Wall clock time and date at job start Tue Mar 31 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28518 * 124.44876 * 2 1 4 4 C 1.31132 * 109.06442 * 180.02562 * 3 2 1 5 5 C 1.40920 * 105.77509 * 0.02562 * 4 3 2 6 6 C 1.47795 * 127.23889 * 180.02562 * 5 4 3 7 7 O 1.21559 * 120.00070 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00280 * 179.97438 * 6 5 4 9 9 C 1.47015 * 125.65037 * 0.02562 * 8 6 5 10 10 C 1.54322 * 107.27393 * 181.01995 * 9 8 6 11 11 H 1.09002 * 110.72357 * 263.82505 * 10 9 8 12 12 N 1.46506 * 110.71843 * 140.73088 * 10 9 8 13 13 C 1.36941 * 119.99850 * 86.45839 * 12 10 9 14 14 H 1.07998 * 119.99721 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00182 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00251 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46936 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46909 * 119.99607 * 17 15 13 20 20 H 1.48497 * 109.46977 * 239.99290 * 17 15 13 21 21 C 1.55153 * 102.94310 * 22.19353 * 10 9 8 22 22 C 1.53009 * 111.00340 * 82.56691 * 21 10 9 23 23 C 1.52994 * 111.00781 * 206.38343 * 21 10 9 24 24 C 1.47423 * 125.64859 * 179.71372 * 8 6 5 25 25 N 1.28597 * 124.44573 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47302 * 269.97733 * 1 2 3 27 27 H 1.09000 * 109.47114 * 29.97681 * 1 2 3 28 28 H 1.09001 * 109.47073 * 149.97509 * 1 2 3 29 29 H 1.07997 * 127.11113 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.88127 * 300.44030 * 9 8 6 31 31 H 1.09004 * 109.88104 * 61.45053 * 9 8 6 32 32 H 0.96989 * 120.00347 * 266.45806 * 12 10 9 33 33 H 0.96993 * 120.00377 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.46854 * 60.00664 * 22 21 10 35 35 H 1.09001 * 109.47002 * 179.97438 * 22 21 10 36 36 H 1.08998 * 109.47262 * 300.00401 * 22 21 10 37 37 H 1.08998 * 109.46762 * 59.99831 * 23 21 10 38 38 H 1.08994 * 109.47247 * 180.02562 * 23 21 10 39 39 H 1.09003 * 109.47397 * 300.00272 * 23 21 10 40 40 H 1.09003 * 110.36718 * 274.74700 * 24 8 6 41 41 H 1.09004 * 110.36858 * 37.06751 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6486 -1.5836 -0.0019 7 8 5.7663 -1.1056 -0.0018 8 7 4.4879 -2.9217 -0.0023 9 6 3.1997 -3.6301 -0.0030 10 6 3.5081 -5.1420 0.0229 11 1 3.4868 -5.5573 -0.9846 12 7 2.5644 -5.8486 0.8928 13 6 1.3641 -6.2792 0.3939 14 1 1.1129 -6.0976 -0.6406 15 6 0.4698 -6.9482 1.2182 16 7 0.7757 -7.1691 2.4791 17 14 -1.1680 -7.5351 0.5378 18 1 -1.2694 -7.1649 -0.8966 19 1 -1.2614 -9.0107 0.6765 20 1 -2.2753 -6.8959 1.2931 21 6 4.9442 -5.1937 0.6078 22 6 4.9173 -5.1146 2.1356 23 6 5.6822 -6.4495 0.1396 24 6 5.5749 -3.9176 -0.0087 25 7 2.1923 -1.0605 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3130 1.3694 -0.0011 30 1 2.6243 -3.3539 0.8806 31 1 2.6392 -3.3792 -0.9036 32 1 2.7899 -6.0113 1.8220 33 1 0.1509 -7.6369 3.0550 34 1 4.3477 -5.9547 2.5330 35 1 5.9367 -5.1534 2.5195 36 1 4.4483 -4.1798 2.4428 37 1 5.7478 -6.4478 -0.9484 38 1 6.6858 -6.4608 0.5645 39 1 5.1384 -7.3347 0.4694 40 1 5.9067 -4.1106 -1.0290 41 1 6.4086 -3.5732 0.6034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996404582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:10 Heat of formation + Delta-G solvation = 76.196362 kcal Electronic energy + Delta-G solvation = -24323.311967 eV Core-core repulsion = 20854.901057 eV Total energy + Delta-G solvation = -3468.410909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.70717 -41.26898 -39.26351 -35.88254 -34.95587 -34.54587 -33.57139 -32.63432 -29.38080 -29.06559 -28.27578 -27.55099 -25.83874 -24.70419 -23.22785 -22.63246 -20.72985 -20.10968 -19.12463 -18.29990 -18.08226 -17.93990 -17.10769 -16.81129 -16.31064 -15.76193 -15.68538 -15.45665 -14.97849 -14.60002 -14.26511 -13.98054 -13.77950 -13.72367 -13.53416 -13.41153 -13.02493 -12.92246 -12.86314 -12.78114 -12.54586 -12.11540 -12.07096 -12.00634 -11.84375 -11.58258 -11.48081 -11.39456 -11.22562 -10.89951 -10.50962 -9.67358 -9.01320 -7.91407 -5.19963 0.20387 0.86193 1.23353 1.49693 1.50968 1.60132 1.90580 2.11519 2.58582 2.84027 3.36960 3.42353 3.70783 3.81932 3.86295 3.97332 4.18720 4.25603 4.28278 4.32302 4.43457 4.48119 4.48537 4.64223 4.67820 4.82265 4.86750 4.89681 4.97277 5.05645 5.10824 5.16826 5.26395 5.29041 5.45066 5.51465 5.55175 5.58142 6.29733 6.36275 6.87409 7.09592 7.38388 8.11054 8.35959 9.32046 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.005947 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.581394 B = 4706.855210 C = 6585.686254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.139 5.139 3 N -0.297 5.297 4 C 0.033 3.967 5 C -0.070 4.070 6 C 0.617 3.383 7 O -0.561 6.561 8 N -0.597 5.597 9 C 0.105 3.895 10 C 0.171 3.829 11 H 0.068 0.932 12 N -0.720 5.720 13 C -0.235 4.235 14 H 0.077 0.923 15 C -0.070 4.070 16 N -0.968 5.968 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.297 1.297 20 H -0.296 1.296 21 C -0.078 4.078 22 C -0.126 4.126 23 C -0.123 4.123 24 C 0.120 3.880 25 N -0.253 5.253 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.229 0.771 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 11.699 -6.087 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.044 5.044 3 N -0.137 5.137 4 C -0.150 4.150 5 C -0.231 4.231 6 C 0.404 3.596 7 O -0.439 6.439 8 N -0.328 5.328 9 C -0.021 4.021 10 C 0.061 3.939 11 H 0.086 0.914 12 N -0.361 5.361 13 C -0.367 4.367 14 H 0.095 0.905 15 C -0.262 4.262 16 N -0.619 5.619 17 Si 0.796 3.204 18 H -0.190 1.190 19 H -0.224 1.224 20 H -0.224 1.224 21 C -0.079 4.079 22 C -0.183 4.183 23 C -0.181 4.181 24 C -0.001 4.001 25 N -0.102 5.102 26 H 0.125 0.875 27 H 0.151 0.849 28 H 0.132 0.868 29 H 0.246 0.754 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.693 11.962 -6.209 13.974 hybrid contribution -0.397 -0.432 0.400 0.710 sum 3.296 11.530 -5.808 13.324 Atomic orbital electron populations 1.22732 0.67250 1.07913 1.06929 1.48636 1.10610 0.98676 1.46444 1.73967 1.03799 1.15820 1.20131 1.25174 0.95022 0.93031 1.01763 1.22989 0.91290 0.95366 1.13445 1.16412 0.86094 0.80448 0.76641 1.90750 1.24595 1.75139 1.53431 1.48306 1.10053 1.04233 1.70196 1.22894 0.83838 0.94486 1.00894 1.21439 0.89022 0.88801 0.94667 0.91422 1.42634 1.16707 1.65957 1.10808 1.19639 0.93846 1.27870 0.95306 0.90498 1.25446 1.02042 1.02588 0.96116 1.69811 1.37550 1.48433 1.06103 0.85173 0.80137 0.77096 0.77950 1.18965 1.22437 1.22387 1.21983 0.94836 0.95235 0.95852 1.21574 1.01919 1.00669 0.94158 1.21609 0.99905 0.94920 1.01653 1.22530 0.89572 0.86109 1.01929 1.74678 1.03357 1.16108 1.16102 0.87481 0.84896 0.86801 0.75423 0.92914 0.92342 0.78406 0.94145 0.93258 0.90572 0.94602 0.91253 0.90522 0.93413 0.89292 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 11.55 127.77 1.48 2.85 16 2 N -0.14 -3.60 4.35 -206.55 -0.90 -4.50 16 3 N -0.30 -7.73 12.01 -56.17 -0.67 -8.40 16 4 C 0.03 0.88 12.04 85.45 1.03 1.91 16 5 C -0.07 -2.22 7.03 42.24 0.30 -1.92 16 6 C 0.62 21.08 7.86 86.77 0.68 21.76 16 7 O -0.56 -20.50 17.21 -3.90 -0.07 -20.57 16 8 N -0.60 -19.64 3.31 -814.82 -2.70 -22.34 16 9 C 0.10 3.79 4.99 86.73 0.43 4.23 16 10 C 0.17 6.36 2.84 46.18 0.13 6.49 16 11 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 12 N -0.72 -33.77 5.08 -317.33 -1.61 -35.39 16 13 C -0.23 -12.21 9.98 84.03 0.84 -11.37 16 14 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 15 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 16 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16 17 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 21 C -0.08 -2.35 0.87 -50.71 -0.04 -2.40 16 22 C -0.13 -4.07 7.95 71.99 0.57 -3.49 16 23 C -0.12 -3.19 8.68 71.98 0.62 -2.56 16 24 C 0.12 3.40 5.85 86.93 0.51 3.91 16 25 N -0.25 -8.00 9.73 -48.18 -0.47 -8.46 16 26 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.23 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 31 H 0.06 2.13 7.79 -2.38 -0.02 2.11 16 32 H 0.38 19.23 5.28 -92.72 -0.49 18.74 16 33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.05 1.84 6.36 -2.39 -0.02 1.82 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.03 1.26 7.91 -2.39 -0.02 1.24 16 37 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 2.20 7.99 -2.39 -0.02 2.18 16 41 H 0.08 2.30 7.95 -2.39 -0.02 2.28 16 Total: -1.00 -68.27 340.74 3.46 -64.81 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.55 Total: 29.26 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 7.01 Total: 16.06 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -6.07 Total: -135.80 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.27 3.46 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996404582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.007 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds