33 H 0.96998 * 119.99957 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.46909 * 60.00295 * 23 22 11 35 35 H 1.08999 * 109.47232 * 180.02562 * 23 22 11 36 36 H 1.08997 * 109.47000 * 300.00261 * 23 22 11 37 37 H 1.08990 * 109.47269 * 59.99522 * 24 22 11 38 38 H 1.08996 * 109.47370 * 180.02562 * 24 22 11 39 39 H 1.09005 * 109.47130 * 299.99434 * 24 22 11 40 40 H 1.08998 * 110.36271 * 274.74827 * 25 9 7 41 41 H 1.08998 * 110.36528 * 37.06412 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0407 0.0000 4 7 3.4612 0.6994 0.0055 5 6 3.5552 -0.6304 0.0089 6 6 2.2711 -1.1082 0.0057 7 6 1.8461 -2.5179 0.0080 8 8 0.6660 -2.7974 -0.0826 9 7 2.7649 -3.4986 0.1105 10 6 4.2078 -3.3031 0.3141 11 6 4.8600 -4.7014 0.3431 12 1 5.8170 -4.6914 -0.1787 13 7 5.0286 -5.1663 1.7220 14 6 6.1492 -4.8205 2.4290 15 1 6.9090 -4.2054 1.9698 16 6 6.3087 -5.2606 3.7358 17 7 7.3861 -4.9287 4.4152 18 14 4.9949 -6.3251 4.5298 19 1 5.2963 -7.7565 4.2738 20 1 4.9754 -6.0776 5.9939 21 1 3.6689 -5.9875 3.9528 22 6 3.8285 -5.5817 -0.4108 23 6 4.0109 -5.4650 -1.9254 24 6 3.9205 -7.0412 0.0388 25 6 2.4887 -4.9452 0.0434 26 1 -0.3634 0.0871 -1.0239 27 1 -0.3633 -0.9303 0.4366 28 1 -0.3633 0.8433 0.5874 29 1 4.4632 -1.2150 0.0141 30 1 4.6220 -2.7178 -0.5069 31 1 4.3827 -2.7927 1.2612 32 1 4.3463 -5.7189 2.1344 33 1 7.4974 -5.2359 5.3285 34 1 5.0144 -5.7926 -2.1968 35 1 3.2750 -6.0916 -2.4294 36 1 3.8729 -4.4273 -2.2291 37 1 3.7195 -7.1054 1.1081 38 1 3.1871 -7.6361 -0.5055 39 1 4.9211 -7.4222 -0.1663 40 1 2.2004 -5.3221 1.0246 41 1 1.7057 -5.1484 -0.6871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995746200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:59 Heat of formation + Delta-G solvation = 73.099141 kcal Electronic energy + Delta-G solvation = -24570.964007 eV Core-core repulsion = 21102.418793 eV Total energy + Delta-G solvation = -3468.545215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -44.45294 -41.42462 -39.40785 -36.09349 -35.61396 -34.81465 -33.05323 -32.46446 -29.91278 -29.09507 -28.08115 -27.73032 -25.82549 -24.52943 -23.37699 -22.86740 -20.94972 -20.53248 -19.38826 -18.26010 -18.08472 -18.00680 -17.27263 -16.75273 -16.38239 -16.05716 -15.72949 -15.25508 -14.87114 -14.56876 -14.47753 -14.29600 -13.97360 -13.77609 -13.64107 -13.45073 -13.26607 -13.19471 -12.88646 -12.76956 -12.64464 -12.27848 -12.23495 -11.93571 -11.84251 -11.57906 -11.40472 -11.30946 -11.22435 -10.96865 -10.67868 -9.80702 -9.30856 -7.98848 -5.31713 -0.24096 0.96830 1.12425 1.37389 1.39333 1.46067 1.84133 1.90216 2.49346 3.03462 3.27905 3.31830 3.48292 3.55972 3.67568 3.73854 3.85701 4.00380 4.19044 4.24822 4.41496 4.48049 4.50255 4.56370 4.61286 4.73722 4.83278 4.88505 4.91651 4.96041 5.06051 5.11222 5.16572 5.27193 5.30102 5.42329 5.53823 5.83704 6.23589 6.25367 6.74285 7.11183 7.16343 7.86650 8.03084 9.22136 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.005394 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.978115 B = 5189.721165 C = 5943.802175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.251 5.251 3 N -0.074 5.074 4 N -0.300 5.300 5 C -0.002 4.002 6 C -0.075 4.075 7 C 0.609 3.391 8 O -0.564 6.564 9 N -0.586 5.586 10 C 0.065 3.935 11 C 0.174 3.826 12 H 0.089 0.911 13 N -0.739 5.739 14 C -0.220 4.220 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.980 5.980 18 Si 0.937 3.063 19 H -0.275 1.275 20 H -0.305 1.305 21 H -0.259 1.259 22 C -0.077 4.077 23 C -0.125 4.125 24 C -0.128 4.128 25 C 0.120 3.880 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.221 0.779 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.365 0.635 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 1.519 -14.322 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.049 5.049 3 N -0.055 5.055 4 N -0.162 5.162 5 C -0.163 4.163 6 C -0.210 4.210 7 C 0.396 3.604 8 O -0.444 6.444 9 N -0.317 5.317 10 C -0.060 4.060 11 C 0.064 3.936 12 H 0.106 0.894 13 N -0.381 5.381 14 C -0.351 4.351 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.631 5.631 18 Si 0.766 3.234 19 H -0.201 1.201 20 H -0.232 1.232 21 H -0.184 1.184 22 C -0.079 4.079 23 C -0.183 4.183 24 C -0.186 4.186 25 C -0.001 4.001 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.237 0.763 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.302 3.060 -14.324 20.471 hybrid contribution -0.464 -1.471 1.385 2.073 sum -14.765 1.589 -12.939 19.697 Atomic orbital electron populations 1.22876 0.69415 1.07544 1.07231 1.47944 1.10986 1.02781 1.43174 1.78168 0.96971 1.12071 1.18251 1.74892 1.09535 1.13603 1.18207 1.24893 0.98184 0.91471 1.01705 1.21865 0.91803 0.90778 1.16516 1.16239 0.84597 0.82324 0.77249 1.90746 1.16663 1.83720 1.53317 1.48037 1.08361 1.06514 1.68780 1.23523 0.78965 1.01962 1.01573 1.21494 0.97379 0.90008 0.84733 0.89360 1.42810 1.21888 1.61764 1.11659 1.19042 0.96728 1.24801 0.94489 0.91133 1.25319 0.99106 1.02627 0.97774 1.69854 1.29873 1.52122 1.11260 0.85687 0.80533 0.79828 0.77354 1.20109 1.23247 1.18353 1.22064 0.92698 0.95783 0.97310 1.21667 1.03176 1.02330 0.91102 1.21612 1.02960 0.93551 1.00448 1.22504 0.98512 0.77750 1.01370 0.86606 0.87192 0.85758 0.76263 0.88411 0.91664 0.80052 0.93609 0.91057 0.90745 0.92507 0.94164 0.90269 0.91770 0.92351 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 11.01 127.77 1.41 2.54 16 2 N -0.25 -6.45 3.79 -356.75 -1.35 -7.81 16 3 N -0.07 -2.17 13.14 37.02 0.49 -1.68 16 4 N -0.30 -9.47 12.35 -57.50 -0.71 -10.18 16 5 C 0.00 -0.06 10.59 84.18 0.89 0.84 16 6 C -0.08 -2.11 6.93 40.41 0.28 -1.83 16 7 C 0.61 17.51 7.83 86.61 0.68 18.19 16 8 O -0.56 -17.56 15.10 -4.08 -0.06 -17.62 16 9 N -0.59 -15.90 3.31 -815.48 -2.70 -18.60 16 10 C 0.06 1.78 4.49 86.73 0.39 2.17 16 11 C 0.17 5.17 2.86 46.18 0.13 5.30 16 12 H 0.09 2.60 8.03 -2.38 -0.02 2.58 16 13 N -0.74 -29.43 4.41 -317.34 -1.40 -30.83 16 14 C -0.22 -11.16 10.46 84.03 0.88 -10.28 16 15 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 16 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 17 N -0.98 -60.17 13.97 21.65 0.30 -59.87 16 18 Si 0.94 43.43 27.74 68.60 1.90 45.33 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 21 H -0.26 -10.94 6.52 99.48 0.65 -10.29 16 22 C -0.08 -1.77 0.83 -50.71 -0.04 -1.81 16 23 C -0.13 -2.17 8.59 71.98 0.62 -1.55 16 24 C -0.13 -2.94 8.22 71.98 0.59 -2.34 16 25 C 0.12 3.00 5.81 86.93 0.50 3.51 16 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 2.04 6.29 -2.39 -0.02 2.02 16 28 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.22 5.38 4.63 -2.91 -0.01 5.36 16 30 H 0.10 2.15 6.24 -2.39 -0.01 2.14 16 31 H 0.07 2.16 7.55 -2.39 -0.02 2.14 16 32 H 0.36 14.51 3.96 -92.71 -0.37 14.15 16 33 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.99 7.91 -2.39 -0.02 0.97 16 37 H 0.04 1.08 6.38 -2.39 -0.02 1.07 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.06 1.63 7.99 -2.39 -0.02 1.61 16 41 H 0.09 2.06 8.00 -2.39 -0.02 2.04 16 Total: -1.00 -68.87 329.84 3.89 -64.97 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.63 Total: 24.21 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.80 Total: 12.08 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -5.37 Total: -128.97 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.06 Total: -17.62 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.33 kcal Total: -68.87 3.89 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995746200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.072 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds