Wall clock time and date at job start Tue Mar 31 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34814 * 126.59186 * 2 1 4 4 C 1.36593 * 106.84080 * 180.02562 * 3 2 1 5 5 C 1.47522 * 125.77185 * 180.02562 * 4 3 2 6 6 O 1.21587 * 120.00112 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99780 * 179.97438 * 5 4 3 8 8 C 1.47029 * 125.65225 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.27196 * 181.02023 * 8 7 5 10 10 H 1.09000 * 110.71993 * 263.83142 * 9 8 7 11 11 N 1.46502 * 110.71538 * 140.73301 * 9 8 7 12 12 C 1.36938 * 119.99960 * 86.45759 * 11 9 8 13 13 H 1.08001 * 120.00034 * 359.97438 * 12 11 9 14 14 C 1.38812 * 119.99984 * 179.97438 * 12 11 9 15 15 N 1.31618 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99718 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99693 * 16 14 12 18 18 H 1.48508 * 109.46823 * 209.99952 * 16 14 12 19 19 H 1.48500 * 109.47257 * 329.99241 * 16 14 12 20 20 C 1.55157 * 102.94059 * 22.19222 * 9 8 7 21 21 C 1.53004 * 111.00207 * 82.57344 * 20 9 8 22 22 C 1.52997 * 111.00285 * 206.37956 * 20 9 8 23 23 C 1.47426 * 125.64660 * 179.71205 * 7 5 4 24 24 N 1.34400 * 108.45813 * 0.02562 * 4 3 2 25 25 N 1.28764 * 109.52547 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.47394 * 90.00347 * 1 2 3 27 27 H 1.09004 * 109.47144 * 209.99990 * 1 2 3 28 28 H 1.09008 * 109.47561 * 329.99514 * 1 2 3 29 29 H 1.08001 * 126.58234 * 359.77560 * 3 2 1 30 30 H 1.08994 * 109.88071 * 300.44175 * 8 7 5 31 31 H 1.09007 * 109.87974 * 61.45059 * 8 7 5 32 32 H 0.96998 * 119.99601 * 266.45091 * 11 9 8 33 33 H 0.97004 * 119.99617 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.47643 * 59.99564 * 21 20 9 35 35 H 1.08999 * 109.47108 * 179.97438 * 21 20 9 36 36 H 1.09005 * 109.46948 * 299.99579 * 21 20 9 37 37 H 1.09000 * 109.46735 * 60.00612 * 22 20 9 38 38 H 1.09003 * 109.47182 * 180.02562 * 22 20 9 39 39 H 1.08996 * 109.47817 * 300.00612 * 22 20 9 40 40 H 1.09006 * 110.37121 * 274.74507 * 23 7 5 41 41 H 1.08995 * 110.36871 * 37.07046 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0006 5 6 4.7703 1.4559 -0.0003 6 8 4.6754 2.6681 0.0001 7 7 5.9865 0.8752 -0.0004 8 6 6.2450 -0.5722 -0.0014 9 6 7.7760 -0.7642 0.0251 10 1 8.1630 -0.9170 -0.9824 11 7 8.1428 -1.8847 0.8947 12 6 8.1666 -3.1596 0.3955 13 1 7.9146 -3.3392 -0.6392 14 6 8.5147 -4.2212 1.2194 15 7 8.8223 -4.0023 2.4802 16 14 8.5478 -5.9602 0.5381 17 1 9.9006 -6.2562 0.0021 18 1 8.2231 -6.9225 1.6217 19 1 7.5457 -6.0845 -0.5507 20 6 8.2847 0.5796 0.6106 21 6 8.2006 0.5790 2.1383 22 6 9.7109 0.8767 0.1430 23 6 7.2780 1.5860 -0.0061 24 7 3.5238 -0.7228 -0.0015 25 7 2.3008 -1.1257 -0.0010 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.9560 2.1162 -0.0034 30 1 5.7987 -1.0290 0.8819 31 1 5.8281 -1.0226 -0.9023 32 1 8.3689 -1.7234 1.8241 33 1 9.0652 -4.7442 3.0561 34 1 8.8138 -0.2298 2.5357 35 1 8.5636 1.5322 2.5225 36 1 7.1647 0.4339 2.4451 37 1 9.7307 0.9397 -0.9450 38 1 10.0428 1.8238 0.5683 39 1 10.3752 0.0780 0.4728 40 1 7.5675 1.8387 -1.0262 41 1 7.2186 2.4858 0.6061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995774177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:04 Heat of formation + Delta-G solvation = 86.680345 kcal Electronic energy + Delta-G solvation = -24116.949312 eV Core-core repulsion = 20648.993022 eV Total energy + Delta-G solvation = -3467.956290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16352 -39.75214 -37.76595 -34.77474 -33.99757 -33.00920 -30.95593 -30.69352 -28.21826 -27.41960 -26.92527 -26.22540 -23.91047 -23.05460 -22.21204 -21.17210 -19.54214 -18.62630 -17.34767 -17.12847 -16.35803 -16.17353 -15.68140 -15.27229 -14.62992 -14.49588 -13.99553 -13.91417 -13.65923 -13.48829 -13.27751 -12.93840 -12.61991 -12.37478 -12.20338 -11.94519 -11.93448 -11.49489 -11.26965 -10.97852 -10.94912 -10.82109 -10.49749 -10.43420 -10.35885 -10.13837 -9.95277 -9.73998 -9.55448 -9.29251 -8.88482 -8.20340 -6.97135 -5.75258 -3.04303 1.10442 1.84406 1.98198 3.24245 3.46876 3.47157 3.52710 3.54316 4.20224 4.26428 4.59905 4.66343 4.68255 4.87589 4.96106 5.02992 5.18802 5.26916 5.31808 5.59734 5.65248 5.73862 5.89510 5.89756 5.93675 6.06968 6.10861 6.23672 6.25020 6.35720 6.44265 6.48978 6.66798 6.72485 6.75596 6.83711 7.06274 7.74261 7.82572 7.98300 8.37269 8.43662 9.55550 10.10122 10.45330 11.47242 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.005296 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.333564 B = 5286.237706 C = 7010.966204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.369 5.369 3 C 0.086 3.914 4 C -0.094 4.094 5 C 0.613 3.387 6 O -0.557 6.557 7 N -0.594 5.594 8 C 0.083 3.917 9 C 0.178 3.822 10 H 0.064 0.936 11 N -0.710 5.710 12 C -0.241 4.241 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.932 5.932 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.281 1.281 20 C -0.087 4.087 21 C -0.132 4.132 22 C -0.128 4.128 23 C 0.119 3.881 24 N -0.186 5.186 25 N -0.067 5.067 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.203 0.797 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 12.706 -4.677 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.154 5.154 3 C -0.071 4.071 4 C -0.233 4.233 5 C 0.399 3.601 6 O -0.436 6.436 7 N -0.325 5.325 8 C -0.042 4.042 9 C 0.066 3.934 10 H 0.082 0.918 11 N -0.353 5.353 12 C -0.372 4.372 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.580 5.580 16 Si 0.737 3.263 17 H -0.218 1.218 18 H -0.219 1.219 19 H -0.207 1.207 20 C -0.088 4.088 21 C -0.189 4.189 22 C -0.186 4.186 23 C -0.004 4.004 24 N -0.059 5.059 25 N -0.048 5.048 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.220 0.780 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.880 11.631 -4.750 17.993 hybrid contribution -0.391 -0.025 -0.031 0.393 sum -13.270 11.606 -4.781 18.267 Atomic orbital electron populations 1.22144 0.72880 1.05628 1.04553 1.50433 1.09023 1.05895 1.50068 1.23281 0.90208 0.94827 0.98775 1.21458 0.94385 0.90536 1.16929 1.16379 0.80979 0.85751 0.76956 1.90756 1.86432 1.13016 1.53437 1.48278 1.04479 1.09704 1.70039 1.23397 1.00526 0.77573 1.02721 1.21265 0.90049 0.87074 0.95016 0.91788 1.42505 1.80439 1.01664 1.10646 1.19261 1.38863 0.83789 0.95277 0.91042 1.24712 1.02162 0.97915 0.95740 1.69656 1.52776 1.30726 1.04863 0.86207 0.77613 0.84778 0.77714 1.21772 1.21850 1.20659 1.22027 0.94592 0.95784 0.96423 1.21642 1.02273 1.01403 0.93603 1.21643 0.95063 1.01375 1.00522 1.22393 0.81820 0.95585 1.00553 1.74923 1.12063 1.10100 1.08843 1.82110 0.93699 1.06274 1.22711 0.89399 0.88136 0.88604 0.78044 0.90099 0.91808 0.77382 0.93505 0.90875 0.93338 0.92756 0.92815 0.93131 0.91309 0.91418 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.51 59.84 0.69 1.14 16 2 N -0.37 -4.06 4.03 -67.85 -0.27 -4.33 16 3 C 0.09 1.00 11.31 -16.84 -0.19 0.81 16 4 C -0.09 -1.49 6.85 -83.55 -0.57 -2.07 16 5 C 0.61 10.68 7.85 -12.48 -0.10 10.58 16 6 O -0.56 -10.29 17.12 5.29 0.09 -10.20 16 7 N -0.59 -10.36 3.31 -171.60 -0.57 -10.93 16 8 C 0.08 1.61 4.95 -3.06 -0.02 1.59 16 9 C 0.18 3.51 2.84 -66.09 -0.19 3.32 16 10 H 0.06 1.27 8.02 -51.93 -0.42 0.85 16 11 N -0.71 -17.23 5.08 -51.65 -0.26 -17.49 16 12 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 13 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 14 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.09 -1.42 0.87 -152.24 -0.13 -1.56 16 21 C -0.13 -2.23 7.95 37.16 0.30 -1.93 16 22 C -0.13 -1.86 8.68 37.16 0.32 -1.54 16 23 C 0.12 1.86 5.85 -2.41 -0.01 1.84 16 24 N -0.19 -3.29 9.77 32.85 0.32 -2.97 16 25 N -0.07 -1.06 13.79 60.35 0.83 -0.23 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.08 1.77 7.50 -51.93 -0.39 1.38 16 31 H 0.06 1.26 7.72 -51.92 -0.40 0.86 16 32 H 0.39 9.93 5.28 -40.82 -0.22 9.71 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.38 6.35 -51.93 -0.33 1.05 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 37 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 41 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -33.89 341.02 -5.09 -38.98 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.92 Total: 6.53 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.15 Total: 5.14 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.77 Total: -62.95 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.89 -5.09 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995774177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.656 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds