Wall clock time and date at job start Tue Mar 31 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.91408 * 2 1 4 4 C 1.54907 * 111.00131 * 123.90238 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21276 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47300 * 180.02562 * 8 6 5 10 10 N 1.28600 * 124.61318 * 269.69995 * 9 8 6 11 11 C 1.31380 * 108.71815 * 179.82708 * 10 9 8 12 12 C 1.39675 * 105.90039 * 0.41194 * 11 10 9 13 13 N 1.28594 * 124.62409 * 89.99534 * 9 8 6 14 14 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 15 15 C 1.54330 * 107.26840 * 358.94103 * 14 5 4 16 16 H 1.08991 * 110.72004 * 219.44241 * 15 14 5 17 17 N 1.46499 * 110.71556 * 96.16892 * 15 14 5 18 18 C 1.36946 * 119.99920 * 86.45572 * 17 15 14 19 19 H 1.08000 * 119.99914 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00049 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00150 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00020 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47363 * 89.99791 * 22 20 18 24 24 H 1.48499 * 109.47301 * 209.99812 * 22 20 18 25 25 H 1.48496 * 109.47276 * 330.00116 * 22 20 18 26 26 H 1.08996 * 109.47442 * 297.55335 * 1 2 3 27 27 H 1.09002 * 109.47243 * 57.55100 * 1 2 3 28 28 H 1.09001 * 109.47331 * 177.55307 * 1 2 3 29 29 H 1.09004 * 109.46972 * 182.44575 * 3 2 1 30 30 H 1.08998 * 109.47042 * 302.44208 * 3 2 1 31 31 H 1.08993 * 109.47294 * 62.44945 * 3 2 1 32 32 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 33 33 H 1.08997 * 110.45914 * 199.94937 * 4 2 1 34 34 H 1.09008 * 109.46861 * 300.00115 * 8 6 5 35 35 H 1.08997 * 109.46822 * 59.99853 * 8 6 5 36 36 H 1.08000 * 127.05360 * 180.16309 * 11 10 9 37 37 H 1.07997 * 127.05584 * 179.76374 * 12 11 10 38 38 H 1.08998 * 109.88351 * 118.35702 * 14 5 4 39 39 H 1.08998 * 109.88379 * 239.52492 * 14 5 4 40 40 H 0.96998 * 120.00239 * 266.45268 * 17 15 14 41 41 H 0.96997 * 120.00275 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2829 1.5941 7 8 1.9417 -3.1237 2.7963 8 6 1.8790 -4.6737 1.0178 9 7 1.8133 -5.6510 2.1071 10 7 2.8371 -6.1994 2.6592 11 6 2.4214 -7.0188 3.5983 12 6 1.0267 -6.9437 3.5818 13 7 0.7239 -6.0814 2.6379 14 6 2.0285 -2.2647 -0.6960 15 6 2.0861 -0.8079 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4666 -0.4157 -1.4961 18 6 4.0066 -0.6806 -2.7265 19 1 3.4148 -1.1791 -3.4799 20 6 5.3145 -0.3085 -3.0051 21 7 5.8333 -0.5627 -4.1877 22 14 6.3384 0.5531 -1.7017 23 1 7.0618 -0.4593 -0.8912 24 1 7.3192 1.4542 -2.3583 25 1 5.4482 1.3493 -0.8193 26 1 -0.3634 0.4753 0.9111 27 1 -0.3634 0.5514 -0.8672 28 1 -0.3634 -1.0267 -0.0439 29 1 3.1650 1.4020 -0.0439 30 1 1.6909 1.9653 -0.8673 31 1 1.7619 1.9382 0.9111 32 1 1.4672 -0.6461 2.0836 33 1 3.1179 -0.5239 1.4043 34 1 0.9898 -4.7653 0.3938 35 1 2.7672 -4.8608 0.4144 36 1 3.0325 -7.6288 4.2470 37 1 0.3384 -7.4835 4.2151 38 1 2.9063 -2.8117 -1.0400 39 1 1.1218 -2.7480 -1.0599 40 1 3.9983 0.0318 -0.8193 41 1 6.7474 -0.3030 -4.3824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995862914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:39 Heat of formation + Delta-G solvation = 103.068546 kcal Electronic energy + Delta-G solvation = -24097.425031 eV Core-core repulsion = 20630.179387 eV Total energy + Delta-G solvation = -3467.245644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.56531 -40.27826 -38.24027 -34.23429 -33.87128 -33.29184 -32.43418 -31.19809 -28.89428 -28.42808 -26.98598 -26.00929 -23.80942 -22.91936 -22.09662 -21.45251 -19.50143 -19.14403 -17.80910 -17.54936 -17.15843 -16.18978 -15.97963 -15.36133 -14.95124 -14.76648 -14.52705 -14.30944 -13.98517 -13.88414 -13.19536 -12.89816 -12.61014 -12.50546 -12.30654 -12.19677 -11.95082 -11.72900 -11.67472 -11.36993 -11.06312 -10.81991 -10.73453 -10.63491 -10.38480 -10.34591 -10.27109 -10.03377 -9.68697 -9.33562 -9.11415 -8.54491 -7.47104 -5.91846 -3.29724 1.70192 2.10517 2.46185 2.49508 3.08715 3.26464 3.30512 3.37371 4.11279 4.26132 4.45837 4.66477 4.76024 4.81478 4.84157 4.95737 5.03048 5.16327 5.27488 5.38441 5.42987 5.52164 5.69288 5.73311 5.84012 5.90896 5.94294 6.00890 6.05460 6.09127 6.12543 6.15284 6.29160 6.37059 6.53038 6.57656 6.61261 7.51460 7.81824 8.03847 8.26748 8.29851 9.03239 9.75824 9.93614 11.25654 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.004460 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.919739 B = 6277.164813 C = 7117.328116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.130 4.130 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.517 3.483 7 O -0.536 6.536 8 C 0.127 3.873 9 N -0.141 5.141 10 N -0.279 5.279 11 C -0.028 4.028 12 C -0.029 4.029 13 N -0.282 5.282 14 C 0.062 3.938 15 C 0.186 3.814 16 H 0.082 0.918 17 N -0.737 5.737 18 C -0.254 4.254 19 H 0.093 0.907 20 C 0.013 3.987 21 N -0.927 5.927 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.364 0.636 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -6.594 11.180 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.188 4.188 4 C -0.001 4.001 5 N -0.334 5.334 6 C 0.302 3.698 7 O -0.413 6.413 8 C 0.003 3.997 9 N -0.041 5.041 10 N -0.119 5.119 11 C -0.211 4.211 12 C -0.212 4.212 13 N -0.123 5.123 14 C -0.063 4.063 15 C 0.075 3.925 16 H 0.100 0.900 17 N -0.379 5.379 18 C -0.383 4.383 19 H 0.111 0.889 20 C -0.183 4.183 21 N -0.574 5.574 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.202 1.202 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.214 0.786 37 H 0.214 0.786 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.199 0.801 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.196 -5.704 10.539 16.400 hybrid contribution 0.952 -0.126 1.562 1.833 sum -10.244 -5.830 12.100 16.892 Atomic orbital electron populations 1.21677 0.93382 1.01808 1.01829 1.22056 0.95872 0.95952 0.95403 1.21644 1.01888 0.93854 1.01392 1.22311 1.01059 0.79400 0.97353 1.48339 1.71264 1.05854 1.07984 1.19966 0.77724 0.85474 0.86640 1.90755 1.50461 1.85753 1.14299 1.21695 1.08208 0.84271 0.85567 1.47356 0.99578 1.30176 1.26958 1.74086 1.17470 1.10062 1.10324 1.24775 0.94737 1.01728 0.99887 1.24754 0.96013 1.00640 0.99746 1.74021 1.14431 1.12718 1.11124 1.23418 1.01673 1.03332 0.77917 1.21145 0.87740 0.88858 0.94788 0.90041 1.42835 1.09575 1.70930 1.14578 1.19029 0.96313 1.33395 0.89597 0.88889 1.24643 0.96943 1.00485 0.96271 1.69682 1.15320 1.51777 1.20598 0.86675 0.80785 0.79889 0.81798 1.20989 1.21529 1.20217 0.92697 0.91972 0.92634 0.91733 0.91654 0.93166 0.90788 0.91424 0.84598 0.84285 0.78625 0.78636 0.89663 0.91795 0.80114 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.61 37.16 0.32 -1.15 16 2 C -0.09 -1.25 0.83 -152.36 -0.13 -1.38 16 3 C -0.13 -1.80 8.35 37.16 0.31 -1.49 16 4 C 0.12 1.80 5.81 -2.53 -0.01 1.78 16 5 N -0.60 -8.93 3.31 -170.52 -0.57 -9.50 16 6 C 0.52 8.16 7.92 -10.98 -0.09 8.07 16 7 O -0.54 -10.52 16.69 5.56 0.09 -10.43 16 8 C 0.13 1.62 6.21 -5.20 -0.03 1.58 16 9 N -0.14 -2.08 3.44 -11.66 -0.04 -2.12 16 10 N -0.28 -4.20 12.05 30.67 0.37 -3.83 16 11 C -0.03 -0.33 12.20 -17.21 -0.21 -0.54 16 12 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 13 N -0.28 -4.05 12.05 30.67 0.37 -3.68 16 14 C 0.06 0.89 5.84 -3.06 -0.02 0.87 16 15 C 0.19 3.00 2.87 -66.09 -0.19 2.81 16 16 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 17 N -0.74 -15.25 4.39 -51.65 -0.23 -15.48 16 18 C -0.25 -6.43 10.46 -15.06 -0.16 -6.59 16 19 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 21 N -0.93 -27.51 13.97 55.49 0.78 -26.73 16 22 Si 0.88 20.98 27.74 -169.99 -4.71 16.27 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 29 H 0.06 1.04 6.17 -51.93 -0.32 0.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 33 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 34 H 0.14 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.09 1.36 8.04 -51.93 -0.42 0.94 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.36 7.66 3.88 -40.82 -0.16 7.50 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -34.09 340.55 -5.26 -39.36 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.95 Total: 7.29 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.51 Total: 3.71 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.68 Total: -61.33 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.09 -5.26 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995862914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.426 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds