Wall clock time and date at job start Tue Mar 31 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34814 * 126.59186 * 2 1 4 4 C 1.36593 * 106.84080 * 180.02562 * 3 2 1 5 5 C 1.47522 * 125.77185 * 180.02562 * 4 3 2 6 6 O 1.21587 * 120.00112 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99780 * 179.97438 * 5 4 3 8 8 C 1.47029 * 125.65225 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.27196 * 181.02023 * 8 7 5 10 10 H 1.09000 * 110.71993 * 263.83142 * 9 8 7 11 11 N 1.46502 * 110.71538 * 140.73301 * 9 8 7 12 12 C 1.36938 * 119.99960 * 86.45759 * 11 9 8 13 13 H 1.08001 * 120.00034 * 359.97438 * 12 11 9 14 14 C 1.38812 * 119.99984 * 179.97438 * 12 11 9 15 15 N 1.31618 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99718 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47327 * 89.99693 * 16 14 12 18 18 H 1.48508 * 109.46823 * 209.99952 * 16 14 12 19 19 H 1.48500 * 109.47257 * 329.99241 * 16 14 12 20 20 C 1.55157 * 102.94059 * 22.19222 * 9 8 7 21 21 C 1.53004 * 111.00207 * 82.57344 * 20 9 8 22 22 C 1.52997 * 111.00285 * 206.37956 * 20 9 8 23 23 C 1.47426 * 125.64660 * 179.71205 * 7 5 4 24 24 N 1.34400 * 108.45813 * 0.02562 * 4 3 2 25 25 N 1.28764 * 109.52547 * 359.97438 * 24 4 3 26 26 H 1.09000 * 109.47394 * 90.00347 * 1 2 3 27 27 H 1.09004 * 109.47144 * 209.99990 * 1 2 3 28 28 H 1.09008 * 109.47561 * 329.99514 * 1 2 3 29 29 H 1.08001 * 126.58234 * 359.77560 * 3 2 1 30 30 H 1.08994 * 109.88071 * 300.44175 * 8 7 5 31 31 H 1.09007 * 109.87974 * 61.45059 * 8 7 5 32 32 H 0.96998 * 119.99601 * 266.45091 * 11 9 8 33 33 H 0.97004 * 119.99617 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.47643 * 59.99564 * 21 20 9 35 35 H 1.08999 * 109.47108 * 179.97438 * 21 20 9 36 36 H 1.09005 * 109.46948 * 299.99579 * 21 20 9 37 37 H 1.09000 * 109.46735 * 60.00612 * 22 20 9 38 38 H 1.09003 * 109.47182 * 180.02562 * 22 20 9 39 39 H 1.08996 * 109.47817 * 300.00612 * 22 20 9 40 40 H 1.09006 * 110.37121 * 274.74507 * 23 7 5 41 41 H 1.08995 * 110.36871 * 37.07046 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0006 5 6 4.7703 1.4559 -0.0003 6 8 4.6754 2.6681 0.0001 7 7 5.9865 0.8752 -0.0004 8 6 6.2450 -0.5722 -0.0014 9 6 7.7760 -0.7642 0.0251 10 1 8.1630 -0.9170 -0.9824 11 7 8.1428 -1.8847 0.8947 12 6 8.1666 -3.1596 0.3955 13 1 7.9146 -3.3392 -0.6392 14 6 8.5147 -4.2212 1.2194 15 7 8.8223 -4.0023 2.4802 16 14 8.5478 -5.9602 0.5381 17 1 9.9006 -6.2562 0.0021 18 1 8.2231 -6.9225 1.6217 19 1 7.5457 -6.0845 -0.5507 20 6 8.2847 0.5796 0.6106 21 6 8.2006 0.5790 2.1383 22 6 9.7109 0.8767 0.1430 23 6 7.2780 1.5860 -0.0061 24 7 3.5238 -0.7228 -0.0015 25 7 2.3008 -1.1257 -0.0010 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.9560 2.1162 -0.0034 30 1 5.7987 -1.0290 0.8819 31 1 5.8281 -1.0226 -0.9023 32 1 8.3689 -1.7234 1.8241 33 1 9.0652 -4.7442 3.0561 34 1 8.8138 -0.2298 2.5357 35 1 8.5636 1.5322 2.5225 36 1 7.1647 0.4339 2.4451 37 1 9.7307 0.9397 -0.9450 38 1 10.0428 1.8238 0.5683 39 1 10.3752 0.0780 0.4728 40 1 7.5675 1.8387 -1.0262 41 1 7.2186 2.4858 0.6061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995774177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:03 Heat of formation + Delta-G solvation = 62.115440 kcal Electronic energy + Delta-G solvation = -24118.014526 eV Core-core repulsion = 20648.993022 eV Total energy + Delta-G solvation = -3469.021504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.21312 -41.14641 -39.18063 -35.90553 -35.60122 -34.47129 -32.64468 -31.99808 -29.18862 -28.94003 -28.25844 -27.39437 -25.82349 -24.35540 -23.14863 -22.67684 -20.77410 -20.10350 -19.11880 -18.46637 -17.45251 -17.39019 -16.91657 -16.61362 -16.24324 -15.74884 -15.55666 -15.38556 -14.93664 -14.61986 -14.25007 -14.14590 -13.96608 -13.75726 -13.55863 -13.37585 -13.04618 -12.97426 -12.81467 -12.77932 -12.53117 -12.14673 -12.08374 -12.06202 -11.80576 -11.49479 -11.34536 -11.31436 -11.17832 -10.86902 -10.38448 -9.61322 -9.00042 -7.91214 -5.19210 0.15715 0.61696 1.21512 1.49248 1.50652 1.58815 1.95499 2.20113 2.59218 3.12524 3.38886 3.43064 3.59621 3.83093 3.84625 3.89851 3.96628 4.19576 4.33010 4.37360 4.45145 4.46706 4.50826 4.64961 4.68806 4.77853 4.83921 4.88433 5.00950 5.07492 5.12804 5.19065 5.29471 5.31600 5.46143 5.48395 5.55714 5.58536 6.30683 6.42926 6.83019 7.09506 7.38886 8.11843 8.36716 9.32143 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.005296 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.333564 B = 5286.237706 C = 7010.966204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.351 5.351 3 C 0.114 3.886 4 C -0.131 4.131 5 C 0.613 3.387 6 O -0.568 6.568 7 N -0.599 5.599 8 C 0.108 3.892 9 C 0.170 3.830 10 H 0.066 0.934 11 N -0.720 5.720 12 C -0.238 4.238 13 H 0.074 0.926 14 C -0.069 4.069 15 N -0.968 5.968 16 Si 0.967 3.033 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.273 1.273 20 C -0.078 4.078 21 C -0.125 4.125 22 C -0.123 4.123 23 C 0.122 3.878 24 N -0.227 5.227 25 N -0.103 5.103 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.245 0.755 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.381 0.619 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 14.719 -5.838 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.136 5.136 3 C -0.045 4.045 4 C -0.271 4.271 5 C 0.401 3.599 6 O -0.448 6.448 7 N -0.329 5.329 8 C -0.018 4.018 9 C 0.060 3.940 10 H 0.084 0.916 11 N -0.361 5.361 12 C -0.369 4.369 13 H 0.092 0.908 14 C -0.261 4.261 15 N -0.618 5.618 16 Si 0.796 3.204 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.199 1.199 20 C -0.079 4.079 21 C -0.182 4.182 22 C -0.180 4.180 23 C 0.000 4.000 24 N -0.100 5.100 25 N -0.084 5.084 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.349 13.654 -5.951 20.681 hybrid contribution -0.129 -0.529 0.305 0.625 sum -14.477 13.124 -5.645 20.340 Atomic orbital electron populations 1.22735 0.69223 1.07768 1.06659 1.50818 1.10809 1.04572 1.47385 1.23850 0.88630 0.96357 0.95676 1.21584 0.95538 0.90290 1.19726 1.16593 0.81265 0.85819 0.76247 1.90734 1.86654 1.13291 1.54144 1.48276 1.05471 1.08745 1.70452 1.22837 0.99483 0.78835 1.00677 1.21458 0.90399 0.87604 0.94577 0.91625 1.42612 1.80635 1.02061 1.10817 1.19606 1.36909 0.85131 0.95300 0.90768 1.25438 1.03132 1.01439 0.96132 1.69804 1.54724 1.31267 1.06018 0.85239 0.77761 0.80449 0.76929 1.21200 1.22512 1.19859 1.21985 0.96250 0.93804 0.95892 1.21566 1.00601 1.01946 0.94132 1.21607 0.92894 1.01909 1.01622 1.22495 0.80533 0.95198 1.01787 1.74886 1.13437 1.11403 1.10243 1.81985 0.93807 1.08298 1.24273 0.87208 0.87705 0.84841 0.73859 0.93255 0.92851 0.78377 0.94117 0.93375 0.90384 0.94680 0.91309 0.90365 0.93495 0.89454 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.51 127.77 1.47 1.96 16 2 N -0.35 -6.98 4.03 -368.59 -1.49 -8.46 16 3 C 0.11 2.36 11.31 83.85 0.95 3.31 16 4 C -0.13 -4.10 6.85 40.82 0.28 -3.83 16 5 C 0.61 20.90 7.85 86.69 0.68 21.58 16 6 O -0.57 -19.94 17.12 -3.99 -0.07 -20.01 16 7 N -0.60 -20.68 3.31 -815.09 -2.70 -23.38 16 8 C 0.11 4.28 4.95 86.73 0.43 4.71 16 9 C 0.17 6.80 2.84 46.18 0.13 6.93 16 10 H 0.07 2.60 8.02 -2.39 -0.02 2.58 16 11 N -0.72 -36.01 5.08 -317.32 -1.61 -37.63 16 12 C -0.24 -13.20 9.98 84.03 0.84 -12.36 16 13 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 14 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 15 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 16 Si 0.97 46.91 29.55 68.60 2.03 48.93 16 17 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 18 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 C -0.08 -2.49 0.87 -50.71 -0.04 -2.54 16 21 C -0.12 -4.22 7.95 71.98 0.57 -3.65 16 22 C -0.12 -3.33 8.68 71.98 0.62 -2.71 16 23 C 0.12 3.58 5.85 86.93 0.51 4.08 16 24 N -0.23 -8.23 9.77 -50.00 -0.49 -8.72 16 25 N -0.10 -3.25 13.79 37.02 0.51 -2.74 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.13 -0.05 8.14 -2.38 -0.02 -0.07 16 29 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.05 2.27 7.50 -2.39 -0.02 2.26 16 31 H 0.05 2.19 7.72 -2.38 -0.02 2.18 16 32 H 0.38 20.26 5.28 -92.71 -0.49 19.77 16 33 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.05 1.87 6.35 -2.39 -0.02 1.85 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 1.29 7.91 -2.38 -0.02 1.27 16 37 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 2.26 7.99 -2.38 -0.02 2.24 16 41 H 0.09 2.38 7.95 -2.39 -0.02 2.36 16 Total: -1.00 -76.58 341.02 3.92 -72.66 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.55 Total: 24.43 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.91 Total: 13.98 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -5.49 Total: -139.98 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.07 Total: -20.01 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.58 3.92 -72.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995774177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.771 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds