Wall clock time and date at job start Tue Mar 31 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.91408 * 2 1 4 4 C 1.54907 * 111.00131 * 123.90238 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21276 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.46495 * 109.47300 * 180.02562 * 8 6 5 10 10 N 1.28600 * 124.61318 * 269.69995 * 9 8 6 11 11 C 1.31380 * 108.71815 * 179.82708 * 10 9 8 12 12 C 1.39675 * 105.90039 * 0.41194 * 11 10 9 13 13 N 1.28594 * 124.62409 * 89.99534 * 9 8 6 14 14 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 15 15 C 1.54330 * 107.26840 * 358.94103 * 14 5 4 16 16 H 1.08991 * 110.72004 * 219.44241 * 15 14 5 17 17 N 1.46499 * 110.71556 * 96.16892 * 15 14 5 18 18 C 1.36946 * 119.99920 * 86.45572 * 17 15 14 19 19 H 1.08000 * 119.99914 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00049 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00150 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00020 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47363 * 89.99791 * 22 20 18 24 24 H 1.48499 * 109.47301 * 209.99812 * 22 20 18 25 25 H 1.48496 * 109.47276 * 330.00116 * 22 20 18 26 26 H 1.08996 * 109.47442 * 297.55335 * 1 2 3 27 27 H 1.09002 * 109.47243 * 57.55100 * 1 2 3 28 28 H 1.09001 * 109.47331 * 177.55307 * 1 2 3 29 29 H 1.09004 * 109.46972 * 182.44575 * 3 2 1 30 30 H 1.08998 * 109.47042 * 302.44208 * 3 2 1 31 31 H 1.08993 * 109.47294 * 62.44945 * 3 2 1 32 32 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 33 33 H 1.08997 * 110.45914 * 199.94937 * 4 2 1 34 34 H 1.09008 * 109.46861 * 300.00115 * 8 6 5 35 35 H 1.08997 * 109.46822 * 59.99853 * 8 6 5 36 36 H 1.08000 * 127.05360 * 180.16309 * 11 10 9 37 37 H 1.07997 * 127.05584 * 179.76374 * 12 11 10 38 38 H 1.08998 * 109.88351 * 118.35702 * 14 5 4 39 39 H 1.08998 * 109.88379 * 239.52492 * 14 5 4 40 40 H 0.96998 * 120.00239 * 266.45268 * 17 15 14 41 41 H 0.96997 * 120.00275 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2829 1.5941 7 8 1.9417 -3.1237 2.7963 8 6 1.8790 -4.6737 1.0178 9 7 1.8133 -5.6510 2.1071 10 7 2.8371 -6.1994 2.6592 11 6 2.4214 -7.0188 3.5983 12 6 1.0267 -6.9437 3.5818 13 7 0.7239 -6.0814 2.6379 14 6 2.0285 -2.2647 -0.6960 15 6 2.0861 -0.8079 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4666 -0.4157 -1.4961 18 6 4.0066 -0.6806 -2.7265 19 1 3.4148 -1.1791 -3.4799 20 6 5.3145 -0.3085 -3.0051 21 7 5.8333 -0.5627 -4.1877 22 14 6.3384 0.5531 -1.7017 23 1 7.0618 -0.4593 -0.8912 24 1 7.3192 1.4542 -2.3583 25 1 5.4482 1.3493 -0.8193 26 1 -0.3634 0.4753 0.9111 27 1 -0.3634 0.5514 -0.8672 28 1 -0.3634 -1.0267 -0.0439 29 1 3.1650 1.4020 -0.0439 30 1 1.6909 1.9653 -0.8673 31 1 1.7619 1.9382 0.9111 32 1 1.4672 -0.6461 2.0836 33 1 3.1179 -0.5239 1.4043 34 1 0.9898 -4.7653 0.3938 35 1 2.7672 -4.8608 0.4144 36 1 3.0325 -7.6288 4.2470 37 1 0.3384 -7.4835 4.2151 38 1 2.9063 -2.8117 -1.0400 39 1 1.1218 -2.7480 -1.0599 40 1 3.9983 0.0318 -0.8193 41 1 6.7474 -0.3030 -4.3824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995862914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:37 Heat of formation + Delta-G solvation = 78.338284 kcal Electronic energy + Delta-G solvation = -24098.497415 eV Core-core repulsion = 20630.179387 eV Total energy + Delta-G solvation = -3468.318029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.50265 -41.50774 -39.51841 -35.88623 -35.00912 -34.45437 -33.40405 -33.03507 -29.94298 -29.74986 -28.10969 -27.11584 -25.48016 -23.82331 -23.30970 -22.71326 -20.72260 -20.46799 -19.43088 -18.71199 -18.23167 -17.41062 -17.12321 -16.69085 -16.19329 -15.99882 -15.92002 -15.30882 -15.24957 -15.06217 -14.66820 -14.40445 -13.79548 -13.75659 -13.51091 -13.46190 -13.23558 -12.92521 -12.84747 -12.73234 -12.57559 -12.18418 -11.96563 -11.92112 -11.80646 -11.58934 -11.50748 -11.35630 -11.30436 -11.00221 -10.29224 -9.79929 -9.33000 -8.01252 -5.33765 0.71481 1.18237 1.29324 1.35425 1.37778 1.44180 1.62106 1.95610 2.47196 3.13174 3.26732 3.29189 3.48059 3.58587 3.73662 3.91062 3.93681 3.98205 4.13671 4.22903 4.40373 4.53157 4.56663 4.57860 4.70544 4.84994 4.86773 4.94821 5.02420 5.05828 5.07132 5.14459 5.27651 5.34944 5.36310 5.48948 5.63547 5.81445 6.23138 6.31235 6.83100 7.08700 7.36116 7.84553 8.00967 9.19665 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.004460 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.919739 B = 6277.164813 C = 7117.328116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.515 3.485 7 O -0.579 6.579 8 C 0.127 3.873 9 N -0.159 5.159 10 N -0.320 5.320 11 C -0.025 4.025 12 C -0.022 4.022 13 N -0.310 5.310 14 C 0.070 3.930 15 C 0.174 3.826 16 H 0.088 0.912 17 N -0.741 5.741 18 C -0.220 4.220 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.979 5.979 22 Si 0.933 3.067 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.251 1.251 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.233 0.767 37 H 0.236 0.764 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.364 0.636 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 -7.108 12.843 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.187 4.187 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.302 3.698 7 O -0.459 6.459 8 C 0.004 3.996 9 N -0.058 5.058 10 N -0.160 5.160 11 C -0.208 4.208 12 C -0.206 4.206 13 N -0.150 5.150 14 C -0.055 4.055 15 C 0.065 3.935 16 H 0.106 0.894 17 N -0.384 5.384 18 C -0.350 4.350 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.630 5.630 22 Si 0.762 3.238 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.175 1.175 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.183 0.817 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.198 0.802 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.263 -6.206 12.221 19.073 hybrid contribution 1.458 -0.051 1.121 1.840 sum -11.805 -6.257 13.342 18.882 Atomic orbital electron populations 1.21652 0.90943 1.02522 1.03021 1.22006 0.97544 0.95230 0.93121 1.21638 1.00232 0.94180 1.02690 1.22339 1.00289 0.79743 0.98107 1.48378 1.70659 1.05862 1.08101 1.20492 0.76596 0.86567 0.86100 1.90724 1.52530 1.86486 1.16146 1.21839 1.10108 0.82178 0.85517 1.47487 0.99539 1.30974 1.27805 1.74050 1.18505 1.11556 1.11916 1.25499 0.95536 1.00749 0.98987 1.25507 0.96685 0.99488 0.98872 1.73985 1.14803 1.13883 1.12359 1.23266 1.02883 1.01789 0.77528 1.21434 0.85390 0.90408 0.96277 0.89443 1.42856 1.11479 1.71105 1.12916 1.19047 0.95514 1.30040 0.90448 0.90921 1.25267 0.98553 1.02740 0.97971 1.69831 1.15488 1.54744 1.22901 0.85761 0.79401 0.78856 0.79784 1.21694 1.22612 1.17528 0.91469 0.90872 0.92179 0.94176 0.91461 0.90915 0.90445 0.93097 0.81654 0.83274 0.75106 0.74748 0.91301 0.87985 0.80180 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.61 71.98 0.62 -1.76 16 2 C -0.08 -1.94 0.83 -50.79 -0.04 -1.98 16 3 C -0.13 -3.31 8.35 71.98 0.60 -2.71 16 4 C 0.12 3.32 5.81 86.86 0.50 3.83 16 5 N -0.60 -16.82 3.31 -811.80 -2.69 -19.51 16 6 C 0.52 15.73 7.92 87.66 0.69 16.42 16 7 O -0.58 -22.52 16.69 -3.02 -0.05 -22.57 16 8 C 0.13 3.07 6.21 85.63 0.53 3.60 16 9 N -0.16 -4.51 3.44 -190.81 -0.66 -5.16 16 10 N -0.32 -9.30 12.05 -56.87 -0.69 -9.98 16 11 C -0.02 -0.52 12.20 85.11 1.04 0.52 16 12 C -0.02 -0.45 12.20 85.11 1.04 0.59 16 13 N -0.31 -8.37 12.05 -56.86 -0.69 -9.05 16 14 C 0.07 1.86 5.84 86.73 0.51 2.36 16 15 C 0.17 5.29 2.87 46.18 0.13 5.42 16 16 H 0.09 2.60 8.03 -2.39 -0.02 2.59 16 17 N -0.74 -29.98 4.39 -317.33 -1.39 -31.37 16 18 C -0.22 -11.14 10.46 84.03 0.88 -10.26 16 19 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 20 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 21 N -0.98 -59.73 13.97 21.65 0.30 -59.43 16 22 Si 0.93 43.83 27.74 68.60 1.90 45.73 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.25 -10.54 6.52 99.48 0.65 -9.90 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.12 7.81 -2.39 -0.02 1.10 16 29 H 0.04 1.22 6.17 -2.38 -0.01 1.20 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.15 7.95 -2.39 -0.02 2.13 16 33 H 0.05 1.60 8.04 -2.39 -0.02 1.59 16 34 H 0.17 2.83 8.14 -2.38 -0.02 2.81 16 35 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.23 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.24 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 40 H 0.36 14.91 3.88 -92.71 -0.36 14.55 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -76.00 340.55 3.63 -72.37 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.62 Total: 25.43 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.97 Total: 13.54 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -5.81 Total: -134.51 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Total: -76.00 3.63 -72.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995862914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.711 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds