Wall clock time and date at job start Tue Mar 31 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28518 * 124.44876 * 2 1 4 4 C 1.31132 * 109.06442 * 180.02562 * 3 2 1 5 5 C 1.40920 * 105.77509 * 0.02562 * 4 3 2 6 6 C 1.47795 * 127.23889 * 180.02562 * 5 4 3 7 7 O 1.21559 * 120.00070 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00280 * 179.97438 * 6 5 4 9 9 C 1.47015 * 125.65037 * 0.02562 * 8 6 5 10 10 C 1.54322 * 107.27393 * 181.01995 * 9 8 6 11 11 H 1.09002 * 110.72357 * 263.82505 * 10 9 8 12 12 N 1.46506 * 110.71843 * 140.73088 * 10 9 8 13 13 C 1.36941 * 119.99850 * 86.45839 * 12 10 9 14 14 H 1.07998 * 119.99721 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00182 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00251 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46936 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46909 * 119.99607 * 17 15 13 20 20 H 1.48497 * 109.46977 * 239.99290 * 17 15 13 21 21 C 1.55153 * 102.94310 * 22.19353 * 10 9 8 22 22 C 1.53009 * 111.00340 * 82.56691 * 21 10 9 23 23 C 1.52994 * 111.00781 * 206.38343 * 21 10 9 24 24 C 1.47423 * 125.64859 * 179.71372 * 8 6 5 25 25 N 1.28597 * 124.44573 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47302 * 269.97733 * 1 2 3 27 27 H 1.09000 * 109.47114 * 29.97681 * 1 2 3 28 28 H 1.09001 * 109.47073 * 149.97509 * 1 2 3 29 29 H 1.07997 * 127.11113 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.88127 * 300.44030 * 9 8 6 31 31 H 1.09004 * 109.88104 * 61.45053 * 9 8 6 32 32 H 0.96989 * 120.00347 * 266.45806 * 12 10 9 33 33 H 0.96993 * 120.00377 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.46854 * 60.00664 * 22 21 10 35 35 H 1.09001 * 109.47002 * 179.97438 * 22 21 10 36 36 H 1.08998 * 109.47262 * 300.00401 * 22 21 10 37 37 H 1.08998 * 109.46762 * 59.99831 * 23 21 10 38 38 H 1.08994 * 109.47247 * 180.02562 * 23 21 10 39 39 H 1.09003 * 109.47397 * 300.00272 * 23 21 10 40 40 H 1.09003 * 110.36718 * 274.74700 * 24 8 6 41 41 H 1.09004 * 110.36858 * 37.06751 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6486 -1.5836 -0.0019 7 8 5.7663 -1.1056 -0.0018 8 7 4.4879 -2.9217 -0.0023 9 6 3.1997 -3.6301 -0.0030 10 6 3.5081 -5.1420 0.0229 11 1 3.4868 -5.5573 -0.9846 12 7 2.5644 -5.8486 0.8928 13 6 1.3641 -6.2792 0.3939 14 1 1.1129 -6.0976 -0.6406 15 6 0.4698 -6.9482 1.2182 16 7 0.7757 -7.1691 2.4791 17 14 -1.1680 -7.5351 0.5378 18 1 -1.2694 -7.1649 -0.8966 19 1 -1.2614 -9.0107 0.6765 20 1 -2.2753 -6.8959 1.2931 21 6 4.9442 -5.1937 0.6078 22 6 4.9173 -5.1146 2.1356 23 6 5.6822 -6.4495 0.1396 24 6 5.5749 -3.9176 -0.0087 25 7 2.1923 -1.0605 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3130 1.3694 -0.0011 30 1 2.6243 -3.3539 0.8806 31 1 2.6392 -3.3792 -0.9036 32 1 2.7899 -6.0113 1.8220 33 1 0.1509 -7.6369 3.0550 34 1 4.3477 -5.9547 2.5330 35 1 5.9367 -5.1534 2.5195 36 1 4.4483 -4.1798 2.4428 37 1 5.7478 -6.4478 -0.9484 38 1 6.6858 -6.4608 0.5645 39 1 5.1384 -7.3347 0.4694 40 1 5.9067 -4.1106 -1.0290 41 1 6.4086 -3.5732 0.6034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996404582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:10 Heat of formation + Delta-G solvation = 98.104325 kcal Electronic energy + Delta-G solvation = -24322.361966 eV Core-core repulsion = 20854.901057 eV Total energy + Delta-G solvation = -3467.460909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.60762 -39.88824 -37.85456 -34.17070 -33.82382 -33.24909 -32.38172 -30.80737 -28.30287 -27.50368 -26.98345 -26.39567 -24.03120 -23.42637 -22.08953 -21.22173 -19.42952 -18.68617 -17.25035 -17.20178 -16.99888 -16.63184 -15.74308 -15.36374 -14.75649 -14.60091 -14.05812 -13.91627 -13.67119 -13.13349 -13.11118 -12.95978 -12.68840 -12.44154 -12.21243 -12.02330 -11.79973 -11.52960 -11.26077 -11.04858 -10.95717 -10.87737 -10.57969 -10.46087 -10.39345 -10.20147 -10.04375 -9.81497 -9.65225 -9.43157 -8.99506 -8.29373 -7.07303 -5.85309 -3.14853 1.41321 1.96011 2.16352 3.17458 3.36917 3.41611 3.43406 3.45274 3.94781 4.50897 4.65417 4.88259 4.90071 4.98101 5.09746 5.15261 5.17752 5.20959 5.51841 5.60243 5.70740 5.78956 5.82296 5.85978 5.94133 6.00949 6.05727 6.16116 6.28749 6.38040 6.39952 6.49381 6.57356 6.63762 6.68177 6.76889 6.95977 7.63857 7.74467 8.10086 8.31939 8.34160 9.45242 10.00215 10.35485 11.37095 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.005947 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.581394 B = 4706.855210 C = 6585.686254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.146 5.146 3 N -0.297 5.297 4 C 0.031 3.969 5 C -0.043 4.043 6 C 0.618 3.382 7 O -0.545 6.545 8 N -0.595 5.595 9 C 0.083 3.917 10 C 0.179 3.821 11 H 0.065 0.935 12 N -0.711 5.711 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.009 4.009 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.292 1.292 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.129 4.129 24 C 0.119 3.881 25 N -0.231 5.231 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.206 0.794 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 10.843 -4.784 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.049 5.049 3 N -0.137 5.137 4 C -0.153 4.153 5 C -0.206 4.206 6 C 0.403 3.597 7 O -0.422 6.422 8 N -0.327 5.327 9 C -0.042 4.042 10 C 0.066 3.934 11 H 0.083 0.917 12 N -0.353 5.353 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.088 4.088 22 C -0.190 4.190 23 C -0.186 4.186 24 C -0.004 4.004 25 N -0.079 5.079 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.223 0.777 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.256 11.083 -4.863 12.534 hybrid contribution -0.263 -0.252 0.013 0.364 sum 2.993 10.831 -4.850 12.239 Atomic orbital electron populations 1.22260 0.69681 1.06159 1.05502 1.48119 1.09306 0.99326 1.48144 1.73955 1.03807 1.15857 1.20070 1.24769 0.94221 0.93630 1.02709 1.23025 0.91457 0.94523 1.11616 1.16259 0.85856 0.80376 0.77171 1.90771 1.23913 1.74939 1.52539 1.48307 1.10217 1.03963 1.70205 1.23362 0.83491 0.95047 1.02321 1.21256 0.87944 0.89109 0.95074 0.91728 1.42521 1.16587 1.65490 1.10682 1.19291 0.93188 1.29583 0.95250 0.91037 1.24729 0.98774 1.01308 0.95754 1.69661 1.36568 1.46767 1.04866 0.86145 0.83983 0.78251 0.77948 1.20529 1.21839 1.21920 1.22027 0.96675 0.93636 0.96436 1.21647 1.00970 1.02766 0.93573 1.21644 0.99252 0.97184 1.00549 1.22414 0.90028 0.87256 1.00678 1.74732 1.02988 1.14800 1.15377 0.88782 0.87807 0.87307 0.77735 0.90325 0.92051 0.77350 0.93464 0.90882 0.93232 0.92789 0.92786 0.93049 0.91307 0.91306 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.55 59.84 0.69 1.58 16 2 N -0.15 -1.98 4.35 -16.64 -0.07 -2.05 16 3 N -0.30 -4.10 12.01 30.89 0.37 -3.73 16 4 C 0.03 0.43 12.04 -16.84 -0.20 0.22 16 5 C -0.04 -0.70 7.03 -82.68 -0.58 -1.28 16 6 C 0.62 10.78 7.86 -12.35 -0.10 10.69 16 7 O -0.54 -10.28 17.21 5.31 0.09 -10.18 16 8 N -0.60 -10.06 3.31 -171.51 -0.57 -10.63 16 9 C 0.08 1.52 4.99 -3.07 -0.02 1.50 16 10 C 0.18 3.35 2.84 -66.10 -0.19 3.16 16 11 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 12 N -0.71 -16.47 5.08 -51.65 -0.26 -16.74 16 13 C -0.24 -6.28 9.98 -15.06 -0.15 -6.43 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 16 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 17 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.09 -1.36 0.87 -152.24 -0.13 -1.50 16 22 C -0.13 -2.16 7.95 37.16 0.30 -1.87 16 23 C -0.13 -1.80 8.68 37.15 0.32 -1.48 16 24 C 0.12 1.80 5.85 -2.41 -0.01 1.78 16 25 N -0.23 -3.70 9.73 33.42 0.33 -3.38 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.21 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 31 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 32 H 0.39 9.58 5.28 -40.82 -0.22 9.36 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.34 6.36 -51.93 -0.33 1.01 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 37 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.96 7.99 -51.93 -0.41 0.54 16 41 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -31.74 340.74 -5.37 -37.11 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.92 Total: 8.15 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.17 Total: 6.03 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.52 Total: -62.59 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.74 -5.37 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996404582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.211 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds