Wall clock time and date at job start Tue Mar 31 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34814 * 126.59661 * 2 1 4 4 C 1.36587 * 106.83837 * 179.74251 * 3 2 1 5 5 C 1.47527 * 125.76938 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99886 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.47021 * 125.65111 * 0.02562 * 7 5 4 9 9 C 1.54328 * 107.27290 * 181.02409 * 8 7 5 10 10 H 1.08995 * 110.71678 * 140.56021 * 9 8 7 11 11 N 1.46507 * 110.71751 * 263.83245 * 9 8 7 12 12 C 1.36941 * 119.99772 * 273.54365 * 11 9 8 13 13 H 1.07993 * 120.00107 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99602 * 180.02562 * 12 11 9 15 15 N 1.31620 * 119.99346 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00088 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47152 * 90.00538 * 16 14 12 18 18 H 1.48501 * 109.47289 * 210.00004 * 16 14 12 19 19 H 1.48499 * 109.47601 * 330.00172 * 16 14 12 20 20 C 1.55155 * 102.94134 * 22.19214 * 9 8 7 21 21 C 1.53000 * 111.00216 * 82.57572 * 20 9 8 22 22 C 1.53000 * 111.00367 * 206.38473 * 20 9 8 23 23 C 1.47427 * 125.64800 * 179.71757 * 7 5 4 24 24 N 1.34399 * 108.46491 * 359.97438 * 4 3 2 25 25 N 1.28767 * 109.52059 * 0.02562 * 24 4 3 26 26 H 1.08997 * 109.47635 * 89.99334 * 1 2 3 27 27 H 1.09002 * 109.47377 * 210.00079 * 1 2 3 28 28 H 1.09006 * 109.46788 * 329.99538 * 1 2 3 29 29 H 1.07995 * 126.57748 * 359.73893 * 3 2 1 30 30 H 1.08998 * 109.88468 * 300.44480 * 8 7 5 31 31 H 1.09002 * 109.88116 * 61.45492 * 8 7 5 32 32 H 0.96995 * 119.99927 * 93.54700 * 11 9 8 33 33 H 0.97004 * 119.99377 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47189 * 59.99630 * 21 20 9 35 35 H 1.09000 * 109.47331 * 179.97438 * 21 20 9 36 36 H 1.09007 * 109.47132 * 299.99729 * 21 20 9 37 37 H 1.08996 * 109.47052 * 60.00425 * 22 20 9 38 38 H 1.08998 * 109.46690 * 180.02562 * 22 20 9 39 39 H 1.08998 * 109.47318 * 300.00194 * 22 20 9 40 40 H 1.09008 * 110.36545 * 274.74505 * 23 7 5 41 41 H 1.09003 * 110.36535 * 37.06715 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6206 0.0059 5 6 4.7704 1.4557 0.0075 6 8 4.6755 2.6679 0.0029 7 7 5.9865 0.8749 0.0140 8 6 6.2449 -0.5725 0.0195 9 6 7.7759 -0.7645 0.0524 10 1 8.0465 -1.5937 0.7059 11 7 8.3010 -0.9749 -1.2991 12 6 8.3294 -2.2353 -1.8340 13 1 7.9644 -3.0739 -1.2598 14 6 8.8275 -2.4347 -3.1143 15 7 8.8543 -3.6460 -3.6285 16 14 9.4581 -0.9840 -4.1076 17 1 10.9069 -0.7945 -3.8420 18 1 9.2504 -1.2469 -5.5543 19 1 8.7186 0.2429 -3.7163 20 6 8.2825 0.5815 0.6346 21 6 8.1927 0.5866 2.1620 22 6 9.7104 0.8767 0.1712 23 6 7.2782 1.5856 0.0104 24 7 3.5238 -0.7230 0.0099 25 7 2.3008 -1.1258 0.0064 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9561 2.1161 -0.0040 30 1 5.7954 -1.0260 0.9028 31 1 5.8314 -1.0262 -0.8812 32 1 8.6285 -0.2216 -1.8149 33 1 9.2020 -3.7853 -4.5233 34 1 8.8044 -0.2207 2.5646 35 1 8.5544 1.5412 2.5441 36 1 7.1557 0.4428 2.4656 37 1 9.7343 0.9357 -0.9169 38 1 10.0407 1.8254 0.5941 39 1 10.3734 0.0792 0.5065 40 1 7.5714 1.8345 -1.0095 41 1 7.2164 2.4877 0.6192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995774183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:07 Heat of formation + Delta-G solvation = 89.902196 kcal Electronic energy + Delta-G solvation = -24264.950856 eV Core-core repulsion = 20797.134276 eV Total energy + Delta-G solvation = -3467.816580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19196 -39.85755 -37.85377 -34.80111 -33.95568 -33.15259 -31.03296 -30.94806 -28.23752 -28.17916 -26.85207 -26.28439 -23.83100 -22.83450 -22.24115 -21.23131 -19.58019 -18.99616 -17.52376 -17.35013 -16.37928 -16.17846 -15.69974 -15.22040 -14.66478 -14.63099 -14.33375 -13.84018 -13.77274 -13.53237 -13.29494 -12.83194 -12.74154 -12.43295 -12.29218 -12.05592 -11.96788 -11.69452 -11.60200 -11.29728 -11.06659 -10.94779 -10.57134 -10.48875 -10.41937 -10.23242 -9.96239 -9.81681 -9.53550 -9.31692 -8.94298 -8.23617 -7.28144 -5.75847 -3.11859 1.08109 1.81462 1.95534 3.22319 3.38163 3.40792 3.45717 3.46482 4.17888 4.23655 4.58278 4.59904 4.67134 4.79417 4.93529 4.96895 5.05068 5.13101 5.28383 5.37107 5.56098 5.64106 5.67234 5.79301 5.86481 5.90064 6.04771 6.15238 6.17311 6.22368 6.25476 6.30975 6.40955 6.60188 6.63050 6.75643 6.87533 7.79543 7.94527 8.00785 8.35540 8.43153 9.20692 9.92931 10.11750 11.42284 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.005274 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.254048 B = 5308.102140 C = 6330.361985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.369 5.369 3 C 0.087 3.913 4 C -0.092 4.092 5 C 0.613 3.387 6 O -0.557 6.557 7 N -0.590 5.590 8 C 0.082 3.918 9 C 0.182 3.818 10 H 0.079 0.921 11 N -0.738 5.738 12 C -0.243 4.243 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.931 5.931 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.127 4.127 23 C 0.120 3.880 24 N -0.188 5.188 25 N -0.068 5.068 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.363 0.637 33 H 0.259 0.741 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 11.312 11.036 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.153 5.153 3 C -0.070 4.070 4 C -0.231 4.231 5 C 0.400 3.600 6 O -0.436 6.436 7 N -0.321 5.321 8 C -0.043 4.043 9 C 0.071 3.929 10 H 0.097 0.903 11 N -0.380 5.380 12 C -0.373 4.373 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.579 5.579 16 Si 0.708 3.292 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.204 1.204 20 C -0.094 4.094 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.002 4.002 24 N -0.062 5.062 25 N -0.048 5.048 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.220 0.780 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.197 0.803 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.267 10.162 10.966 19.988 hybrid contribution 0.008 1.936 -1.051 2.203 sum -13.259 12.098 9.915 20.505 Atomic orbital electron populations 1.22150 0.72826 1.05553 1.04680 1.50410 1.09030 1.05860 1.50049 1.23281 0.90189 0.94847 0.98698 1.21431 0.94369 0.90501 1.16843 1.16358 0.80926 0.85775 0.76977 1.90763 1.86400 1.13018 1.53383 1.48196 1.04463 1.09421 1.70019 1.23270 0.99826 0.78476 1.02725 1.21260 0.89459 0.94321 0.87867 0.90287 1.42812 1.75163 1.06970 1.13055 1.19072 1.35137 0.84774 0.98318 0.88887 1.24627 1.01162 0.95828 0.97074 1.69698 1.51943 1.19415 1.16815 0.86657 0.79098 0.83148 0.80284 1.20918 1.21769 1.20400 1.22098 0.95196 0.96433 0.95682 1.21661 1.01838 1.01620 0.93494 1.21594 0.94422 1.00931 1.01491 1.22363 0.81858 0.95245 1.00766 1.74870 1.12138 1.10167 1.09022 1.82081 0.93681 1.06326 1.22746 0.89324 0.88140 0.88605 0.78036 0.91671 0.89586 0.80304 0.93073 0.92048 0.92744 0.92645 0.92290 0.93177 0.91550 0.91425 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.51 59.85 0.69 1.12 16 2 N -0.37 -3.95 4.03 -67.86 -0.27 -4.22 16 3 C 0.09 1.00 11.31 -16.84 -0.19 0.81 16 4 C -0.09 -1.45 6.85 -83.55 -0.57 -2.02 16 5 C 0.61 10.76 7.85 -12.47 -0.10 10.67 16 6 O -0.56 -10.45 17.12 5.28 0.09 -10.36 16 7 N -0.59 -10.38 3.31 -171.60 -0.57 -10.95 16 8 C 0.08 1.52 4.94 -3.06 -0.02 1.51 16 9 C 0.18 3.41 2.86 -66.09 -0.19 3.22 16 10 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 11 N -0.74 -16.86 4.42 -51.65 -0.23 -17.09 16 12 C -0.24 -6.69 10.46 -15.06 -0.16 -6.84 16 13 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 14 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 15 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 16 Si 0.88 22.09 27.73 -169.99 -4.71 17.38 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 20 C -0.09 -1.41 0.83 -152.24 -0.13 -1.54 16 21 C -0.13 -1.64 8.58 37.16 0.32 -1.32 16 22 C -0.13 -1.87 8.22 37.16 0.31 -1.56 16 23 C 0.12 1.95 5.82 -2.41 -0.01 1.93 16 24 N -0.19 -3.22 9.77 32.84 0.32 -2.89 16 25 N -0.07 -1.03 13.79 60.35 0.83 -0.19 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.07 1.14 7.62 -51.93 -0.40 0.75 16 31 H 0.09 1.87 7.63 -51.93 -0.40 1.47 16 32 H 0.36 8.27 3.96 -40.82 -0.16 8.11 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 37 H 0.06 0.97 6.38 -51.93 -0.33 0.64 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.17 7.99 -51.92 -0.41 0.75 16 41 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -35.07 338.50 -4.72 -39.79 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.91 Total: 5.63 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.15 Total: 6.13 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.86 Total: -63.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.07 -4.72 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995774183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.695 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds